mRNA_C-tenellus_contig1.17.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1.17.1
Unique NamemRNA_C-tenellus_contig1.17.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: D8LK59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK59_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 2.170e-97
Identity = 150/285 (52.63%), Postives = 192/285 (67.37%), Query Frame = 1
Query:    1 SWHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGS-----VGVMSGNTLEVVSAL*TKG----SAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAIPFLRPTEG 828
            +W +R NH PIL E E D   AWL   A  G Q  + G+VVVK T MQ+PEILFGN+ L+   +ES  +L F++R AL +WVELF  G +E  K R +  + +R    G  I+ QEYDWTW TDYAGS     VGV    + +++  L   G    + V WV+C PGGI+R +L DQS PIL YD+VVL+EDFIHDHGVVRLSVK RVMP  W+VLLRYWLRVDGVVMKV DTR FHKFG+  V+RERT++S++F  L  +G+ST  +++  A +A+P L  + G
Sbjct:   12 AWTVRSNHRPILGEEEHDALVAWLGDEASSGPQVLACGSVVVKGTPMQLPEILFGNNALEFRHQESGFILQFESRAALKKWVELFAEGAFEVIKVREAQKWQTRT---GTPIRKQEYDWTWGTDYAGSCRRQDVGVEYSESGDILQPLTRTGKDTETPVEWVACEPGGINRQMLLDQSSPILMYDDVVLFEDFIHDHGVVRLSVKTRVMPGFWFVLLRYWLRVDGVVMKVFDTRCFHKFGELSVFRERTQHSVSFTSLEQRGLSTDPSAYPNAESALPVLDLSSG 293          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A836CMW7_9STRA (TIP41-like family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 7.110e-48
Identity = 97/271 (35.79%), Postives = 136/271 (50.18%), Query Frame = 1
Query:    4 WHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGSVGVMSGNTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAIPFLR 816
            W +     P+ +E +  +    LT  +   +Q     ++VV+   MQ+PE+LFG + LQL    S LVLHF A  AL  WV + + G  E                   +                      G  +++ SA   + + + W  C   GID  +L+D + PILF+DEV L+EDFIHD G VRLS K+RVMP+CWYVLLRYWLRVDG+ +K+ D R FHKFG   V+RE +   + FE++  +  S        A  A P L+
Sbjct:   38 WRVLTRCCPMSNEHDLCQLVQELTPPSDESSQPHE--SIVVRGNHMQLPEMLFGGNALQLQHPASGLVLHFCAARALRDWVNMHIDGPVEQQ-----------------DXXXXXXXXXXXXXXXXXXXXXXGGLIDISSA--AQHTTLDWQRCDASGIDVAMLQDSAAPILFFDEVTLFEDFIHDAGEVRLSAKVRVMPRCWYVLLRYWLRVDGITLKIADARYFHKFGAADVHREVSVLQLPFEDVERRLPSATQACHLTADQAYPILK 287          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A7S2H1X7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1X7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.500e-44
Identity = 98/288 (34.03%), Postives = 142/288 (49.31%), Query Frame = 1
Query:    4 WHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGK------YEASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGSVGVMSGNTLEVVSAL*TKGSA-VAWVSCP------PGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAI---PFLRP 819
            WHI  +  PI SE ER      L   AG                Q+ +PE+++  S L L  + S   + F A  AL  W     TG        +  K   S  + +    G D    + YDWT+ TD++G         L   S L  + +A  AWV          GGIDR LL D ++PILF+D+V+L+ED +HD G +R+S +IRVMP  W+V++R W+R+DGV ++ V+TR+FHKFG  HV RER    + +E L   G++    + ++    +   P L P
Sbjct:   25 WHITSSRGPIASEDERHSIRERLNSLAG---------------FQVTLPEMVYNASNLVLRHDASQTTVEFSALPALEAWASAQRTGSGCGGHFKDVLKVSGSEKWLAGRQAGPDQTLAKSYDWTFMTDWSGD--------LTHTSTLAGENTAPAAWVDADGAEGEETGGIDRALLLDHTLPILFFDDVLLFEDELHDQGDMRISARIRVMPAAWFVVVRCWVRLDGVGLRAVETRLFHKFGDAHVSRERYAREVVWENLESVGLNGEPATLSDPDLVVAKLPLLEP 289          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: W7TH58_9STRA (TIP41-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH58_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.100e-42
Identity = 91/263 (34.60%), Postives = 135/263 (51.33%), Query Frame = 1
Query:  145 MPEILFGNSTLQLH--------DEE-----------------SSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSRLHGG--GDNIKLQEYDWTWATDYAGSV--GVMSG-----------NTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAIPFL 813
            +PEILFG S L+L         +EE                 +   L F+  GAL  W E  +    +     + +P  SR   G  G  ++   YDW + TDY G +   V  G           +TL  V     + + + W       IDR LL+ +  PILFYD+V LYED +HDHGVV L+VK+RVMP CW+VLLRY+LRVDGV++++ DTR FH+ G   + +E  +  +TF +L ++G+ST  + + + +  +  +
Sbjct:  123 LPEILFGKSFLELRHSVIPGRSEEEVLGDSKEEMRSGALPATTDFWLRFNTTGALISWAERHVDTNEKGKVEVIRVPEASRWAAGHLGAGLRQVRYDWVFGTDYEGELLRRVRGGGQRDKVEADPCDTLLDVEERKERSAGLEWEVADASVIDRSLLQCRDQPILFYDDVTLYEDELHDHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIGKESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMI 385          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A4D9D382_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D382_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.130e-41
Identity = 99/293 (33.79%), Postives = 147/293 (50.17%), Query Frame = 1
Query:   55 EEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLH--------DEE-----------------SSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSRLHGG--GDNIKLQEYDWTWATDYAGSV--GVMSGN-----------TLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAIPFL 813
            EEGA+ +     G+  + L N       + +PEILFG S L+L         +EE                 +   L F+  GAL  W E  +    +     + +P  SR   G  G  ++   YDW + TDY G +   V  GN           TL  V     + + + W       IDR LL+ +  PILFYD+V LYED +HDHGVV L+VK+RVMP CW+VLLRY+LRVDGV++++ DTR FH+ G   + +E  +  +TF +L ++G+ST  + + + +  +  +
Sbjct:   32 EEGAFAS-----GDHPAGLSNA--GHNFIPLPEILFGKSFLELRHSAIPGRSEEEVLWDSKEEVRSGALPATTDFWLRFNTTGALISWAERHVDTNEKGKVEVIRVPEASRWAAGHLGAGLRQVRYDWVFGTDYEGELLKRVSGGNQRDKVEADPCDTLLDVEERKERSAGLEWEVADASVIDRSLLQCRDQPILFYDDVTLYEDELHDHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIGKESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMI 317          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A0C9RYV1_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_2233_1410 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RYV1_9SPER)

HSP 1 Score: 147 bits (371), Expect = 4.850e-39
Identity = 100/275 (36.36%), Postives = 145/275 (52.73%), Query Frame = 1
Query:    4 WHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRW-------VELFLTGKYEASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGS-VGVMSGNTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQ-----PHVYRERTKNSITFEELRDQGISTAATSFAE 789
            W I     PIL    RDE   W  K                 DT   +PE++FG S+L+L  EE+ + ++F+A  AL  W       VE+    K++         F S+         + +YD+T+ T Y GS V   SGN +E+          + WV+C    I+ V ++ +  PILFYDEVVLYED + D+GV  L+VK+RVMP CW++LLR+WLRVDGV+M+V DTRI+  F       P V RE T+   TF+ L  +G S+ ++++ +
Sbjct:   38 WRIESKKRPILKSHARDE---WEKKL----------------DT-AHLPEMVFGESSLELVHEETGIKIYFNAFDALLGWKQEPLPPVEVPAAAKWK---------FRSK----PSQQVILDYDYTFTTPYCGSEVLGPSGNQVEMELTTKATNQTLKWVACEDH-INMVAVQSKD-PILFYDEVVLYEDELADNGVSLLTVKVRVMPTCWFLLLRFWLRVDGVLMRVRDTRIYCAFESDVKRMPVVIRECTRREDTFKALAARGFSSDSSAYGD 277          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A7S2SEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SEG8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.110e-38
Identity = 79/226 (34.96%), Postives = 124/226 (54.87%), Query Frame = 1
Query:  139 MQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSRLHGGGDNIKL-QEYDWTWATDYAGSVGVMSGNTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPHVYRERTKNSITFEELRDQGISTAATSFAEAHNAIPFL 813
            +Q+PE+ + +S     +    + LHF A  AL  W E   +G    +  +++   T +       ++   EYDWT+ TD+ G V                 G+  AW  C   GI R ++ D+S PIL +D++VLYED +HD G + +SVK RVMPQCW++LLR + RVD VV++V +TR+FH+ G  +V+RE    ++++E+L  QG S     + E +  +P L
Sbjct:   11 VQLPEMPYESSLNVSFEGPGGIRLHFGAEAALRAWAEAQRSGAARDAVTKVAA--TRQWQSRAVEVEAADEYDWTFFTDWPGDV----------------LGAPAAWEECASSGIQREMVADRSAPILLFDDLVLYEDELHDFGDMSVSVKFRVMPQCWFLLLRCFCRVDNVVIRVHETRMFHRVGDEYVHREDQHRTVSWEDLASQGRSVDPKDYKEVNRVVPTL 218          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: B8LRL8_PICSI (Uncharacterized protein n=2 Tax=Pinaceae TaxID=3318 RepID=B8LRL8_PICSI)

HSP 1 Score: 140 bits (352), Expect = 5.420e-36
Identity = 99/272 (36.40%), Postives = 143/272 (52.57%), Query Frame = 1
Query:    4 WHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGKYEASKRRLSLPFTSR--LHGGGDNIKLQEYDWTWATDYAGSVGVMSGNTLEV---VSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKF-----GQPHVYRERTKNSITFEELRDQGISTAATSFAE 789
            W I     PIL+   R E   W          E  LG+         +PE++FG S+L+L  EE+ + +HF+A  AL  W       K EA    + +P  ++           + +YD+T+ T Y+GS  V+  N  +V   V A  T    + W+      I+ V L+ +  PILFYDEVVLYED + D+GV  L+VK+RVMP CW++LLR+WLRVDGV+M+V DTR++  F     G P V RER     TFE L  +G  + + ++ +
Sbjct:   60 WRIETMKRPILNSDARQE---W----------EKKLGSA-------HLPEMVFGESSLELVHEETGIKIHFNAFDALQGW-------KQEALPP-VEVPAAAKWKFRSKPSQQVILDYDYTFTTPYSGSE-VLEPNRKQVEMDVQASETS-ECLCWIQSEDR-INLVALQSKD-PILFYDEVVLYEDELADNGVSLLTVKVRVMPTCWFLLLRFWLRVDGVLMRVRDTRMYCAFESDSKGMPVVIRERCGREGTFEALAVRGFPSESCAYGD 299          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A2R6WRF9_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WRF9_MARPO)

HSP 1 Score: 139 bits (350), Expect = 1.040e-35
Identity = 88/239 (36.82%), Postives = 132/239 (55.23%), Query Frame = 1
Query:  145 MPEILFGNSTLQLHDEESSLVLHFDARGALTRW-------VELFLTGKYE-ASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGS-----------VGVMSGNTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQ-----PHVYRERTKNSITFEELRDQGISTAATSFAE 789
            +PE++FG+S+L+L  E + + +HF+A   L  W       VE+    K++ ASK    +              + +YD+T+ T Y GS           + V  G+  E  +A      A+ WV C    ID V L+ +  PILF+DEV+L+ED + D+G+  L+VK+RVMP+CW++LLRYWLRVDGV+M++ DTR+F KF       P V RER     TF+ L  +G    A ++A+
Sbjct:   77 LPEMVFGDSSLELKHEATGIKIHFNALDGLRGWKKEGLPPVEVPAAAKWKFASKPSQQV--------------ILDYDYTFTTPYCGSENLEPCGQTSALSVRDGSAAER-NAEADSHPALEWVECEEQ-IDLVSLQQRD-PILFFDEVILFEDELADNGISLLTVKVRVMPKCWFLLLRYWLRVDGVLMRLRDTRVFSKFSSDPKEVPVVLRERCVKEDTFQSLASRGYPKDAGAYAD 298          
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Match: A0A6I9QC77_ELAGV (TIP41-like protein isoform X1 n=10 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QC77_ELAGV)

HSP 1 Score: 137 bits (345), Expect = 3.600e-35
Identity = 94/274 (34.31%), Postives = 135/274 (49.27%), Query Frame = 1
Query:    4 WHIRGNHLPILSEAERDEEGAWLTKRAGGGNQESSLGNVVVKDTQMQMPEILFGNSTLQLHDEESSLVLHFDARGALTRW-------VELFLTGKYEASKRRLSLPFTSRLHGGGDNIKLQEYDWTWATDYAGSVGVMSGNTLEVVSAL*TKGSAVAWVSCPPGGIDRVLLEDQSIPILFYDEVVLYEDFIHDHGVVRLSVKIRVMPQCWYVLLRYWLRVDGVVMKVVDTRIFHKFGQPH-----VYRERTKNSITFEELRDQGISTAATSFAE 789
            WHI  +  PIL+     E   W          E  LG          +PE++FG S+L L  E+S L LHF+A  AL  W       VE+    K++   +    PF            + +YD+T+ T Y GS  +   N  + +S       ++ W  C    ID   L  +  PILFYDEVVLYED + D+GV  L+VK+RVMP CW++LLR+WLRVDGV+M++ DTR++  F   H     + RE      T + L  +G  + + S+ +
Sbjct:   32 WHIESSRQPILNSLALQE---W----------EEKLGT-------SHLPEMVFGESSLYLLHEDSGLKLHFNAFDALKGWKQEPLPPVEVPAAAKWKFRSK----PFQQ---------VILDYDYTFTTPYCGSEAI-EPNPEKAISE--DGCCSLCWEDCDER-IDLAALSSKE-PILFYDEVVLYEDELADNGVSLLTVKVRVMPSCWFLLLRFWLRVDGVLMRLRDTRVYCAFVSDHKAIPVILRESCWREATIQSLSAKGFPSDSASYGD 267          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK59_ECTSI2.170e-9752.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMW7_9STRA7.110e-4835.79TIP41-like family-domain-containing protein n=1 Ta... [more]
A0A7S2H1X7_9STRA2.500e-4434.03Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TH58_9STRA1.100e-4234.60TIP41-like protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A4D9D382_9STRA1.130e-4133.79PPM-type phosphatase domain-containing protein n=2... [more]
A0A0C9RYV1_9SPER4.850e-3936.36TSA: Wollemia nobilis Ref_Wollemi_Transcript_2233_... [more]
A0A7S2SEG8_9STRA5.110e-3834.96Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
B8LRL8_PICSI5.420e-3636.40Uncharacterized protein n=2 Tax=Pinaceae TaxID=331... [more]
A0A2R6WRF9_MARPO1.040e-3536.82Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A6I9QC77_ELAGV3.600e-3534.31TIP41-like protein isoform X1 n=10 Tax=Arecaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1contigC-tenellus_contig1:37376..41118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK59
PFAMsGAF_2,TIP41
Model size828
Max annot lvl2759|Eukaryota
KEGG koko:K17607
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons6
Evalue3.25e-20
EggNOG OGsKOG3224@1|root,KOG3224@2759|Eukaryota
DescriptionDNA damage checkpoint
Cds size294
COG categoryS
BRITEko00000,ko00001,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1.17.1prot_C-tenellus_contig1.17.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1 37687..40325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789108.348304-UTR-C-tenellus_contig1:37375..374631680789108.348304-UTR-C-tenellus_contig1:37375..37463Choristocarpus tenellus KU2346UTRC-tenellus_contig1 37376..37463 +
1680789108.3642044-UTR-C-tenellus_contig1:37636..376861680789108.3642044-UTR-C-tenellus_contig1:37636..37686Choristocarpus tenellus KU2346UTRC-tenellus_contig1 37637..37686 +
1680789108.4234097-UTR-C-tenellus_contig1:40325..405531680789108.4234097-UTR-C-tenellus_contig1:40325..40553Choristocarpus tenellus KU2346UTRC-tenellus_contig1 40326..40553 +
1680789108.4324515-UTR-C-tenellus_contig1:40950..411181680789108.4324515-UTR-C-tenellus_contig1:40950..41118Choristocarpus tenellus KU2346UTRC-tenellus_contig1 40951..41118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789108.37717-CDS-C-tenellus_contig1:37686..376921680789108.37717-CDS-C-tenellus_contig1:37686..37692Choristocarpus tenellus KU2346CDSC-tenellus_contig1 37687..37692 +
1680789108.389471-CDS-C-tenellus_contig1:37900..380701680789108.389471-CDS-C-tenellus_contig1:37900..38070Choristocarpus tenellus KU2346CDSC-tenellus_contig1 37901..38070 +
1680789108.4006531-CDS-C-tenellus_contig1:38201..383171680789108.4006531-CDS-C-tenellus_contig1:38201..38317Choristocarpus tenellus KU2346CDSC-tenellus_contig1 38202..38317 +
1680789108.4105668-CDS-C-tenellus_contig1:40323..403251680789108.4105668-CDS-C-tenellus_contig1:40323..40325Choristocarpus tenellus KU2346CDSC-tenellus_contig1 40324..40325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1.17.1

>prot_C-tenellus_contig1.17.1 ID=prot_C-tenellus_contig1.17.1|Name=mRNA_C-tenellus_contig1.17.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=98bp
MQMPEILFGNSTLQLHDEESSLVLHFDARGALTRWVELFLTGKYEASKRR
LSLPFTSRLHGGGDNIKLQEYDWTWATDYAGSVGVMSGNTLEVVSAL*
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mRNA from alignment at C-tenellus_contig1:37376..41118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1.17.1 ID=mRNA_C-tenellus_contig1.17.1|Name=mRNA_C-tenellus_contig1.17.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3743bp|location=Sequence derived from alignment at C-tenellus_contig1:37376..41118+ (Choristocarpus tenellus KU2346)
AGTTGGCACATTCGAGGGAATCATCTGCCTATTCTCAGCGAAGCCGAGCG CGATGAAGAGGGTGCATGGCTTACCAAAAGAGCAGGTGGTTGGGTTGATG GTCAGTCCTCTCGTTCTGTTCCTCTTAGGGTTAGTCCACAATCTTACACA CCTTTTCACACAGTGTTCGTCTCTGTCATATAATTACGAACAACCACCTC GACCACGCTCTGCGTGACATGGCGCCTACTCTCCGTCTCAAATTTTGTGA CTCAAGAACAGGTGGTAACCAAGAATCATCATTGGGTAATGTGGTGGTGA AGGATACCCAAATGCAAGTGAGATATCATGTATACTTGATGGCCATGTGA TTCTCACTACTTGCTCCTCTCTTTAGCAATTAATATGACAAAGACTCAAA AAGGGATCAAGTTGCACAAGCGTTTTCATTGCAATGCAAGGTTAGAGTGC TGTGACGTAGCCAGTTTTACATCTACCATGAAAAATTCGCAAAGGCTCAT TGCGAACAACTTAACTCTTTTCCAGATGCCTGAGATTCTTTTTGGCAACA GCACCCTCCAGTTGCATGACGAGGAATCCAGTTTAGTGCTTCATTTTGAT GCCCGTGGGGCACTTACACGATGGGTGGAGTTATTCCTCACAGGAAAGTA TGAGGCAAGTAAAAGGAGACTGTCCCTTCCCTTTACAAGTCGCCTGTCGA GGCACAACTTGGGTACTGTACTGTGTGCTGAAGCTGTCAGTGCAGTTTAT TTTTTAGTGTATATTGATGTCAAAATTTCATTCCCCAGGTGATCAAGGTG CTAGAGGCAAAAGATTGGAGGGTCAGACACGGAGGTGGAGACAACATCAA GCTCCAGGAGTACGACTGGACATGGGCAACAGATTATGCAGGCTCTGTTG GTGTAATGAGTGGGAACACGCTGGAAGTGGTAAGCGCATTGTGTCTGATT TTTTTTTAAAGTAATGGGCTCATCGATCTCACGGTGTCAGTACCACATTC TATATTGCCCCACATCAGGGTATGATTTCAGTGATAGGGCCCCATTTATA CTCGAGTTCATCTTGGTGGACATAGCCCTGTCAGAGATGAGGACATAACC TATTTTTTGCAATTACCTAGGTATTATCCCGAGAGGTATCACCATAAAGA GTAAAGGCTTCATTTAATATCAGATTTTGCCTATGAGGCCTATTTTTTTT GTGTGAAAATCTATGTACTTCAAAGGTGTTTATCAAATCCGAATCCCGCT TAAGATATTTACTTTAGGGCACAGGTCACTTGTGTTGTCTTAAAAAACCG ACTGAACTGAACTAAACAGTTGCTCTTTTGTTATTGTGGATAAGTTCCCA TGTAGCAGTATCCTCGTGTGCAACTACTACTTTTTGTGAAGCACCACACA ACTCTAGTCAATTTCATTTTTAGGTTTCATGGAGAAAGCTCTTTAGGGGT GTTTATGAGGGCTTGTTGTGACCAGCAATGGGGATGACCATAGCGCAATA ATGCAACCTCTTGGTGCCACTGAACACTACATGTCATCCATCCAACTCAA CTTCACTGGTTTTTTCCCATCCAAACAACATTAACCTGCCCAGCATTCAC CAACCTCACTAGGAGCATGATGATGACTGTTACTATGAAAAAATGTAGCA GTGAGTAACAGCTTACTGTTTCTTATGAAATATCTACCTACACCTAATAC TGTTAATGATAGCTTTAATTACGATAGTACTATACAAGGAATACAAATCT CAAAAGTGTTTTCAAGATGTCTAGTCCTCAGGGTAGGTCTGACCAATGTC TCCAACTATGCCTCAAAAAATCCTGAACAGTTTGCTCAAAATTGCTGTTA CAGTTTTTAATTACCCTGGTTCCTGCATTCTTGAGCATTTGAAAGACACA TTTGGACCAATCCACCACTGAAAGTAGGAAACAAGGGGTATGTGACATGC AAGAGACACACTGTAACTAACAGTCCAGAGGTTGGCAAAATGGTTGATCA GATGGCCTACTTATGCAGAGGTATTAATAGTTGCTTACAGAGTGTTGAAA TGCTTTATTTTAAAAATATGTGATAGTTTTGTGAAGAATGAACACTATAT TCCTCTAGATATCTCTTATCTCCAACACAGTTCTTTTATTCAAACTCAAA TTCAAGTATACTGTCTACTGTCTACTGTGTGGAGGAGAGTTCTTGGACAG GTTGGTGATCATCAACTGCCTGACTTGTGCACACGAAGGACTTGCACACA CCCTTCAGTACTCAACACAGTCAAACTCAGTACCCCATATATACCCCTAA CAAACAGCTTCACCCACAGCCCTGTGGTTCACAAGTGGGAAGGGGAAAGG TTGATGCATCCAATAAAAGCTTGGTATTGATATTAAAATAGATCTAACCT ACACAAAGAAAAAAAATAGTTCACGAAACTGCCGGGAAAACAGAACCTTC ACATTCTAACTCTTGACTACTTCTACCAAAGACCACTTCTACAGTGATGT AGTCGTGTCAAGTTAGTTGGGGTTTAGTCAGTGGTAGAGTAGTGTGAGTG CAAAAGAAAGTGAAGATGGTATGAAAGATGCATCTTTTACTGCCATCAAA GTAACAAAGCTGCCATATCAACCCCCAACAATTAGTCGGCAAATATTTCC GATATTTGTCAAAATTGGCAGCCCATGCAATTTTGGTTATTTTTACACCC CTGCCACTTAGTATCATACCCTGATCTGGTCAGTTACCTGCATATTTCAA AGGCGCAGAATGGAGAGGAATCCTGACACGATGAAAATTCCAAACACATG ATACTACCTCTATCTTTTTGAGTAGTATTAATAGCTGAGGTCGTACTTGA ATTTTGAAAGTTCTGTAATGTCGCTGCCCAAAGTAATACTTTTTTTTTTC CTTGACTAATTGTTTAGGTGTCTCCAGGAGGTCTCTTGCCTTCTCCAGAG ACAAAGGGATCTGCTGTAGCCTGGGTTTCTTGCCCTCCAGGTGGTATAGA TCGCGTGCTACTTGAGGACCAGAGCATCCCCATACTATTCTATGATGAAG TGGTTCTTTATGAGGACTTCATTCATGACCACGGTGTTGTTCGCCTGTCA GTGAAGATTCGTGTGATGCCTCAATGTTGGTATGTGCTCCTCCGATATTG GCTGCGTGTGGATGGTGTGGTGATGAAGGTTTGTTGGATGTTGGAATTAC TAGTATTGCACTGCGCCATCTTCCCACATAATACGTAAGTCATCTCATTT GCATCCCACATCTTAGTAAGAGGTGTGATATATGTCCAATTAAGCAACCT CTATATAGTGGTGTGCTTGCTGCTTTTGACTTGTGCAGGTGGAACATGCA GCTAATTGTTTGATCTTGTTTTGCAGTCACCTGTTTTGTTTGCCCATATG CCTTACCTCACGTGCTGTACCTCACAGGTTGTCAACAACACTGATTGTGT TTCTTATGGAGTTGTGTTGCAGTGCTCCAAACTTGAGATGAACATCAATT CATCAAATGGTCTCTCCCTTCTGAGTGTTGGGCAATGATTATTCAACGCA TCGGTTTTGCCTTGTCCCATGCTAGGTGGTTGATACAAGAATCTTCCACA AGTTTGGGCAGCCTCATGTGTATCGGGAACGCACAAAGAACTCAATCACC TTTGAAGAGCTCCGTGATCAAGGAATCTCTACAGCTGCAACATCTTTTGC AGAAGCCCACAACGCTATACCATTCCTTAGACCAACAGAAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig1:37376..41118+

>mRNA_C-tenellus_contig1.17.1 ID=mRNA_C-tenellus_contig1.17.1|Name=mRNA_C-tenellus_contig1.17.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=294bp|location=Sequence derived from alignment at C-tenellus_contig1:37376..41118+ (Choristocarpus tenellus KU2346)
ATGCAAATGCCTGAGATTCTTTTTGGCAACAGCACCCTCCAGTTGCATGA
CGAGGAATCCAGTTTAGTGCTTCATTTTGATGCCCGTGGGGCACTTACAC
GATGGGTGGAGTTATTCCTCACAGGAAAGTATGAGGCAAGTAAAAGGAGA
CTGTCCCTTCCCTTTACAAGTCGCCTACACGGAGGTGGAGACAACATCAA
GCTCCAGGAGTACGACTGGACATGGGCAACAGATTATGCAGGCTCTGTTG
GTGTAATGAGTGGGAACACGCTGGAAGTGGTAAGCGCATTGTAG
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