mRNA_C-tenellus_contig1001.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1001.5.1
Unique NamemRNA_C-tenellus_contig1001.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: D7FU74_ECTSI (RanBD1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU74_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.340e-32
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFL 309
            ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMR+KLFIFGETLLNKGTG KEWVERGIGEVKFL
Sbjct:   48 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFL 109
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A6H5KI29_9PHAE (RanBD1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI29_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.810e-30
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:  127 STAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            STAQFEPVVQLEEVEVKTHEEDEEVLWKMR+KLFIFGETLLNKGTG KEWVERGIGEVKFL+
Sbjct:   49 STAQFEPVVQLEEVEVKTHEEDEEVLWKMRAKLFIFGETLLNKGTGQKEWVERGIGEVKFLQ 110
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A7S2XZR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZR9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.810e-25
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            ESTA FEPVVQL+E+EVKTHEE+EEVLWK R KLF+FGETLLNKGTG K W ERGIGE KFLK
Sbjct:   68 ESTAHFEPVVQLDEIEVKTHEEEEEVLWKWRGKLFVFGETLLNKGTGQKTWNERGIGEFKFLK 130
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A835YXP9_9STRA (RanBP1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXP9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.140e-24
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            E T  FEPVVQL+EVEVKTHEEDE+VL+KMR+KLF+FGETLLNKG+G K W ERG+GEVKFLK
Sbjct:   44 ECTTVFEPVVQLDEVEVKTHEEDEQVLYKMRAKLFVFGETLLNKGSGTKTWNERGVGEVKFLK 106
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A8J2T1Z3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1Z3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.180e-22
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK*AQTSLL 333
            ESTA+F PVVQL+EVEVKTHEEDE+V +K+R+KLF F ETLLNKG+G KEW+ERG+GEVK LK  + S++
Sbjct:   94 ESTAEFTPVVQLDEVEVKTHEEDEDVDFKIRAKLFRFSETLLNKGSGKKEWIERGVGEVKILKHRENSMV 163
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A7S3NPI9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPI9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.150e-20
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            EST +F PVVQL+EVEVKT EEDEE+++KMR++L+ F ETLLNKGTG KEW+ERG+GE K LK
Sbjct:   81 ESTQEFTPVVQLDEVEVKTLEEDEEIIFKMRARLYRFAETLLNKGTGKKEWIERGVGEAKLLK 143
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A4D9CUK6_9STRA (RanBD1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUK6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-19
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEV 300
            ESTA F PVVQL+EVE KTHEEDEE L+KMRSKL++FGE +L+KG+G K W+ERGIGEV
Sbjct:   35 ESTAIFTPVVQLDEVETKTHEEDEETLYKMRSKLYVFGEAMLDKGSGKKSWLERGIGEV 93
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A6S8ZTG3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8ZTG3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.550e-19
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK*AQTSLLLF 339
            ESTA F+PVV+LEEVEVK+ EEDEEV++ MR+KLF+FGETLL+KGTG K W ERGIGE + L+  +   L F
Sbjct:   28 ESTATFKPVVELEEVEVKSGEEDEEVVFSMRAKLFLFGETLLDKGTGNKSWRERGIGEARILRHREHQRLRF 99
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A7R9ZPH3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZPH3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.750e-19
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            ESTAQFEPVV+LEEV+VK+ EEDEEV++ +RSKLFIFGETLL+ GTG K W ERGIGE K L+
Sbjct:   93 ESTAQFEPVVKLEEVDVKSGEEDEEVVYGIRSKLFIFGETLLDVGTGNKSWKERGIGEAKILR 155
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BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Match: A0A7S0C0M0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0M0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.400e-19
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:  124 ESTAQFEPVVQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEVKFLK 312
            ESTA FEPVV+LEEVE K+ EEDEE+L  MR KLF++GETLL+KGTG K W ERGIGE++ LK
Sbjct:   37 ESTATFEPVVRLEEVETKSGEEDEEILHGMRCKLFVYGETLLDKGTGKKSWRERGIGEIRLLK 99
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1001.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU74_ECTSI7.340e-3296.77RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KI29_9PHAE7.810e-3095.16RanBD1 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S2XZR9_9STRA4.810e-2582.54Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXP9_9STRA4.140e-2479.37RanBP1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A8J2T1Z3_9STRA3.180e-2270.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NPI9_9STRA3.150e-2071.43Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4D9CUK6_9STRA1.200e-1974.58RanBD1 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A6S8ZTG3_9STRA1.550e-1965.28Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9ZPH3_9STRA2.750e-1974.60Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0C0M0_9STRA3.400e-1971.43Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1001contigC-tenellus_contig1001:13635..14614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FU74
PFAMsRan_BP1,TPR_1,zf-RanBP
Model size483
Max annot lvl2759|Eukaryota
KEGG koko:K12172,ko:K15306,ko:K20282
KEGG Pathwayko03013,ko05166,ko05203,map03013,map05166,map05203
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000226,GO:0000278,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006508,GO:0006511,GO:0006606,GO:0006607,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007088,GO:0007154,GO:0007165,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0008536,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009755,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016234,GO:0016740,GO:0016925,GO:0017016,GO:0017038,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0019787,GO:0019789,GO:0019899,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030522,GO:0031090,GO:0031267,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0032239,GO:0032241,GO:0032386,GO:0032388,GO:0032446,GO:0032870,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034504,GO:0034613,GO:0035626,GO:0036211,GO:0042127,GO:0042175,GO:0042221,GO:0042405,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044615,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0045787,GO:0045840,GO:0045931,GO:0046602,GO:0046604,GO:0046605,GO:0046607,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051493,GO:0051495,GO:0051603,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0060255,GO:0060341,GO:0061842,GO:0065007,GO:0070507,GO:0070647,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0090068,GO:0098589,GO:0098805,GO:0140096,GO:1900180,GO:1900182,GO:1901564,GO:1901565,GO:1901575,GO:1903047,GO:1903827,GO:1903829
Exons2
Evalue7.62e-34
EggNOG OGsCOG5171@1|root,KOG0864@2759|Eukaryota
Ec32 ortholog descriptionRan binding domain
Ec32 orthologEc-25_003000.1
DescriptionRan GTPase binding
Cds size315
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko03110,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.086288-CDS-C-tenellus_contig1001:13634..138461680789110.086288-CDS-C-tenellus_contig1001:13634..13846Choristocarpus tenellus KU2346CDSC-tenellus_contig1001 13635..13846 +
1680789110.1041932-CDS-C-tenellus_contig1001:14343..144461680789110.1041932-CDS-C-tenellus_contig1001:14343..14446Choristocarpus tenellus KU2346CDSC-tenellus_contig1001 14344..14446 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789110.11676-UTR-C-tenellus_contig1001:14446..146141680789110.11676-UTR-C-tenellus_contig1001:14446..14614Choristocarpus tenellus KU2346UTRC-tenellus_contig1001 14447..14614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1001.5.1prot_C-tenellus_contig1001.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1001 13635..14446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1001.5.1

>prot_C-tenellus_contig1001.5.1 ID=prot_C-tenellus_contig1001.5.1|Name=mRNA_C-tenellus_contig1001.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=105bp
MSDFAALAAQATSPPTPETPAAAGETPAAAGGEESVVAHEEESTAQFEPV
VQLEEVEVKTHEEDEEVLWKMRSKLFIFGETLLNKGTGVKEWVERGIGEV
KFLK*
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mRNA from alignment at C-tenellus_contig1001:13635..14614+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1001.5.1 ID=mRNA_C-tenellus_contig1001.5.1|Name=mRNA_C-tenellus_contig1001.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=980bp|location=Sequence derived from alignment at C-tenellus_contig1001:13635..14614+ (Choristocarpus tenellus KU2346)
ATGAGTGACTTTGCGGCCCTCGCAGCACAAGCCACCAGTCCACCCACTCC
CGAAACCCCTGCAGCAGCTGGAGAGACCCCTGCTGCTGCCGGAGGAGAGG
AATCCGTTGTGGCCCACGAGGAGGAGAGCACAGCGCAATTCGAGCCTGTG
GTTCAGCTTGAGGAAGTGGAGGTGAAGACGCACGAGGAGGATGAGGAAGT
CCTGTGGAAAATGTGAGAGGATATCTGAAGGGCCAGGGAGAGATCGAAAT
ATAGAGGAACATGCGTAACGTTCTTGTACGTTTAGCGTAGTGAATGATAA
GTCTTGCATAAGGTGAGCCTGTGGTGACCATTTGAGTTGTAGCACCAACT
CCCTGACTCCCCCTAGAGGTAGAGTTGCATTTTTTATGGTCAAGTGCTTG
TTCCGATATCCGGTGTGGAGTTTGGCAAGTGCTGTTCTTTGAGTCATGGT
AGTTTTAAGCAGCACGAATACAAGCATGGGGAGCCCATACTCTTGACGTT
GGATGTGTTAGAAATGGGTAGTCTATTCCACGAAGGAAACTCGTTGCCCC
CGACCCGCTCCACACCTCTACACCCCTGGCTGTCCCCCGTTAGCGCCGTC
TCCCATCCGTCACCTGACCTCAAATGATGACCTTTCTTCCCTTTCTGTCC
TGCTACTTTCTCGAACACCACTGATTTTCTTGCTTGTTCTGTAACGATAC
CATTGGCAGGCGGTCAAAGCTCTTCATTTTCGGAGAGACTTTGCTGAACA
AGGGTACTGGCGTGAAGGAATGGGTGGAGCGAGGAATCGGCGAAGTCAAG
TTCCTCAAGTGAGCTCAAACTTCCCTTCTTTTATTTGCTGAGCCAGCAAG
GAGCAGCCGATGTACTGCCCAAATTAAGAACCCCTTCGTGGCTAGCTAAA
GCCCGGTCTCGCAGTTTTTGTACGATTGCACACTGCAGTTCGTTCCCTTC
CTATACACCCTTTCAATTCACAAATTTATT
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Coding sequence (CDS) from alignment at C-tenellus_contig1001:13635..14614+

>mRNA_C-tenellus_contig1001.5.1 ID=mRNA_C-tenellus_contig1001.5.1|Name=mRNA_C-tenellus_contig1001.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=315bp|location=Sequence derived from alignment at C-tenellus_contig1001:13635..14614+ (Choristocarpus tenellus KU2346)
ATGAGTGACTTTGCGGCCCTCGCAGCACAAGCCACCAGTCCACCCACTCC
CGAAACCCCTGCAGCAGCTGGAGAGACCCCTGCTGCTGCCGGAGGAGAGG
AATCCGTTGTGGCCCACGAGGAGGAGAGCACAGCGCAATTCGAGCCTGTG
GTTCAGCTTGAGGAAGTGGAGGTGAAGACGCACGAGGAGGATGAGGAAGT
CCTGTGGAAAATGCGGTCAAAGCTCTTCATTTTCGGAGAGACTTTGCTGA
ACAAGGGTACTGGCGTGAAGGAATGGGTGGAGCGAGGAATCGGCGAAGTC
AAGTTCCTCAAGTGA
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