mRNA_C-linearis_contig10.558.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.558.1
Unique NamemRNA_C-linearis_contig10.558.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2393181..2393687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size507
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.558.1prot_C-linearis_contig10.558.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2393257..2393664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.962564-UTR-C-linearis_contig10:2393180..23932561622927325.962564-UTR-C-linearis_contig10:2393180..2393256Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2393181..2393256 +
1690879627.769099-UTR-C-linearis_contig10:2393180..23932561690879627.769099-UTR-C-linearis_contig10:2393180..2393256Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2393181..2393256 +
1622927325.98592-UTR-C-linearis_contig10:2393664..23936871622927325.98592-UTR-C-linearis_contig10:2393664..2393687Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2393665..2393687 +
1690879627.7916002-UTR-C-linearis_contig10:2393664..23936871690879627.7916002-UTR-C-linearis_contig10:2393664..2393687Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 2393665..2393687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.9732592-CDS-C-linearis_contig10:2393256..23936641622927325.9732592-CDS-C-linearis_contig10:2393256..2393664Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2393257..2393664 +
1690879627.7796688-CDS-C-linearis_contig10:2393256..23936641690879627.7796688-CDS-C-linearis_contig10:2393256..2393664Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2393257..2393664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.558.1

>prot_C-linearis_contig10.558.1 ID=prot_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=136bp
MRERDGDRRHDDSNNCQAAFRHIAEPTACAIDALNFHSAWVQYGNISSGM
SPSPRTRSMLDGLLLEAIEPRPTKTDKTDKTDKHASSQFRLTSVAVHLIK
TITLPPRSIADELYSTPAYLATSLLRNDEDTIKKR*
back to top

mRNA from alignment at C-linearis_contig10:2393181..2393687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.558.1 ID=mRNA_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at C-linearis_contig10:2393181..2393687+ (Chordaria linearis ClinC8C monoicous)
CGAGTCGAACTCCTCGACCACCACGGCGTACGTCACGTTGTCCTTTACAC
GGTACACCTGGGTTCACAGCGGAGTCATGAGAGAAAGAGACGGAGACAGA
CGGCACGACGACAGCAACAATTGCCAAGCGGCCTTCCGTCACATTGCAGA
ACCAACCGCTTGTGCTATTGATGCCCTCAACTTCCATTCCGCTTGGGTAC
AATACGGCAATATTTCCTCCGGAATGTCCCCTTCTCCTCGGACTCGATCA
ATGCTGGATGGTCTCCTGCTTGAGGCAATCGAACCTCGGCCGACAAAGAC
AGACAAGACAGACAAGACAGACAAACATGCATCCTCCCAGTTCAGGCTAA
CGTCTGTCGCTGTTCATCTGATTAAAACGATCACCCTTCCTCCTCGCTCG
ATCGCAGATGAACTCTACAGTACCCCTGCCTATTTAGCCACTTCCCTTCT
CCGCAACGATGAAGACACAATAAAAAAAAGATAGCCATGAAGGCAGGCAA
CACCCCA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:2393181..2393687+

>mRNA_C-linearis_contig10.558.1 ID=mRNA_C-linearis_contig10.558.1|Name=mRNA_C-linearis_contig10.558.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at C-linearis_contig10:2393181..2393687+ (Chordaria linearis ClinC8C monoicous)
ATGAGAGAAAGAGACGGAGACAGACGGCACGACGACAGCAACAATTGCCA
AGCGGCCTTCCGTCACATTGCAGAACCAACCGCTTGTGCTATTGATGCCC
TCAACTTCCATTCCGCTTGGGTACAATACGGCAATATTTCCTCCGGAATG
TCCCCTTCTCCTCGGACTCGATCAATGCTGGATGGTCTCCTGCTTGAGGC
AATCGAACCTCGGCCGACAAAGACAGACAAGACAGACAAGACAGACAAAC
ATGCATCCTCCCAGTTCAGGCTAACGTCTGTCGCTGTTCATCTGATTAAA
ACGATCACCCTTCCTCCTCGCTCGATCGCAGATGAACTCTACAGTACCCC
TGCCTATTTAGCCACTTCCCTTCTCCGCAACGATGAAGACACAATAAAAA
AAAGATAGATGAGAGAAAGAGACGGAGACAGACGGCACGACGACAGCAAC
AATTGCCAAGCGGCCTTCCGTCACATTGCAGAACCAACCGCTTGTGCTAT
TGATGCCCTCAACTTCCATTCCGCTTGGGTACAATACGGCAATATTTCCT
CCGGAATGTCCCCTTCTCCTCGGACTCGATCAATGCTGGATGGTCTCCTG
CTTGAGGCAATCGAACCTCGGCCGACAAAGACAGACAAGACAGACAAGAC
AGACAAACATGCATCCTCCCAGTTCAGGCTAACGTCTGTCGCTGTTCATC
TGATTAAAACGATCACCCTTCCTCCTCGCTCGATCGCAGATGAACTCTAC
AGTACCCCTGCCTATTTAGCCACTTCCCTTCTCCGCAACGATGAAGACAC
AATAAAAAAAAGATAG
back to top