mRNA_C-tenellus_contig10026.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10026.2.1
Unique NamemRNA_C-tenellus_contig10026.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10026.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10026contigC-tenellus_contig10026:4411..5313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.7846415-CDS-C-tenellus_contig10026:4410..46921680789110.7846415-CDS-C-tenellus_contig10026:4410..4692Choristocarpus tenellus KU2346CDSC-tenellus_contig10026 4411..4692 -
1680789110.9045806-CDS-C-tenellus_contig10026:5265..53131680789110.9045806-CDS-C-tenellus_contig10026:5265..5313Choristocarpus tenellus KU2346CDSC-tenellus_contig10026 5266..5313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10026.2.1prot_C-tenellus_contig10026.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10026 4411..5313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10026.2.1

>prot_C-tenellus_contig10026.2.1 ID=prot_C-tenellus_contig10026.2.1|Name=mRNA_C-tenellus_contig10026.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=110bp
MDNWRWWLARTKEQGEQSLTRKPANSDKDDGGGSASSTRIKYSANTTIPK
HVPLLNSHCDRARSVVCSGSIQDANMLVLPTMGYHRHSREGARKEGQVER
PISPYVAAST
back to top

mRNA from alignment at C-tenellus_contig10026:4411..5313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10026.2.1 ID=mRNA_C-tenellus_contig10026.2.1|Name=mRNA_C-tenellus_contig10026.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=903bp|location=Sequence derived from alignment at C-tenellus_contig10026:4411..5313- (Choristocarpus tenellus KU2346)
ATGGACAACTGGCGATGGTGGCTGGCAAGGACAAAAGAGCAGGGCGAGGT
GTGCACTATTTTGTGTGGTACCCTTTGAAGTTCTTCCCTGATCCTACCTA
CATACAACTTTTGATGCTCTACTTAGATTATTGCCCTATATGTTTGTCGC
ACCCAGACTGAAGACCTTACACTAGTGTATGCATGGGGTAAATGAATATG
ATTGATGTTGTCAGTGGAGGAGGGACAAAAATGGTGTAAAGGAACAGGGT
ATGATCCTTTGTTTTCTTGTTACAGGTGAATTAAGTATAGTGTATATTTT
CCCGATGGACCCTACAATGACACAGGTGATATTTGTACATTTTAATGCCT
AACTGCCGATCCTGAGTTTTGATGTTCGTGATTTGGAGCAGGAATGCCCA
CCCTCCCTTCAAATAACACACTACTGCATAGTACCCCATTATTCTGATGC
TTCATCCATGACAGCAGCAATGAACGTATCGAAGCAGAGTTATGTCCCAC
CCATAACCTACTAAGTTACTCGATAATGCTATTATACGATGTTTGCTTTG
ATATTCTATACAAGAAATGGTTGACATCATCCTCTCTCCTTTTCCCTGCC
CCTTCCCCTCTCATCATTTAGCAAAGTCTCACTCGCAAACCTGCAAATTC
TGATAAGGATGATGGTGGTGGCAGCGCCTCATCCACCAGAATCAAGTACA
GTGCCAACACTACCATCCCCAAGCACGTCCCTTTGCTCAACAGCCACTGT
GACAGAGCCCGCAGTGTTGTGTGTTCTGGATCTATCCAAGATGCCAACAT
GCTCGTCCTACCTACAATGGGTTATCATCGGCATAGCCGGGAAGGAGCAA
GGAAAGAGGGACAAGTAGAACGGCCAATCTCGCCTTATGTTGCTGCTTCC
ACC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig10026:4411..5313-

>mRNA_C-tenellus_contig10026.2.1 ID=mRNA_C-tenellus_contig10026.2.1|Name=mRNA_C-tenellus_contig10026.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=330bp|location=Sequence derived from alignment at C-tenellus_contig10026:4411..5313- (Choristocarpus tenellus KU2346)
ATGGACAACTGGCGATGGTGGCTGGCAAGGACAAAAGAGCAGGGCGAGCA
AAGTCTCACTCGCAAACCTGCAAATTCTGATAAGGATGATGGTGGTGGCA
GCGCCTCATCCACCAGAATCAAGTACAGTGCCAACACTACCATCCCCAAG
CACGTCCCTTTGCTCAACAGCCACTGTGACAGAGCCCGCAGTGTTGTGTG
TTCTGGATCTATCCAAGATGCCAACATGCTCGTCCTACCTACAATGGGTT
ATCATCGGCATAGCCGGGAAGGAGCAAGGAAAGAGGGACAAGTAGAACGG
CCAATCTCGCCTTATGTTGCTGCTTCCACC
back to top