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Homology
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE) HSP 1 Score: 197 bits (501), Expect = 5.680e-53 Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 2
Query: 164 VAGVVPSPNRVYYVVDPKEVMAQNQSFMCPFLARSPQLLVPGMLKATFSTKSNRLCSVHFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLVAPKGG 490
VAGVVPSPNRVYYVVDPKEVM NQ+FMCPFLARSPQLLVPGMLKA+FSTKSNRLCSV FSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSL+A KGG
Sbjct: 498 VAGVVPSPNRVYYVVDPKEVMGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGG 606
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI) HSP 1 Score: 179 bits (453), Expect = 2.130e-47 Identity = 103/138 (74.64%), Postives = 113/138 (81.88%), Query Frame = 2
Query: 272 QLLVPGMLKATFSTKSNRLCSVHFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLVAPKGG-MPNPARSSSS-----------TARSPASTSAPALVGQDEGVLHSVLQDIREWRVSSTVVDDPSE 649
+LLVPGMLKA+FSTKSNRLCSV FSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSL+A KGG +P+ AR +S TA +P P VGQDEGVLHSVLQDIREWRVSSTV+DDP++
Sbjct: 310 ELLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPSAARDRASESSGAXXXXXXTAANP-----PPFVGQDEGVLHSVLQDIREWRVSSTVLDDPNQ 442
BLAST of mRNA_C-linearis_contig10.469.1 vs. uniprot
Match: A0A6H5KJS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS4_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.620e-25 Identity = 104/156 (66.67%), Postives = 117/156 (75.00%), Query Frame = 2
Query: 647 EGKSYLRVYPLNGETPGVTHFIGVLENLASAQAAAEGXXXXXXXX---ADTIEAARSTSSSATPIAGGAVDGEHSSSGLEAGASEGETSSDSASS--KGRVTFHEGSSRSSGSASGXXXXXXXXSRNHTGVRSGRLHSNTSGGGMTTSSDGDYSNS 1099
+GKSYLRVYPL+GET GVTHFIGVLENL +AQAA + XXXXXXXX + E S+S++++P A A GEHSS GLEAGASEGETSSDSASS KGRV FH+GSS SSGS XXXXXXX HTG RS RL SN S MTT SDG +S+S
Sbjct: 3 KGKSYLRVYPLSGETLGVTHFIGVLENLDTAQAARQXXXXXXXXXXGPSSIGEGPISSSAASSPTAA-AKGGEHSS-GLEAGASEGETSSDSASSAAKGRVKFHDGSSGSSGSXXXXXXXXXXRHHTHTGARSARLTSNNSMS-MTTGSDGGFSSS 155
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | mitochondrion |
| Exons | 5 |
| Model size | 1392 |
| Cds size | 1230 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927322.3760505-UTR-C-linearis_contig10:964161..964322 | 1622927322.3760505-UTR-C-linearis_contig10:964161..964322 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 964162..964322 - |
| 1690879625.8215375-UTR-C-linearis_contig10:964161..964322 | 1690879625.8215375-UTR-C-linearis_contig10:964161..964322 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig10 964162..964322 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927322.386776-CDS-C-linearis_contig10:964322..964554 | 1622927322.386776-CDS-C-linearis_contig10:964322..964554 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 964323..964554 - |
| 1690879625.8299015-CDS-C-linearis_contig10:964322..964554 | 1690879625.8299015-CDS-C-linearis_contig10:964322..964554 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 964323..964554 - |
| 1622927322.3953164-CDS-C-linearis_contig10:964987..965335 | 1622927322.3953164-CDS-C-linearis_contig10:964987..965335 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 964988..965335 - |
| 1690879625.8377247-CDS-C-linearis_contig10:964987..965335 | 1690879625.8377247-CDS-C-linearis_contig10:964987..965335 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 964988..965335 - |
| 1622927322.4045997-CDS-C-linearis_contig10:965924..966064 | 1622927322.4045997-CDS-C-linearis_contig10:965924..966064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 965925..966064 - |
| 1690879625.8460362-CDS-C-linearis_contig10:965924..966064 | 1690879625.8460362-CDS-C-linearis_contig10:965924..966064 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 965925..966064 - |
| 1622927322.413953-CDS-C-linearis_contig10:966542..966788 | 1622927322.413953-CDS-C-linearis_contig10:966542..966788 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 966543..966788 - |
| 1690879625.8566227-CDS-C-linearis_contig10:966542..966788 | 1690879625.8566227-CDS-C-linearis_contig10:966542..966788 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 966543..966788 - |
| 1622927322.4273813-CDS-C-linearis_contig10:967482..967746 | 1622927322.4273813-CDS-C-linearis_contig10:967482..967746 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 967483..967746 - |
| 1690879625.868384-CDS-C-linearis_contig10:967482..967746 | 1690879625.868384-CDS-C-linearis_contig10:967482..967746 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 967483..967746 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.469.1 >prot_C-linearis_contig10.469.1 ID=prot_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp
FKGEGRRDIIRVVLRHGRRRLFGFGNGYRRRRRQRWKCKRQGGRRCRCCG DGGGGCRGGAVPEPRVLRGGPKGGDGAKPVVHVPLPRQVSAAAGARDAEG DLQHQVEPLVQRALLLRPHRPGQAVGESGDAAGPCYPGHGGDDGRHARHG GRRRFVLGSPQGGHAESGSEQQQHRPFSGFNVGACVGGAGRRRSALGAAG HPRVESQLHGRRRPFGGQELPSRVPPERGNPGGDPLHRRPGEPCQRPSRR RRRRSSGGGSRRHDRGRPQHQLVRDAHRRGRRGWRALLVGSGGRGIRGGD VVGLGELEGKGHVPRGQQQKQRQRERGLGRRVRGVPQPHRGEIRASPQQH ERRRHDHQQRRRLLQLGVSVRALGLRDAPLLEARGQRQRQRRHQPVHQSR RPEAGQGVD* back to topmRNA from alignment at C-linearis_contig10:964162..967746- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.469.1 ID=mRNA_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3585bp|location=Sequence derived from alignment at C-linearis_contig10:964162..967746- (Chordaria linearis ClinC8C monoicous) TTCAAGGGGGAGGGGCGCCGCGACATCATCCGAGTCGTGCTCCGGCACGG
ACGGCGGCGACTCTTCGGCTTCGGCAACGGGTACAGGCGGCGGCGGCGGC
AGCGGTGGAAGTGCAAAAGGCAAGGCGGCCGCCGCTGCCGCTGCTGTGGC
GACGGCGGCGGCGGTTGCCGGGGTGGTGCCGTCCCCGAACCGCGTGTACT
ACGTGGTGGACCCAAAGGAGGTGATGGCGCAAAACCAGTCGTTCATGTGC
CCCTTCCTCGCCAGGTGGGTTGTGTGTTTGTGTGTTGGTGTGTGTGTTTT
ATTTTATTGTTGGGTTGGTTGTTGGTTTTTATAGATCAAAACGGCATCCA
AGAAAGAGCCTCCCCTCAAAGAGACAAATCCCTGAGTGGTGGATTAGCAG
TTCAATACAGTGACGTATTGTGGGATAGGTGGAGAAGAAAAACACTTAAA
ACTGGGAAAACGTCATCAACAACCCGTTGTTGACAGTCCCGTTGTTGTTG
GGTTGGTTTTTTGTTGTTGCAGTAGCGTGGTTGGCGGAAGAGGTGTCTTG
GACGGCGTTGTTTGTGTGTTGTGTGTCACCAAAGTAGTGTCGTTTCGGGG
TCGGTCGACGGACTTATTTCTTCTTTGGGGGGGTGCCGTGTTTGTTGAGG
ACCTTGCTCGTTTTCCATCGTTCGTTGCACGTGCTTGCATAGTTCTTGTC
ATGCACACTAGATCCTCGTCCATCGTTAGTTGCGTGTTCTGGGGTGTTCC
CAGAGGATTTTCTCAAGCCGGTGTGCGGTGGATCTGATCTGCTCTGATCT
GCTCCAACCAAAGCGAGAACGATGCACGATGTCCCGACCGACCGGCCACA
GCATTTCTCCGAACGCAACAATGCCGATGCCGACACACGACACCCCCCCC
CCCTACTGAACCACGACACGCCCCTTACCCAACACCACCCGCGACCGGAA
AACACCAGGTCTCCGCAGCTGCTGGTGCCCGGGATGCTGAAGGCGACCTT
CAGCACCAAGTCGAACCGCTTGTGCAGCGTGCACTTCTCCTTCGACCCCA
CCGTCCCGGCCAGGCAGTTGGCGAGAGCGGCGATGCTGCAGGGCCGTGCT
ACCCCGGGCATGGCGGGGATGATGGCCGGCATGCTCGGCATGGGGGGCGT
CGACGTTTCGTCCTTGGTAGCCCCCAAGGGGGGCATGCCGAATCCGGCTC
GGAGGTATGTATCACGTTGTACGCTTGCGGCTAGGTTTATGGCCAGCCTG
CTGCCCTTACCTGCCGTCGAACCTGTGCATGCGTGGTTAGCAACCCATCC
TCGGAAGAAGTTTCTGCCGGCATGCCGTGTAGCGTTGTTGTTTTTCCGAC
AGCACGAGGGGTCGATCGCAACGGTCGCTCCTGTGTTTTCGTTATGTTGC
GCCTTGAAACAAGAAGAAAAGGCACGAGTCACCCAACGCACGATGATCCA
TCTCTTGTTTTCCAAGCTGTTGTTGAGAGCCGTTTCGGCCACGGCGGTTC
ATTTTTGACAACATCCTCCCTTCGACGAGGCTAAACCGTGGTTGAAACAT
GGATGGTATGTAGCATTGGAAACGGTGTCCTTGATCTGCGAGAGACAGCG
CAGCCTCCGCCGGACGACTTAAGATGAAACCGCTCTAATTATCACCCCCT
ATAACCTCTCAATCCCTATCCTCAAACGGCAGCAGCAGCAGCACCGCCCG
TTCTCCGGCTTCAACGTCGGCGCCTGCGTTGGTGGGGCAGGACGAAGGCG
TTCTGCACTCGGTGCTGCAGGACATCCGCGAGTGGAGAGTCAGCTCCACG
GTCGTCGACGACCCTTCGGAGGGTGAGCGAAACGGTATTCCGACCCTTTT
TCGCATCGTGTACACAGCTTCTTTCCTTAGCTGGTCACAGCCAAAAGCAC
CCCAGACAAGTTGCTGCTCGAAATAGCAGCGTGCGTGTACATACGCCCCA
CCAGCAGTACAGAGAGGCGTTTCGCCGGATGCGTGCTGGGAACACGAACT
GGCACGTCGTGTGAAGGGATAGTTTCGGCATGAGTCAAACGTCGTGTAGC
ATAGATGCAACGAGAAGGCGACGAGAAGCACGTCAATTGCATCGGTTGTT
GTGCTCCGTCGTCGTGTGCGACAGACGAACGTAAAGCCCACTCGAGGCCC
GGCAGTCGCATAGAAAAGTGGCGTTGTTTTTTGATGTGTAGCGAGCTTCT
CTTGTTTCGAGCGGGGAAGCGCCGCTTCTCGTAAGCCGATGTGCGCGCAT
GCGGGCGTTGGTACAGACCCCAGCCCCAGGAATAGTTGTCGTTTTTTCCG
TCCCTTGCCTGCACCTCCACGTCACTCACATACCCCCCCCCCGCATGCCC
TATCCTGCCCCCTCCCCTCCTTCATCTTCCTCCGCGTGCCCCCCCCCCCC
TCCCTCAGCAGGCAAGAGTTACCTTCGCGTGTACCCCCTGAACGGGGAAA
CCCCGGGGGTGACCCACTTCATCGGCGTCCTGGAGAACCTTGCCAGCGCC
CAAGCCGCCGCCGAAGGCGCCGCAGCAGCGGCGGCGGCAGCCGCCGACAC
GATCGAGGCCGCCCGCAGCACCAGCTCGTCCGCGACGCCCATCGCCGGGG
GCGCCGTGGATGGCGAGCACTCCTCGTCGGGTCTGGAGGCCGGGGCATCC
GAGGGGGAGACGTCGTCGGACTCGGCGAGCTCGAAGGGAAGGGTCACGTT
CCACGAGGGCAGCAGCAGAAGCAGCGGCAGCGCGAGCGGGGGCTCGGACG
ACGGGTCAGGTGTGTGTGTGTGTGTGCGGGGAGGTGTTTTTTTTCGATGG
AAGTGGATGCCTGAGAGGGAATTTTGTCGTAGATTTATGGTGGCGTTTAG
TGCGCCAAAAACGGCAGTCTGGAGTCTCTGCTGGTTTGTGGTGGCGGTCT
ACTTGATACTCCGAGTATATAGTTGTAAGGTCAAGGTTAGCGCAAGCCTC
CCTTCTGCCTTGCTGAACCGCGAACGAGAGGGATGGCTTCTTTTTCTTCT
CCTTGACTGTTTCAACACGATACTTCCAAGTGTTAAGTGTTTAGTGTTCG
GTTTTGTCTTGTTGCCCCATGTATGAGCCACATCTCTCAAGGCTGCTCCG
GTGTCTCACACCCACCCCTGTAGCAACCCTATCCGTCCCGACAACCCTTG
CCCAACACCGACGACGAATCACATACACACACACACACACAGGGGGGTCC
CGCAACCACACCGGGGTGAGATCCGGGCGTCTCCACAGCAACACGAGCGG
CGGCGGCATGACCACCAGCAGCGACGGCGACTACTCCAACTCGGGGTCAG
TGTCCGGGCACTCGGGCTGCGAGACGCGCCGCTCCTCGAGGCGAGGGGGC
AGCGGCAGCGGCAGCGGCGGCACCAGCCCGTCCACCAGTCGCGCCGCCCC
GAAGCGGGGCAGGGCGTAGATTAAGAGAGGCCCGAGGGAGTGACGCTGAT
GAACGTAGGGAGGAAGGGGGGGTGGGGGGGGGTCTTGCCCGCGAACCGGA
GAGAGGAGATGATGACTGAGACGGAGGGTAGAGAGGCGGGGTCGAGAGAA
GACGAGACGGGAGGGTTGGCGGTGTAAGCGCGGGT back to topCoding sequence (CDS) from alignment at C-linearis_contig10:964162..967746- >mRNA_C-linearis_contig10.469.1 ID=mRNA_C-linearis_contig10.469.1|Name=mRNA_C-linearis_contig10.469.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at C-linearis_contig10:964162..967746- (Chordaria linearis ClinC8C monoicous) TTCAAGGGGGAGGGGCGCCGCGACATCATCCGAGTCGTGCTCCGGCACGG ACGGCGGCGACTCTTCGGCTTCGGCAACGGGTACAGGCGGCGGCGGCGGC AGCGGTGGAAGTGCAAAAGGCAAGGCGGCCGCCGCTGCCGCTGCTGTGGC GACGGCGGCGGCGGTTGCCGGGGTGGTGCCGTCCCCGAACCGCGTGTACT ACGTGGTGGACCCAAAGGAGGTGATGGCGCAAAACCAGTCGTTCATGTGC CCCTTCCTCGCCAGTTCAAGGGGGAGGGGCGCCGCGACATCATCCGAGTC GTGCTCCGGCACGGACGGCGGCGACTCTTCGGCTTCGGCAACGGGTACAG GCGGCGGCGGCGGCAGCGGTGGAAGTGCAAAAGGCAAGGCGGCCGCCGCT GCCGCTGCTGTGGCGACGGCGGCGGCGGTTGCCGGGGTGGTGCCGTCCCC GAACCGCGTGTACTACGTGGTGGACCCAAAGGAGGTGATGGCGCAAAACC AGTCGTTCATGTGCCCCTTCCTCGCCAGGTCTCCGCAGCTGCTGGTGCCC GGGATGCTGAAGGCGACCTTCAGCACCAAGTCGAACCGCTTGTGCAGCGT GCACTTCTCCTTCGACCCCACCGTCCCGGCCAGGCAGTTGGCGAGAGCGG CGATGCTGCAGGGCCGTGCTACCCCGGGCATGGCGGGGATGATGGCCGGC ATGCTCGGCATGGGGGGCGTCGACGTTTCGTCCTTGGTAGCCCCCAAGGG GGGCATGCCGAATCCGGCTCGGAGGTCTCCGCAGCTGCTGGTGCCCGGGA TGCTGAAGGCGACCTTCAGCACCAAGTCGAACCGCTTGTGCAGCGTGCAC TTCTCCTTCGACCCCACCGTCCCGGCCAGGCAGTTGGCGAGAGCGGCGAT GCTGCAGGGCCGTGCTACCCCGGGCATGGCGGGGATGATGGCCGGCATGC TCGGCATGGGGGGCGTCGACGTTTCGTCCTTGGTAGCCCCCAAGGGGGGC ATGCCGAATCCGGCTCGGAGCAGCAGCAGCACCGCCCGTTCTCCGGCTTC AACGTCGGCGCCTGCGTTGGTGGGGCAGGACGAAGGCGTTCTGCACTCGG TGCTGCAGGACATCCGCGAGTGGAGAGTCAGCTCCACGGTCGTCGACGAC CCTTCGGAGGCAGCAGCAGCACCGCCCGTTCTCCGGCTTCAACGTCGGCG CCTGCGTTGGTGGGGCAGGACGAAGGCGTTCTGCACTCGGTGCTGCAGGA CATCCGCGAGTGGAGAGTCAGCTCCACGGTCGTCGACGACCCTTCGGAGG GCAAGAGTTACCTTCGCGTGTACCCCCTGAACGGGGAAACCCCGGGGGTG ACCCACTTCATCGGCGTCCTGGAGAACCTTGCCAGCGCCCAAGCCGCCGC CGAAGGCGCCGCAGCAGCGGCGGCGGCAGCCGCCGACACGATCGAGGCCG CCCGCAGCACCAGCTCGTCCGCGACGCCCATCGCCGGGGGCGCCGTGGAT GGCGAGCACTCCTCGTCGGGTCTGGAGGCCGGGGCATCCGAGGGGGAGAC GTCGTCGGACTCGGCGAGCTCGAAGGGAAGGGTCACGTTCCACGAGGGCA GCAGCAGAAGCAGCGGCAGCGCGAGCGGGGGCTCGGACGACGGGTCAGGC AAGAGTTACCTTCGCGTGTACCCCCTGAACGGGGAAACCCCGGGGGTGAC CCACTTCATCGGCGTCCTGGAGAACCTTGCCAGCGCCCAAGCCGCCGCCG AAGGCGCCGCAGCAGCGGCGGCGGCAGCCGCCGACACGATCGAGGCCGCC CGCAGCACCAGCTCGTCCGCGACGCCCATCGCCGGGGGCGCCGTGGATGG CGAGCACTCCTCGTCGGGTCTGGAGGCCGGGGCATCCGAGGGGGAGACGT CGTCGGACTCGGCGAGCTCGAAGGGAAGGGTCACGTTCCACGAGGGCAGC AGCAGAAGCAGCGGCAGCGCGAGCGGGGGCTCGGACGACGGGTCAGGGGG GTCCCGCAACCACACCGGGGTGAGATCCGGGCGTCTCCACAGCAACACGA GCGGCGGCGGCATGACCACCAGCAGCGACGGCGACTACTCCAACTCGGGG TCAGTGTCCGGGCACTCGGGCTGCGAGACGCGCCGCTCCTCGAGGCGAGG GGGCAGCGGCAGCGGCAGCGGCGGCACCAGCCCGTCCACCAGTCGCGCCG CCCCGAAGCGGGGCAGGGCGTAGATTAAGGGGGTCCCGCAACCACACCGG GGTGAGATCCGGGCGTCTCCACAGCAACACGAGCGGCGGCGGCATGACCA CCAGCAGCGACGGCGACTACTCCAACTCGGGGTCAGTGTCCGGGCACTCG GGCTGCGAGACGCGCCGCTCCTCGAGGCGAGGGGGCAGCGGCAGCGGCAG CGGCGGCACCAGCCCGTCCACCAGTCGCGCCGCCCCGAAGCGGGGCAGGG CGTAGATTAA back to top
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