mRNA_C-tenellus_contig10024.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10024.1.1
Unique NamemRNA_C-tenellus_contig10024.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Match: A0A6D2JMB2_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JMB2_9BRAS)

HSP 1 Score: 68.6 bits (166), Expect = 4.480e-10
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 1 
Query:   13 WRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTTRLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFG---ETKTVKEVEDMVVARYKDLQAINMGKSTGNGHALVASVGKSSLGRKGRGK----GRIVCYMCGKDGHMKNDCPDLDRGRHTGASARL 507
            WRAL+  +  K+      ++Q+     +D+ K     L    +L + L S+   I +E +   +L  L   Y  +   + +G   ET TV+EV+    A+  +L+           H  +   GKSS   K +GK    G+  C++CGK+GH K +CP+ D+ +   ASA +
Sbjct:  172 WRALEEEYQAKSLPNRIYLKQQFASFRMDESKTMEENLDTFLKLISDLASLQISISDEDQAIQLLTSLPPAYEPLVHTLKYGTGKETLTVREVKASAYAKEAELR-----------HKGMLKRGKSSAEGKSKGKVNKAGKSACFICGKEGHWKRECPNRDQRKSGEASANV 332
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BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Match: UPI00142E8FD0 (uncharacterized protein LOC103850617 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E8FD0)

HSP 1 Score: 66.6 bits (161), Expect = 2.040e-9
Identity = 50/181 (27.62%), Postives = 83/181 (45.86%), Query Frame = 1 
Query:   13 WRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTTRLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFG---ETKTVKEVEDMVVARYKDLQAINM-GKSTGNGHALVASVGKSSL--GRK-GRGKGRI------------------VCYMCGKDGHMKNDCPDLDRG 480
            W+AL+A +  KT      ++Q      + ++K     L    +L   L S+  +I +E +   +L+ L   Y  +   + +G   ET T+KEV     ++  +L+   + GKST  G  L+AS GK     G+K GRG+ +                    C++CG++GH K DCP+   G
Sbjct:   99 WKALEADYQTKTLPNRIYLKQSFASFKMSEQKSIEENLDGFLKLVDDLASLNIIIPDEDQAIQVLSSLPPQYDSLVHTLKYGNSRETLTLKEVTTSAYSKEAELREKGLVGKSTSAGEGLMASQGKGDKYQGKKQGRGRSKSRDNGSRKGSRSQTPAKPRECWVCGREGHFKRDCPERKEG 279
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10024.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6D2JMB2_9BRAS4.480e-1027.91Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI00142E8FD02.040e-927.62uncharacterized protein LOC103850617 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10024contigC-tenellus_contig10024:5096..5671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra85763
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size576
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.01e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size576
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.7460544-CDS-C-tenellus_contig10024:5095..56711680789110.7460544-CDS-C-tenellus_contig10024:5095..5671Choristocarpus tenellus KU2346CDSC-tenellus_contig10024 5096..5671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10024.1.1prot_C-tenellus_contig10024.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10024 5096..5671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10024.1.1

>prot_C-tenellus_contig10024.1.1 ID=prot_C-tenellus_contig10024.1.1|Name=mRNA_C-tenellus_contig10024.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=192bp
TLARWRALDAAFMPKTRQEARRVRQELNRLMIDDRKDPSPGLTEISRLTT
RLESMGEMIGEETKVTTILNKLGENYSQVKSFVVFGETKTVKEVEDMVVA
RYKDLQAINMGKSTGNGHALVASVGKSSLGRKGRGKGRIVCYMCGKDGHM
KNDCPDLDRGRHTGASARLGEADNQDGRCPRCTGLGHDYDEC
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mRNA from alignment at C-tenellus_contig10024:5096..5671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10024.1.1 ID=mRNA_C-tenellus_contig10024.1.1|Name=mRNA_C-tenellus_contig10024.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=576bp|location=Sequence derived from alignment at C-tenellus_contig10024:5096..5671- (Choristocarpus tenellus KU2346)
ACTTTGGCTCGGTGGCGCGCCCTTGATGCGGCGTTCATGCCAAAGACCCG
CCAGGAGGCGAGGCGTGTACGCCAGGAACTGAATCGCCTGATGATTGATG
ACAGGAAGGACCCTTCTCCAGGACTGACTGAAATATCCAGGTTAACTACG
AGACTGGAGTCGATGGGAGAGATGATAGGAGAAGAGACCAAGGTGACCAC
GATTCTCAATAAGCTTGGGGAGAACTACTCCCAAGTCAAGAGCTTTGTAG
TTTTTGGGGAAACGAAGACGGTGAAGGAGGTTGAAGATATGGTGGTGGCG
AGGTACAAAGACCTGCAAGCGATCAACATGGGTAAGTCCACTGGGAATGG
CCATGCTTTGGTTGCGAGTGTGGGAAAGAGTTCCTTGGGCAGAAAGGGGC
GTGGGAAGGGGCGCATAGTTTGTTACATGTGTGGCAAAGATGGTCATATG
AAAAATGACTGCCCCGACCTAGACAGGGGACGACACACTGGTGCCTCTGC
AAGATTGGGGGAAGCTGACAACCAAGATGGAAGATGCCCAAGGTGTACAG
GGTTAGGGCATGACTATGACGAATGT
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Coding sequence (CDS) from alignment at C-tenellus_contig10024:5096..5671-

>mRNA_C-tenellus_contig10024.1.1 ID=mRNA_C-tenellus_contig10024.1.1|Name=mRNA_C-tenellus_contig10024.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=576bp|location=Sequence derived from alignment at C-tenellus_contig10024:5096..5671- (Choristocarpus tenellus KU2346)
ACTTTGGCTCGGTGGCGCGCCCTTGATGCGGCGTTCATGCCAAAGACCCG
CCAGGAGGCGAGGCGTGTACGCCAGGAACTGAATCGCCTGATGATTGATG
ACAGGAAGGACCCTTCTCCAGGACTGACTGAAATATCCAGGTTAACTACG
AGACTGGAGTCGATGGGAGAGATGATAGGAGAAGAGACCAAGGTGACCAC
GATTCTCAATAAGCTTGGGGAGAACTACTCCCAAGTCAAGAGCTTTGTAG
TTTTTGGGGAAACGAAGACGGTGAAGGAGGTTGAAGATATGGTGGTGGCG
AGGTACAAAGACCTGCAAGCGATCAACATGGGTAAGTCCACTGGGAATGG
CCATGCTTTGGTTGCGAGTGTGGGAAAGAGTTCCTTGGGCAGAAAGGGGC
GTGGGAAGGGGCGCATAGTTTGTTACATGTGTGGCAAAGATGGTCATATG
AAAAATGACTGCCCCGACCTAGACAGGGGACGACACACTGGTGCCTCTGC
AAGATTGGGGGAAGCTGACAACCAAGATGGAAGATGCCCAAGGTGTACAG
GGTTAGGGCATGACTATGACGAATGT
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