mRNA_C-linearis_contig10.523.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.523.1
Unique NamemRNA_C-linearis_contig10.523.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1753162..1754187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size290
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.523.1prot_C-linearis_contig10.523.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1753162..1754187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.897726-CDS-C-linearis_contig10:1753161..17532181622927322.897726-CDS-C-linearis_contig10:1753161..1753218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1753162..1753218 +
1690879626.1041746-CDS-C-linearis_contig10:1753161..17532181690879626.1041746-CDS-C-linearis_contig10:1753161..1753218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1753162..1753218 +
1622927322.9076831-CDS-C-linearis_contig10:1753329..17535021622927322.9076831-CDS-C-linearis_contig10:1753329..1753502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1753330..1753502 +
1690879626.1225805-CDS-C-linearis_contig10:1753329..17535021690879626.1225805-CDS-C-linearis_contig10:1753329..1753502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1753330..1753502 +
1622927322.9196649-CDS-C-linearis_contig10:1754129..17541871622927322.9196649-CDS-C-linearis_contig10:1754129..1754187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1754130..1754187 +
1690879626.1307626-CDS-C-linearis_contig10:1754129..17541871690879626.1307626-CDS-C-linearis_contig10:1754129..1754187Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1754130..1754187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.523.1

>prot_C-linearis_contig10.523.1 ID=prot_C-linearis_contig10.523.1|Name=mRNA_C-linearis_contig10.523.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=96bp
EEGGSSDQQEVETLHPFVQVRPASTQPAVGVRQVGRTGRPIGFQRGGVVP
CKVVVAGQCRYTTRLRHRVAALLENRRLPVGRHIGRRPLPPGHRTP
back to top

mRNA from alignment at C-linearis_contig10:1753162..1754187+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.523.1 ID=mRNA_C-linearis_contig10.523.1|Name=mRNA_C-linearis_contig10.523.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1026bp|location=Sequence derived from alignment at C-linearis_contig10:1753162..1754187+ (Chordaria linearis ClinC8C monoicous)
GAAGAAGGAGGGAGCTCTGACCAACAGGAGGTGGAAACTCTCCATCCGTT
CGTACAGGTAAAGTTGCGAGACGTTTGGTTCTCGAGTTTGTATTTTTGAT
GTGTTCACAAGGTGCCGTTTCCGAAATTCAAACCGTTTGAAGTGAGCGCG
GGTTGTTGCTTCCTCTAGGTTCGGCCAGCATCTACACAGCCGGCGGTGGG
GGTGAGACAAGTGGGGCGAACTGGCAGGCCTATTGGGTTTCAACGTGGTG
GAGTGGTGCCCTGCAAAGTTGTTGTTGCCGGGCAGTGTCGCTATACAACA
CGGCTTCGCCACAGGGTGGCGGCACTCCTCGAGAACAGGAGGTGCGAATT
CACCCTCTCATAATCTTGCCTGCCGCCGCCAAACTCTTGTGATCGACAAG
CGCCTATTGCACCCAGACGACAGTGCCCTAGCCTAGGAGAGAAGCTGTGG
CGTTGTGTTTGCGAGGTGGTAGGGTACCAAGCTGGCGGTTACTGTCCTTG
TCCAAAGTACGCGGCCGTACCGACACACTCGCTCGCGCTTATGGTACGCT
GCAGGCGCCTTGTTGGTGTGTCCGTCTGCTGTACGTAAAATGGTCAACCG
CCCTTTCACCGTGCGTGCTTTTGGGCCAAGCACGCGTTGTGAAGGAGTTG
ATACTGTCGAGGGGGGAGATAGATGAAAGCACCGAAAACAGAGGAGATGG
GGGGATGAAGCTCTCGAGCGGTTCTCTCCCTCTCCCTCCCTCTGTGACAC
AACACGCTGGGCTGCTTTCCCCCACAGCCGAGTGCTGACTGTACGTGCGT
ATGTAGCATCGTACACGTTCCTTTTCCTTGATCTGCACCCCTTTCCGTCC
GCATTCGACCGTAACCCCCCCCACCGAGCAGGCGCGCTTCCCGGGCATCA
CAACAGAGGTCAAACGATCGTTTCGATCGTCCTTCCCTTCCCCTCTCCCG
CAACTCTCGCCCCAGCAGGCTACCGGTAGGCAGGCACATCGGTAGACGAC
CCTTGCCGCCTGGACACCGGACACCT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:1753162..1754187+

>mRNA_C-linearis_contig10.523.1 ID=mRNA_C-linearis_contig10.523.1|Name=mRNA_C-linearis_contig10.523.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at C-linearis_contig10:1753162..1754187+ (Chordaria linearis ClinC8C monoicous)
GAAGAAGGAGGGAGCTCTGACCAACAGGAGGTGGAAACTCTCCATCCGTT
CGTACAGGAAGAAGGAGGGAGCTCTGACCAACAGGAGGTGGAAACTCTCC
ATCCGTTCGTACAGGTTCGGCCAGCATCTACACAGCCGGCGGTGGGGGTG
AGACAAGTGGGGCGAACTGGCAGGCCTATTGGGTTTCAACGTGGTGGAGT
GGTGCCCTGCAAAGTTGTTGTTGCCGGGCAGTGTCGCTATACAACACGGC
TTCGCCACAGGGTGGCGGCACTCCTCGAGAACAGGAGGTTCGGCCAGCAT
CTACACAGCCGGCGGTGGGGGTGAGACAAGTGGGGCGAACTGGCAGGCCT
ATTGGGTTTCAACGTGGTGGAGTGGTGCCCTGCAAAGTTGTTGTTGCCGG
GCAGTGTCGCTATACAACACGGCTTCGCCACAGGGTGGCGGCACTCCTCG
AGAACAGGAGGCTACCGGTAGGCAGGCACATCGGTAGACGACCCTTGCCG
CCTGGACACCGGACACCTGCTACCGGTAGGCAGGCACATCGGTAGACGAC
CCTTGCCGCCTGGACACCGGACACCT
back to top