mRNA_C-linearis_contig10.473.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.473.1
Unique NamemRNA_C-linearis_contig10.473.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1002137..1002442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927325.5175936-CDS-C-linearis_contig10:1002136..10024421622927325.5175936-CDS-C-linearis_contig10:1002136..1002442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1002137..1002442 +
1690879627.5593848-CDS-C-linearis_contig10:1002136..10024421690879627.5593848-CDS-C-linearis_contig10:1002136..1002442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1002137..1002442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.473.1prot_C-linearis_contig10.473.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1002137..1002442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.473.1

>prot_C-linearis_contig10.473.1 ID=prot_C-linearis_contig10.473.1|Name=mRNA_C-linearis_contig10.473.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
DSTVDTTTTTTEDEEGDEDLEHDRIVESPSSAAVATANVVAGKTEERRAA
KPASVAWTLKDTQRPGYTPTFTPFYFTLVKALTGTATGKGSETGKRKRLD
K*
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mRNA from alignment at C-linearis_contig10:1002137..1002442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.473.1 ID=mRNA_C-linearis_contig10.473.1|Name=mRNA_C-linearis_contig10.473.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at C-linearis_contig10:1002137..1002442+ (Chordaria linearis ClinC8C monoicous)
GACAGCACCGTGGACACCACCACCACCACCACCGAGGATGAGGAGGGGGA
TGAGGACTTGGAGCACGACAGAATTGTAGAGTCGCCGTCGTCGGCGGCTG
TTGCGACTGCCAATGTTGTTGCGGGAAAAACCGAGGAGCGGCGTGCTGCG
AAGCCGGCGAGCGTTGCCTGGACTCTGAAGGATACCCAACGCCCAGGGTA
CACCCCGACATTCACCCCGTTCTATTTCACGTTGGTCAAGGCCTTGACCG
GCACCGCCACCGGCAAGGGAAGCGAAACTGGCAAGCGGAAGCGGCTCGAC
AAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:1002137..1002442+

>mRNA_C-linearis_contig10.473.1 ID=mRNA_C-linearis_contig10.473.1|Name=mRNA_C-linearis_contig10.473.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig10:1002137..1002442+ (Chordaria linearis ClinC8C monoicous)
GACAGCACCGTGGACACCACCACCACCACCACCGAGGATGAGGAGGGGGA
TGAGGACTTGGAGCACGACAGAATTGTAGAGTCGCCGTCGTCGGCGGCTG
TTGCGACTGCCAATGTTGTTGCGGGAAAAACCGAGGAGCGGCGTGCTGCG
AAGCCGGCGAGCGTTGCCTGGACTCTGAAGGATACCCAACGCCCAGGGTA
CACCCCGACATTCACCCCGTTCTATTTCACGTTGGTCAAGGCCTTGACCG
GCACCGCCACCGGCAAGGGAAGCGAAACTGGCAAGCGGAAGCGGCTCGAC
AAGTAGGACAGCACCGTGGACACCACCACCACCACCACCGAGGATGAGGA
GGGGGATGAGGACTTGGAGCACGACAGAATTGTAGAGTCGCCGTCGTCGG
CGGCTGTTGCGACTGCCAATGTTGTTGCGGGAAAAACCGAGGAGCGGCGT
GCTGCGAAGCCGGCGAGCGTTGCCTGGACTCTGAAGGATACCCAACGCCC
AGGGTACACCCCGACATTCACCCCGTTCTATTTCACGTTGGTCAAGGCCT
TGACCGGCACCGCCACCGGCAAGGGAAGCGAAACTGGCAAGCGGAAGCGG
CTCGACAAGTAG
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