mRNA_C-linearis_contig10.475.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.475.1
Unique NamemRNA_C-linearis_contig10.475.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1059373..1060403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size286
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927322.529088-CDS-C-linearis_contig10:1059372..10595141622927322.529088-CDS-C-linearis_contig10:1059372..1059514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1059373..1059514 +
1690879625.913727-CDS-C-linearis_contig10:1059372..10595141690879625.913727-CDS-C-linearis_contig10:1059372..1059514Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1059373..1059514 +
1622927322.5381734-CDS-C-linearis_contig10:1060261..10604011622927322.5381734-CDS-C-linearis_contig10:1060261..1060401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1060262..1060401 +
1690879625.9243577-CDS-C-linearis_contig10:1060261..10604011690879625.9243577-CDS-C-linearis_contig10:1060261..1060401Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1060262..1060401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.475.1prot_C-linearis_contig10.475.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1059373..1060401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.475.1

>prot_C-linearis_contig10.475.1 ID=prot_C-linearis_contig10.475.1|Name=mRNA_C-linearis_contig10.475.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=94bp
PTHNSPHTLVNTSQQQQQQEKQQQQQQQQPISAHAHHASSHTCATRKVLG
QQQLLLLHTPGNYRSAVYWYYCCSARPSPDSQLSQHMSRSRSSS
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mRNA from alignment at C-linearis_contig10:1059373..1060403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.475.1 ID=mRNA_C-linearis_contig10.475.1|Name=mRNA_C-linearis_contig10.475.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1031bp|location=Sequence derived from alignment at C-linearis_contig10:1059373..1060403+ (Chordaria linearis ClinC8C monoicous)
CCCACACACAACAGCCCACACACCCTCGTAAACACTTCACAGCAGCAGCA
GCAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATTTCAGCTC
ACGCACACCACGCTTCCTCACACACGTGCGCGACAAGGAAAGGTGAGAGG
ACAGACCCAGTGGCAAGTGCCCCGCCGCACGGGTAAGGTTCTGATGCCGC
GGCCCTCGAGGTGTGTTGCGGTCCGTGGCAGCCAATAATAGCGCGTGCAC
ATGTTTGTTTATACCACAGGCTCCGGCTGGGCGGTCCCATCTTTGTGTAT
GCTTGAGACCGGTAGCAACTGCCCGATTGATGGCCGCATGTGCGATACAC
CGGAGTAACACATGTCGTGAGATTGCTTCGTTACTTGCTGGCCCACCACG
GGGTGCTTTTTCTCTCTCGCTCCTCAGACAGAACACATATATATATATGC
ACCCGCCTTTGAAAAACTGCGTTTTTCATGTGCTGCTGCTGCTGCTGCTG
CAGTCTACGCTGGCTACGCTGGCGGGTGTTGTGCGTACTCCTACAGAAGG
AATAGTTTTGGTTCTCTTACCTGCGGCGCACACCACAAACCACCTGCTCC
CTCCCTGCTGTGTGCGCCGCGCGGTGCATATCATACAACAAGTTATTGCT
GGTTGTGGGTATCCATGGTTGATTGCATACCAGCATCCAGAATTTGCCTG
CGTGTCGAAATTCGCCATAAAAGCGAGTCTGGAACAGCACTTGGGAGCGA
CAAGACTGCAGCCCGCGGGCTTGCCCCACAGATACTAGGGCCCTTTTCAC
GCCAGAGCCAGAAACTGTACCGAAAGCTGACGACGCTGCACCTGCTGTGC
CCTTTGCTGCTGCTGACCGATGTCATGCCGCGTTCTCAGTTCTGGGGCAG
CAGCAGCTTTTGCTCTTGCACACACCGGGCAACTACCGTTCTGCTGTTTA
CTGGTACTACTGCTGTTCTGCCCGGCCCAGCCCAGATAGCCAGCTCTCTC
AGCACATGAGTCGGAGCCGCAGCAGCAGCAG
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Coding sequence (CDS) from alignment at C-linearis_contig10:1059373..1060403+

>mRNA_C-linearis_contig10.475.1 ID=mRNA_C-linearis_contig10.475.1|Name=mRNA_C-linearis_contig10.475.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at C-linearis_contig10:1059373..1060403+ (Chordaria linearis ClinC8C monoicous)
CCCACACACAACAGCCCACACACCCTCGTAAACACTTCACAGCAGCAGCA
GCAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATTTCAGCTC
ACGCACACCACGCTTCCTCACACACGTGCGCGACAAGGAAAGCCCACACA
CAACAGCCCACACACCCTCGTAAACACTTCACAGCAGCAGCAGCAGCAGG
AGAAGCAGCAGCAGCAGCAGCAGCAGCAGCCCATTTCAGCTCACGCACAC
CACGCTTCCTCACACACGTGCGCGACAAGGAAAGTTCTGGGGCAGCAGCA
GCTTTTGCTCTTGCACACACCGGGCAACTACCGTTCTGCTGTTTACTGGT
ACTACTGCTGTTCTGCCCGGCCCAGCCCAGATAGCCAGCTCTCTCAGCAC
ATGAGTCGGAGCCGCAGCAGCAGCTTCTGGGGCAGCAGCAGCTTTTGCTC
TTGCACACACCGGGCAACTACCGTTCTGCTGTTTACTGGTACTACTGCTG
TTCTGCCCGGCCCAGCCCAGATAGCCAGCTCTCTCAGCACATGAGTCGGA
GCCGCAGCAGCAGC
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