mRNA_C-linearis_contig10.563.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.563.1
Unique NamemRNA_C-linearis_contig10.563.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:2416616..2417566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927323.7025099-CDS-C-linearis_contig10:2416615..24167591622927323.7025099-CDS-C-linearis_contig10:2416615..2416759Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2416616..2416759 +
1690879626.3964221-CDS-C-linearis_contig10:2416615..24167591690879626.3964221-CDS-C-linearis_contig10:2416615..2416759Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2416616..2416759 +
1622927323.7167547-CDS-C-linearis_contig10:2417338..24175661622927323.7167547-CDS-C-linearis_contig10:2417338..2417566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2417339..2417566 +
1690879626.4050848-CDS-C-linearis_contig10:2417338..24175661690879626.4050848-CDS-C-linearis_contig10:2417338..2417566Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 2417339..2417566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.563.1prot_C-linearis_contig10.563.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 2416616..2417566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.563.1

>prot_C-linearis_contig10.563.1 ID=prot_C-linearis_contig10.563.1|Name=mRNA_C-linearis_contig10.563.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
GVGRAAERSPAHIQEDHANPIQPPQQQRRAEGLGAHPLLLKQQQQQQQVQ
ATPTSCASALVATNGTNPANRPLAHTNEDSAPASGAGGGAGTARGATNGA
ASTSTPASNNGGAEAVADASRNGG
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mRNA from alignment at C-linearis_contig10:2416616..2417566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.563.1 ID=mRNA_C-linearis_contig10.563.1|Name=mRNA_C-linearis_contig10.563.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=951bp|location=Sequence derived from alignment at C-linearis_contig10:2416616..2417566+ (Chordaria linearis ClinC8C monoicous)
GGAGTGGGTCGAGCGGCGGAGCGCAGCCCTGCGCACATCCAGGAAGACCA
TGCGAATCCGATCCAGCCTCCACAGCAGCAGCGGCGCGCAGAGGGGTTGG
GCGCGCATCCGCTGCTGCTGAAGCAGCAACAGCAGCAGCAGCAGGTGAGG
GCATTGATTTGTTTTTTTCAAAAACAAAAAGTGTGACTCTTGAACGGAAA
GCGCCGGCGGACAAACAGCGGGCGTAGGAAGCAACGCCCTCCGTTTTGCC
CCTCACCCTCTTTGCGCCCCGTGTCGCCGGGCAAGCGTACTGCACCCAGA
GAAAAGTTGTGTGTGGAGCACTACCCACTACAATACACCGTTTGAATAAT
CAGCACCGTGTGAACACTTCTACCAGCACCGTGGTGATGGGCTTAAGCAG
GCAGCTACCCGAAACATTCACAATCCCAGAGACAAAACAATGAACGCTTG
GCGCGCCCGCGGTTTCTCCCCCCCCGCGCCCCCACGATCACCTAGACTGG
TTGGCCTCATCGGTTCTTCGTACAACTCGACACCCCTGGCGTGCGTCTCG
CTGCAACCAACCAGCTCAAAACACCAGCGGACGACCCCGTGAACATAGCC
CAGGAAAACGCCGTGTCAGATTCTTGGTGGGACCTGACACGGCATGCAGC
TTTGCCCACCCGCGAGACCCAAACCCATAACTCCCGCCGACCGCCGCACA
CAAAAACGATGCCTCTTCAACAGGTGCAAGCCACCCCCACGTCATGCGCG
TCGGCTCTTGTCGCCACCAACGGCACCAACCCCGCCAACAGGCCTCTCGC
TCACACCAACGAGGACTCAGCGCCGGCTAGCGGGGCCGGCGGTGGCGCTG
GCACGGCGCGAGGAGCGACGAACGGTGCCGCCAGCACATCGACTCCCGCA
TCGAACAACGGCGGCGCCGAGGCCGTCGCCGATGCCAGCCGGAACGGGGG
G
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Coding sequence (CDS) from alignment at C-linearis_contig10:2416616..2417566+

>mRNA_C-linearis_contig10.563.1 ID=mRNA_C-linearis_contig10.563.1|Name=mRNA_C-linearis_contig10.563.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig10:2416616..2417566+ (Chordaria linearis ClinC8C monoicous)
GGAGTGGGTCGAGCGGCGGAGCGCAGCCCTGCGCACATCCAGGAAGACCA
TGCGAATCCGATCCAGCCTCCACAGCAGCAGCGGCGCGCAGAGGGGTTGG
GCGCGCATCCGCTGCTGCTGAAGCAGCAACAGCAGCAGCAGCAGGGAGTG
GGTCGAGCGGCGGAGCGCAGCCCTGCGCACATCCAGGAAGACCATGCGAA
TCCGATCCAGCCTCCACAGCAGCAGCGGCGCGCAGAGGGGTTGGGCGCGC
ATCCGCTGCTGCTGAAGCAGCAACAGCAGCAGCAGCAGGTGCAAGCCACC
CCCACGTCATGCGCGTCGGCTCTTGTCGCCACCAACGGCACCAACCCCGC
CAACAGGCCTCTCGCTCACACCAACGAGGACTCAGCGCCGGCTAGCGGGG
CCGGCGGTGGCGCTGGCACGGCGCGAGGAGCGACGAACGGTGCCGCCAGC
ACATCGACTCCCGCATCGAACAACGGCGGCGCCGAGGCCGTCGCCGATGC
CAGCCGGAACGGGGGGGTGCAAGCCACCCCCACGTCATGCGCGTCGGCTC
TTGTCGCCACCAACGGCACCAACCCCGCCAACAGGCCTCTCGCTCACACC
AACGAGGACTCAGCGCCGGCTAGCGGGGCCGGCGGTGGCGCTGGCACGGC
GCGAGGAGCGACGAACGGTGCCGCCAGCACATCGACTCCCGCATCGAACA
ACGGCGGCGCCGAGGCCGTCGCCGATGCCAGCCGGAACGGGGGG
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