mRNA_C-tenellus_contig100.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig100.5.1
Unique NamemRNA_C-tenellus_contig100.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: D7FVA6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.100e-51
Identity = 79/118 (66.95%), Postives = 101/118 (85.59%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N +VNL LD+D   K RFS LQ  TGRALLA SGRSPDD+SSIVLV+ +G++++QSDA+LR+G+L+GG VG+++ PGVLVPKFVR+ +YDTVA+NRYS+MGK   CRCSDE+YADRF+
Sbjct:   76 NGFVNLFLDVDTDEKFRFSALQSQTGRALLALSGRSPDDISSIVLVEQSGAAHIQSDALLRMGRLLGGPVGLVLLPGVLVPKFVRNKMYDTVADNRYSVMGKRDVCRCSDERYADRFI 193          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A836CH16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH16_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.210e-45
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAK-LRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            NTWVN AL LD   K LRF+PLQGD G+ALL  +GR+ DD+SSIVLV + GS Y++SDA+LRI K +GG   VL  PG L+P+F RD LYD VANNRYS+MGK   CRCSD +YADRF+
Sbjct:   29 NTWVNAALQLDPDGKALRFTPLQGDVGKALLQQAGRAADDISSIVLVDEQGS-YIKSDAILRISKALGGPAPVLAAPGFLMPQFARDTLYDLVANNRYSLMGKRETCRCSDPKYADRFI 146          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: D8SQD1_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SQD1_SELML)

HSP 1 Score: 112 bits (280), Expect = 2.590e-29
Identity = 60/118 (50.85%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VN  LD D  A+LRF+ LQ + GRALL  SGRS DD+SSIVLV+    SY++S+AVLRI   +      L    +L P F+RD  YD +ANNRYS+ G+   CR SDEQ+ +RF+
Sbjct:   36 NGGVNFVLDRDPRARLRFAALQSNAGRALLEKSGRSRDDISSIVLVEKQ-RSYIKSEAVLRIAHYLDEPYPSLATLALLFPLFLRDPTYDLIANNRYSLFGQTNHCRTSDEQFKERFL 152          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A383WGK0_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WGK0_TETOB)

HSP 1 Score: 113 bits (283), Expect = 6.200e-29
Identity = 61/118 (51.69%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VN  LD DK    RF+ LQ   GR LL   GR+PDD+SSIVLV+++   Y++S+AVLRI   +G  + +L    +LVPKFV D +YD VANNRYS  GK   CR SD+ +ADRF+
Sbjct:  108 NGGVNFMLDWDKEGVYRFAALQSTPGRQLLTRCGRAPDDISSIVLVEES-RCYIKSEAVLRIALRLGMPLPLLAGLALLVPKFVGDPVYDQVANNRYSFFGKSDSCRVSDDGFADRFL 224          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A7S2E5B0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E5B0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.850e-29
Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPG-----VLVPKFVRDHLYDTVANNRYSIMGKLRECRCS-DEQYADRFV 354
            N  VN+ALD D S KLRF+ LQ + GRALL  +GR  DD+SSIVLV D G+ Y++SDA+L+I + +  +  + ++P      VLVPKF+RD +YD VA+NRY +MGK  ECR   D   ++RFV
Sbjct:   86 NNAVNIALDWDPSGKLRFAALQSNVGRALLQANGRQADDISSIVLVTDEGA-YIKSDAILKITEALTPLSMLPLKPAAVLGRVLVPKFIRDVIYDGVADNRYDLMGKREECRYDVDGSLSERFV 208          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A7S0XHX8_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XHX8_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 1.270e-28
Identity = 62/122 (50.82%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGG----VVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VNLALDLD   KLRF+ LQ D GR LL  +GR P D+SSIVLV++N ++Y +SDAVLRI   +        G L   G LVP+F+RD +YD VA+NRY ++G    CR  D+++ +RFV
Sbjct:   95 NGGVNLALDLDPPGKLRFAALQSDAGRQLLVRAGRDPTDISSIVLVEEN-NAYTKSDAVLRIATYLENPLLPAAGAL---GPLVPQFLRDAVYDAVADNRYELLGIQDSCRLGDDRFDERFV 212          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A250X8I3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X8I3_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 1.580e-28
Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VNL LDLD   + R + LQ   GR LL   GR PDD+SSIV+V+  G  +++SDA+LRI + +     +    GV VP F+RD LYD VA+NRYSI+GK   CR  D+++++RF+
Sbjct:  103 NGAVNLMLDLDPRGEFRMAALQSPAGRRLLQTCGRQPDDISSIVVVERGGKHHIKSDAILRIAQGLSNPFPLFALFGVPVPPFLRDSLYDLVADNRYSILGKRDVCRLKDDRFSERFI 220          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A2K1L8C5_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L8C5_PHYPA)

HSP 1 Score: 110 bits (276), Expect = 1.210e-27
Identity = 56/118 (47.46%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VN  LD D   ++R + LQ + GRALL  +GR  DDLSS+VL++ +  SY++S+ VLR  + +G ++  +   G+L P F RD +YD VANNRYSI+GK  +CR SD ++ DRFV
Sbjct:  133 NAGVNFVLDNDPEGRVRMAALQSEAGRALLLRAGRLSDDLSSLVLIEKD-RSYIKSEGVLRTAQYLGNLLPPVGSLGLLFPLFFRDFVYDNVANNRYSILGKRDQCRVSDPRFNDRFV 249          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A7S2B0P4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B0P4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.610e-27
Identity = 55/118 (46.61%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VN ALD D     RF+ LQ  TGRALL  +GR PDD+SSIVLV D+ ++Y++SDA+LRI + +      L   G+  PK  RD  YD +A NRY + G+ + CR SD+++  RF+
Sbjct:   97 NGGVNFALDWDPDGNFRFAALQSPTGRALLRRAGREPDDISSIVLVDDS-AAYIKSDAILRIARKLNLPFPFLGSAGLFFPKLPRDVFYDVIAQNRYRVFGRSQSCRLSDDRFEARFI 213          
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Match: A0A7J7QEF6_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QEF6_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 3.460e-27
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNGSSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIMGKLRECRCSDEQYADRFV 354
            N  VN  LD DK    RF+ LQ   G+ LL   GR+PDD+SSIVLV+ +    ++S+AVLRI   +G  + +L    +LVPKF+ D +YD VANNRYS+ GK   CR SD  +ADRF+
Sbjct:  103 NGGVNFMLDWDKEGVYRFAALQSTPGQQLLTRCGRAPDDISSIVLVEQD-RCCIKSEAVLRIATRLGMPLPLLAGLALLVPKFISDPVYDQVANNRYSVFGKSNSCRVSDAGFADRFL 219          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig100.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVA6_ECTSI6.100e-5166.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH16_9STRA1.210e-4563.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8SQD1_SELML2.590e-2950.85Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A383WGK0_TETOB6.200e-2951.69Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S2E5B0_9STRA6.850e-2950.81Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0XHX8_9CHLO1.270e-2850.82Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A250X8I3_9CHLO1.580e-2847.46Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A2K1L8C5_PHYPA1.210e-2747.46Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A7S2B0P4_9STRA1.610e-2746.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7J7QEF6_9CHLO3.460e-2749.15Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig100contigC-tenellus_contig100:4193..4964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVA6
PFAMsDUF393
Model size357
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1e-51
EggNOG OGsCOG3011@1|root,2RY7G@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF393
Ec32 orthologEc-14_000370.1
DescriptionProtein of unknown function, DUF393
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789108.5875494-CDS-C-tenellus_contig100:4192..43031680789108.5875494-CDS-C-tenellus_contig100:4192..4303Choristocarpus tenellus KU2346CDSC-tenellus_contig100 4193..4303 -
1680789108.6072404-CDS-C-tenellus_contig100:4549..46701680789108.6072404-CDS-C-tenellus_contig100:4549..4670Choristocarpus tenellus KU2346CDSC-tenellus_contig100 4550..4670 -
1680789108.6189132-CDS-C-tenellus_contig100:4839..49641680789108.6189132-CDS-C-tenellus_contig100:4839..4964Choristocarpus tenellus KU2346CDSC-tenellus_contig100 4840..4964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig100.5.1prot_C-tenellus_contig100.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig100 4193..4964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig100.5.1

>prot_C-tenellus_contig100.5.1 ID=prot_C-tenellus_contig100.5.1|Name=mRNA_C-tenellus_contig100.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=119bp
NTWVNLALDLDKSAKLRFSPLQGDTGRALLAFSGRSPDDLSSIVLVQDNG
SSYVQSDAVLRIGKLIGGVVGVLVQPGVLVPKFVRDHLYDTVANNRYSIM
GKLRECRCSDEQYADRFV*
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mRNA from alignment at C-tenellus_contig100:4193..4964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig100.5.1 ID=mRNA_C-tenellus_contig100.5.1|Name=mRNA_C-tenellus_contig100.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=772bp|location=Sequence derived from alignment at C-tenellus_contig100:4193..4964- (Choristocarpus tenellus KU2346)
AATACCTGGGTCAATCTGGCCCTTGACCTTGACAAGTCCGCCAAGTTGCG CTTTTCACCGTTACAGGGGGATACAGGGCGTGCATTGCTTGCCTTCTCAG GCAGATCTCCTGATGACCTTTCCAGGTGAAAAATTGACAACCCATTCCAT GGTCATGATATTAATTGAGGAAGCTATTAAACATGCATGTAGACTGATGG ATTGAATCCTGTAGCTGATCTGGGACTAAGCTGTAGAGCATCAAACTTGT CCCTAAGTTAATTAGGCAAATGCTTTCACTGCTGTTGATTCCAGCATTGT TCTTGTTCAGGATAATGGCTCTTCTTATGTCCAGTCTGATGCTGTCCTGC GCATTGGGAAACTAATTGGGGGAGTAGTCGGTGTGCTGGTTCAACCAGGT GTACTTGTGCCAAAGGTACGAGGTAGTAAAGATCAACTTGGATGTGTTTC AGTTCTGTCTGCTAGAGGGTGGTGGGTGTGTTGTTTAGTTGAAACAAATT TGGTAAGCAATACAAATTCGACCAAGGTGTAGATGGGGAAACGATTGCTT TTCTCCTGGCATCTTGGAAAGGCATCTTGGAAAGTGTTGTGATCATTTCA AGACACAGTTCACAGTAATTCCTAACCTTGCCCCTTCCCTTTTCTTCTAC TTGATCTGCAGTTTGTAAGGGATCATCTGTACGACACAGTGGCCAACAAC CGCTACAGCATAATGGGAAAACTTCGTGAATGCCGGTGCTCTGATGAGCA GTATGCAGACCGGTTTGTGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig100:4193..4964-

>mRNA_C-tenellus_contig100.5.1 ID=mRNA_C-tenellus_contig100.5.1|Name=mRNA_C-tenellus_contig100.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=357bp|location=Sequence derived from alignment at C-tenellus_contig100:4193..4964- (Choristocarpus tenellus KU2346)
AATACCTGGGTCAATCTGGCCCTTGACCTTGACAAGTCCGCCAAGTTGCG
CTTTTCACCGTTACAGGGGGATACAGGGCGTGCATTGCTTGCCTTCTCAG
GCAGATCTCCTGATGACCTTTCCAGCATTGTTCTTGTTCAGGATAATGGC
TCTTCTTATGTCCAGTCTGATGCTGTCCTGCGCATTGGGAAACTAATTGG
GGGAGTAGTCGGTGTGCTGGTTCAACCAGGTGTACTTGTGCCAAAGTTTG
TAAGGGATCATCTGTACGACACAGTGGCCAACAACCGCTACAGCATAATG
GGAAAACTTCGTGAATGCCGGTGCTCTGATGAGCAGTATGCAGACCGGTT
TGTGTGA
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