mRNA_C-linearis_contig1.118.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-linearis_contig1.118.1
Unique Name	mRNA_C-linearis_contig1.118.1
Type	mRNA
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)

Homology

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: D7FIZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ5_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 2.830e-146
Identity = 253/502 (50.40%), Postives = 281/502 (55.98%), Query Frame = 2

Query:   44 MEHRTAIGLFLALAV--NRPVAALNARPSVGARRVASTTSLRRTSVTLVDKLVDVDANLLHPDLSGDIEHHIQVASSVGVKQFVVPGSTVDDSRGALELAQQKPNVVFPTAGVHPYHVEGCGLLEDAMANIATLAALEQGDQRLRIEKRRSRALNLRLSLWDSIFTVWPCYMLFLARPAHILWCDAHFEPTFRRISTFLMRVYQVRVWFVSLILESCVPGVDTSNQAVCRAMLFVHPPFMSCPRGTWTTLAFAVCPPGADCILYFFQVVLASLPHQVLCRTWFARSSTVESSCPSLSFASPIFMSQTHASRLDLIRVRIIVRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHGLPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGHSKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGMEEI 1543
            MEHR+AIGLFL+LAV  NRP AALN R  +G       T+    +      +VDVDANLLH DLS DI+HHIQ+ASSVGVKQFVVPGSTV+DSRG+LELA++KPNVVF TAGVHPYHV+GCG LEDAMA+IATLAA E+                                                                                                                                                                                      RCVGECGLDYSEGFP+AELQ+PWFE+QVELAC LKKPLFLHERAAF DFSEVLRRYDA HGLPPCLVHCFTG+E+EL AYIDMGFF+SVAGGICREKSGA+LRAAVKR+PLDRLMVETDAPYLGF+GCRKGH KPKK+ PN PSALPAVVRVLAECLGLPFEEVA+AT +NSR FFGM  +
Sbjct:   25 MEHRSAIGLFLSLAVHLNRPAAALNTRLPIGRGVRGLHTTAAADAGESSSYIVDVDANLLHADLSNDIDHHIQIASSVGVKQFVVPGSTVEDSRGSLELARRKPNVVFSTAGVHPYHVQGCGSLEDAMASIATLAATEEA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RCVGECGLDYSEGFPAAELQLPWFERQVELACKLKKPLFLHERAAFVDFSEVLRRYDASHGLPPCLVHCFTGSEEELTAYIDMGFFVSVAGGICREKSGAALRAAVKRIPLDRLMVETDAPYLGFSGCRKGHDKPKKQNPNVPSALPAVVRVLAECLGLPFEEVAQATLQNSRQFFGMATL 345

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A835Z870_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z870_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.320e-72
Identity = 156/449 (34.74%), Postives = 201/449 (44.77%), Query Frame = 2

Query:  191 LVDVDANLLHPDLSGDIEHHIQVASSVGVKQFVVPGSTVDDSRGALELAQQKPNVVFPTAGVHPYHVEGCGLLEDAMANIATLAALEQGDQRLRIEKRRSRALNLRLSLWDSIFTVWPCYMLFLARPAHILWCDAHFEPTFRRISTFLMRVYQVRVWFVSLILESCVPGVDTSNQAVCRAMLFVHPPFMSCPRGTWTTLAFAVCPPGADCILYFFQVVLASLPHQVLCRTWFARSSTVESSCPSLSFASPIFMSQTHASRLDLIRVRIIVRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALH-GLPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGHSKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            LVDVDANL H  L+ D   HI +A  VGV+Q VVPGS + DS+ AL+LA++ P +++PTAG+HPY V+ CG LE AM+ +A L A                         D +FT                                                                                                                                                            CVGECGLD+SEGFP  ELQ+P+FE+QV+LA   +KPLFLHER A   F++VLR  +A   GLPPCLVHCFTG   EL+ Y+ MGF+I V G + ++  G  LR  +++VPLDRLMVETDAPYLGF GCRKGHS+PK++ PN PSALP VV+ +A+ +G+   +VA  +  N+R FFGM
Sbjct:   50 LVDVDANLCHEALAADAAVHIDMARDVGVRQMVVPGSDLADSKAALDLARKYPGILYPTAGIHPYCVKDCGELEPAMSTLAELLA-------------------------DPLFT------------------------------------------------------------------------------------------------------------------------------------------------------------CVGECGLDFSEGFPEPELQLPFFERQVQLAVETRKPLFLHERLASRPFTDVLRAANAAPPGLPPCLVHCFTGTGSELSVYLQMGFYIGVTGFLLKKPHGNVLRGCLQQVPLDRLMVETDAPYLGFPGCRKGHSQPKRQYPNVPSALPLVVQAVADAMGVSALDVAAHSTRNARKFFGM 317

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A5D6YB90_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB90_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.700e-53
Identity = 102/198 (51.52%), Postives = 128/198 (64.65%), Query Frame = 2

Query:  953 QTHA-SRLDLIRVRIIVRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHG--LPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCR-KGHSKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            +TH    L+ + V    R VGECGLDYS GFP AE Q  WF  Q+ELAC L++PLFLHER A  DF   +    A  G   PP +VHCFTG E+EL AY+  GF+I V G +CR++ GA LR  ++ VPL RL++ETDAPY+GF  CR +  + PKK+ PN PSALP V   +A  LGL  +EVA AT  N+R F  +
Sbjct:  143 ETHELEELEALAVLPECRAVGECGLDYSPGFPPAEPQREWFRAQLELACRLRQPLFLHERLAHDDFVATVASCQARFGDAFPPAVVHCFTGTERELRAYVARGFYIGVTGFVCRKELGAPLREMLRLVPLQRLVIETDAPYMGFPKCRGREPTDPKKQYPNVPSALPLVAETVAAALGLTAQEVATATRANARRFLRL 340

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: K3WCX9_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum TaxID=2052682 RepID=K3WCX9_GLOUD)

HSP 1 Score: 195 bits (496), Expect = 2.700e-53
Identity = 94/181 (51.93%), Postives = 124/181 (68.51%), Query Frame = 2

Query: 1001 RCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHG--LPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGH-SKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            R VGECGLDYS  FP A+LQ  WF+ Q++LAC L+KPLFLHER A  DF  ++++         PP +VHCFTGNE+EL  Y+  GF+I + G IC+++ GASLRA V+ +PL +L++ETDAPY+GF  CR+   S PKK+ PN PSALP VV  +A  LG   +E+A  T  N+R F  +
Sbjct:  107 RAVGECGLDYSPSFPDAKLQQEWFKVQLDLACRLQKPLFLHERLAHDDFMALIKQCQQKFNDYFPPVVVHCFTGNEQELREYVRQGFYIGITGFICKKEHGASLRAMVQHIPLQKLVIETDAPYMGFPKCRRYEPSHPKKQYPNVPSALPQVVEAIATALGKTPQEIALITKANARRFLRL 287

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A662WGG9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGG9_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.580e-51
Identity = 106/229 (46.29%), Postives = 146/229 (63.76%), Query Frame = 2

Query:  869 LCRTWFARSSTVESSCPSLSFASPIFMSQTHASRLDLIRVRIIVRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVL----RRYDALHGLPPCLVHCFTGNEKELAAYIDMG--FFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGHSKP-KKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            LCR +  +        P  + ASP   ++  A+  DL+ +   VR VGECGLDYS GFP+ ELQ  WF +Q+ LAC L+KPLFLHER A  DF +++    +++D     PP +VHCFTGNE+EL AY+  G  ++I V G IC+++ GA+LR  V+ VPLDRL++ETDAPY+GF  CR+      KK+ PN PSALP VV+ +A  LG   +E+ + T  N+R F  +
Sbjct:  111 LCRQYPTQLFPTAGVHPYHALASPT--TEELATLRDLLELGE-VRAVGECGLDYSPGFPAPELQKKWFVEQLALACRLRKPLFLHERLAHEDFLKLVDDATKQFDGY--FPPAVVHCFTGNERELQAYLARGDDWYIGVTGFICKKQHGAALREMVRHVPLDRLVLETDAPYMGFPKCRRDEPNDRKKQYPNVPSALPQVVQAVAAALGRSPQEIGKITKANARRFLRL 334

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: W4GIL0_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GIL0_9STRA)

HSP 1 Score: 189 bits (481), Expect = 7.270e-51
Identity = 96/182 (52.75%), Postives = 123/182 (67.58%), Query Frame = 2

Query:  998 VRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHGLPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVKR--VPLDRLMVETDAPYLGFTGCRKGH-SKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            V  VGECGLDYSEGFPS +LQ+ WF  Q+ LA  L+KPLFLHER A   F E L  +  +  LPP  VHCFTG   E A YI MGF+I + G +C++  GA+L++ +    +PLDRL+VETDAPY+GF GCR    S PK++ PN P++LP VV+ +A CLG+   EVAR T  N+R F  +
Sbjct:  135 VVAVGECGLDYSEGFPSPDLQLEWFGPQLSLAVSLQKPLFLHERLAHKAFVEALTPH--IPTLPPACVHCFTGTADEAAVYIGMGFYIGITGFVCKQPHGAALQSMLSSGVLPLDRLVVETDAPYMGFPGCRSFEPSGPKRQFPNVPTSLPHVVQAIAGCLGVSAAEVARVTTRNARQFLRL 314

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A075LY60_PHYSO (TatD related DNase n=1 Tax=Phytophthora sojae TaxID=67593 RepID=A0A075LY60_PHYSO)

HSP 1 Score: 189 bits (481), Expect = 1.040e-50
Identity = 99/184 (53.80%), Postives = 124/184 (67.39%), Query Frame = 2

Query:  998 VRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHG--LPPCLVHCFTGNEKELAAYIDMG--FFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGH-SKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            VR VGECGLDYS  FP  E Q  WF +Q+ LAC LKKPLFLHER A  DF +++    A  G   PP +VHCFTGNE+EL AY+  G  ++I V G IC+ K GA+L+  VK VPL+RLM+ETDAPY+GF  CR+   S PKK+ PN PSA+P V + +A  LG   +EVA+ T  N+R F  +
Sbjct:  145 VRAVGECGLDYSPSFPEPEFQKKWFAEQLLLACELKKPLFLHERLAHQDFIQLIDEATAKAGGYFPPAVVHCFTGNEEELKAYVARGDDWYIGVTGFICK-KQGAALQEMVKHVPLERLMLETDAPYMGFPKCRRAEKSDPKKQYPNVPSAMPLVAQAVATALGRSPQEVAKITRANARRFLRL 327

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A485LL64_9STRA (Aste57867_22335 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LL64_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.080e-50
Identity = 97/179 (54.19%), Postives = 121/179 (67.60%), Query Frame = 2

Query: 1007 VGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHGLPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVK--RVPLDRLMVETDAPYLGFTGCRKGHSKPKKRT-PNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            VGECGLDYSEGFPS E Q+ WF  Q+ LA  L+KPLFLHER A   F + LR ++A   LPP  VHCFTG   E   Y+ MGF+I + G +C+   GA L+  +K   +PLDRL+VETDAPY+GF  CR   S   KR  PN P++LP VV+V+A+CLGLP  +VARAT  N+R F  +
Sbjct:  130 VGECGLDYSEGFPSPEHQLAWFLPQLSLAVTLQKPLFLHERLAHAPFVDALRLHEA--NLPPACVHCFTGTADEAKVYLSMGFYIGITGFVCKPH-GADLQTMLKDGTLPLDRLVVETDAPYMGFPNCRAFESTAAKRQYPNVPTSLPKVVQVIADCLGLPPADVARATTRNARRFLRL 305

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: H3G9I0_PHYRM (TatD related DNase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9I0_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 1.110e-50
Identity = 95/186 (51.08%), Postives = 125/186 (67.20%), Query Frame = 2

Query:  998 VRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLR----RYDALHGLPPCLVHCFTGNEKELAAYIDMG--FFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKGHSK-PKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            VR VGECGLDYS  FP  E Q  WF +Q+ +AC LKKPLFLHER A  DF +++     R+D     PP +VHCFTGNE+EL AY+  G  ++I + G IC+ K GA+L+  VK +PLDRL++ETDAPY+GF  CR+   K PKK+ PN PSALP V +++A  L    +E+A+ T  N+R F  +
Sbjct:   57 VRAVGECGLDYSPSFPEPESQKKWFAEQLTMACKLKKPLFLHERLAHQDFIQLIEEASNRFDGY--FPPAVVHCFTGNEEELKAYVARGDNWYIGITGFICK-KQGAALKEMVKLIPLDRLVLETDAPYMGFPKCRRAEPKDPKKQYPNVPSALPQVAQIVATALNRSPQEIAKLTTANARRFLRL 239

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BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Match: A0A1V9YL96_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YL96_9STRA)

HSP 1 Score: 188 bits (477), Expect = 2.590e-50
Identity = 98/182 (53.85%), Postives = 121/182 (66.48%), Query Frame = 2

Query:  998 VRCVGECGLDYSEGFPSAELQVPWFEKQVELACMLKKPLFLHERAAFGDFSEVLRRYDALHGLPPCLVHCFTGNEKELAAYIDMGFFISVAGGICREKSGASLRAAVK--RVPLDRLMVETDAPYLGFTGCRKGH-SKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGM 1534
            V  VGECGLD+S GFPS ELQ+ WF  Q+ELAC L+KPLFLHER A   F E L        LPP +VHCFTG   E   Y+ +GF+I + G IC+   GA L+A ++   VPLDRL+VETDAPY+GF  CR+   + PK+++PN P+ALP VV  LA CL LP  EVA AT  N+R F  +
Sbjct:  136 VVAVGECGLDFSPGFPSPELQLAWFVPQLELACALQKPLFLHERLAHAPFLEALTG----RSLPPAVVHCFTGTAAEARVYVALGFYIGITGFICKPH-GAELQALLRDGAVPLDRLVVETDAPYMGFPRCRQLEPTHPKRQSPNVPTALPRVVEALAACLDLPVREVAAATTYNARKFLRL 312

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot

BLAST of mRNA_C-linearis_contig1.118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FIZ5_ECTSI	2.830e-146	50.40	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835Z870_9STRA	1.320e-72	34.74	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A5D6YB90_9STRA	1.700e-53	51.52	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
K3WCX9_GLOUD	2.700e-53	51.93	Uncharacterized protein n=2 Tax=Globisporangium ul...	[more]
A0A662WGG9_9STRA	6.580e-51	46.29	Uncharacterized protein n=2 Tax=Nothophytophthora ...	[more]
W4GIL0_9STRA	7.270e-51	52.75	Uncharacterized protein n=8 Tax=Aphanomyces astaci...	[more]
A0A075LY60_PHYSO	1.040e-50	53.80	TatD related DNase n=1 Tax=Phytophthora sojae TaxI...	[more]
A0A485LL64_9STRA	1.080e-50	54.19	Aste57867_22335 protein n=1 Tax=Aphanomyces stella...	[more]
H3G9I0_PHYRM	1.110e-50	51.08	TatD related DNase n=1 Tax=Phytophthora ramorum Ta...	[more]
A0A1V9YL96_9STRA	2.590e-50	53.85	Uncharacterized protein n=1 Tax=Achlya hypogyna Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig1	contig	C-linearis_contig1:1713757..1718274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	443.4
Seed ortholog evalue	1.5e-121
Seed eggNOG ortholog	2880.D7FIZ5
KEGG ko	ko:K03424
Hectar predicted targeting category	signal peptide
EggNOG free text desc.	hydrolase activity, acting on ester bonds
EggNOG OGs	COG0084@1,KOG3020@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000
Exons	8
Model size	2206
Cds size	1503
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig1.118.1	prot_C-linearis_contig1.118.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig1 1713800..1717614 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927278.2024674-UTR-C-linearis_contig1:1713756..1713799	1622927278.2024674-UTR-C-linearis_contig1:1713756..1713799	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig1 1713757..1713799 +
1690879600.692529-UTR-C-linearis_contig1:1713756..1713799	1690879600.692529-UTR-C-linearis_contig1:1713756..1713799	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig1 1713757..1713799 +
1622927278.3148673-UTR-C-linearis_contig1:1717614..1718274	1622927278.3148673-UTR-C-linearis_contig1:1717614..1718274	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig1 1717615..1718274 +
1690879600.800818-UTR-C-linearis_contig1:1717614..1718274	1690879600.800818-UTR-C-linearis_contig1:1717614..1718274	Chordaria linearis ClinC8C monoicous	UTR	C-linearis_contig1 1717615..1718274 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig1:1713757..1718274+
coding sequence from alignment at C-linearis_contig1:1713757..1718274+

protein sequence of mRNA_C-linearis_contig1.118.1

>prot_C-linearis_contig1.118.1 ID=prot_C-linearis_contig1.118.1|Name=mRNA_C-linearis_contig1.118.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=501bp
MEHRTAIGLFLALAVNRPVAALNARPSVGARRVASTTSLRRTSVTLVDKL
VDVDANLLHPDLSGDIEHHIQVASSVGVKQFVVPGSTVDDSRGALELAQQ
KPNVVFPTAGVHPYHVEGCGLLEDAMANIATLAALEQGDQRLRIEKRRSR
ALNLRLSLWDSIFTVWPCYMLFLARPAHILWCDAHFEPTFRRISTFLMRV
YQVRVWFVSLILESCVPGVDTSNQAVCRAMLFVHPPFMSCPRGTWTTLAF
AVCPPGADCILYFFQVVLASLPHQVLCRTWFARSSTVESSCPSLSFASPI
FMSQTHASRLDLIRVRIIVRCVGECGLDYSEGFPSAELQVPWFEKQVELA
CMLKKPLFLHERAAFGDFSEVLRRYDALHGLPPCLVHCFTGNEKELAAYI
DMGFFISVAGGICREKSGASLRAAVKRVPLDRLMVETDAPYLGFTGCRKG
HSKPKKRTPNCPSALPAVVRVLAECLGLPFEEVARATGENSRAFFGMEEI
*

mRNA from alignment at C-linearis_contig1:1713757..1718274+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig1.118.1 ID=mRNA_C-linearis_contig1.118.1|Name=mRNA_C-linearis_contig1.118.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4518bp|location=Sequence derived from alignment at C-linearis_contig1:1713757..1718274+ (Chordaria linearis ClinC8C monoicous)
GGTGCGTGCGCTGTGAGCGCCGGTCGTGTAGCGACGTGGAGTAATGGAGC
ATCGTACCGCTATTGGTCTTTTCTTGGCGCTGGCTGTCAATCGTCCAGTG
GCAGCTCTGAACGCCCGCCCTTCCGTCGGAGCGCGACGAGTGGCATCAAC
AACAAGCCTCCGCAGGACCAGCGTGACACTGGTCGACAAGCTCGTCGATG
TCGACGCTAATCTGCTGCACCCCGACCTCTCCGGTGACATTGAACATCAT
ATTCAGGTTCTTATTGCGCAACATGAAACTATGACAAGTAGTGGGTGGTA
TATGGTGCTAACGCCTCTGAGCCCGTGGTTACTCCCGAATAGACTCGCAG
ATAGACCATGTGACCAACATCTAAATCTCAATCTTGACCGTTTGATGCAC
ACGTTGCGCATTACACGTTCGGCAATGCATTGAGTTTCGTAGAGGACGGC
GTCGAATTATCCCAGGGCACTTGGGTCTTAGGATATGACCTAAGTTGCGG
GCAAGAAGAGGAAACAAAGGTTAACCCACACCCCAGAACCAGCCAGCATA
CATGACCATTCGGGATCTAATGAACCAGAGTGGTCGGACGAACGGGAGGA
AAGATGGTCTGACGCGCGTTGTGCCCCGGCAATGTAAGGCGTTGTACCCT
TGTACCGAGCCCTCTAGCGAAAATGGCCACTATCTTGATGCGCAAGTGCC
TGAGGAACCCTGAATGTGGGGGTGGAAGGGGGGCAACGCCACCCGCCTTA
CCAGCCCTGATCGTCGAAGCAGCGGCTGCTGTTTTGAGTCCAGAGTACAC
AAAGATTGGAAGATTGGTCGATTTCCGTACCTGGGCGGCGTCCTGAACAA
ATATTCCAAGCTCGTGTGCGAGATTAACCGCGGCTCCAAAACCACGTGGC
TATCCCATTAGCTATTGGGCCGCTACTGGTTGCGCGCCATGAAGACTCAT
TTTGTTTGATTGCTGAGGCAGGGCGAACACCTGGGCATATATCTCTTTCG
CTGCACTTCGTGATTTTTTTTCAACGTGTAGGTTGCCTCTTCAGTGGGAG
TGAAGCAGTTTGTGGTGCCTGGCAGCACCGTCGACGACAGTCGTGGTGCG
TTGGAACTGGCGCAACAGAAACCAAACGTGAGTGCGGCCGGGGGCAAATC
TCAAGCGCCGTATTGTCCTAATAGATTCGTTTTGCAAGCGAGCCACAGCC
AAAGGGCCAGATCTTCAATCCCCCGCCTGTTGGTTATCGTGAAATGATGT
TCTATAGGCCTACAATACACGTATACAGAAGGATGTGTTCCTTTGTTGCA
CGCGTGCATCCTGCGTTCAATAACATTACACTATCTCATGCCTAGAAAGG
AAGTAACGGTGCGACACGAAACCTGCTTTCAGCGCAGTCGAGCCTTTTTG
GCGCACCTTGAGCCGCTGTAACCCCTTTCATGTGTCATTTGCTTGTCGCG
CGATTTGCCAAAGGTTGTGTTCCCGACCGCGGGTGTCCACCCGTATCACG
TGGAGGGGTGCGGCTTGCTTGAGGATGCCATGGCAAATATAGCTACCCTT
GCAGCTTTGGAACAAGGTGATCAACGCTTGCGAATCGAGAAGCGTCGTTC
TCGCGCACTCAACCTCAGACTCTCCTTGTGGGATTCGATTTTCACGGTAT
GGCCGTGTTACATGTTGTTTTTAGCAAGGCCTGCTCATATCCTCTGGTGT
GATGCCCATTTTGAACCCACATTTCGGAGGATATCAACATTTTTGATGAG
AGTCTACCAAGTCCGGGTATGGTTTGTCTCGTTGATCTTGGAAAGCTGTG
TTCCCGGGGTGGATACATCCAACCAGGCCGTTTGTCGTGCAATGCTTTTC
GTGCACCCCCCGTTCATGAGTTGCCCTCGGGGCACATGGACTACGCTTGC
GTTTGCCGTGTGCCCTCCCGGGGCCGACTGTATTTTGTACTTTTTTCAAG
TAGTCTTGGCTTCTTTGCCCCACCAGGTGCTTTGCCGCACTTGGTTTGCG
CGGTCTTCTACGGTGGAAAGCTCGTGCCCTTCTCTTTCGTTCGCCTCTCC
TATCTTCATGTCCCAAACGCATGCCTCTCGACTCGATCTGATCCGTGTGC
GTATCATAGTCCGTTGCGTGGGGGAATGTGGATTGGATTACTCGGAGGGC
TTTCCTTCGGCTGAACTGCAGGTCCCATGGTTTGAGAAACAGGTCGAGCT
TGCGTGCATGGTGAGCAAAGACATAAAGCTGATACTGCTGTAGACATCGC
ACGCTTGTAATCTTCTTCGAGCTCAGGCGCGTGAAATATTTCAGGCTTTG
TTTGTTCCTGCACACGTAAGATGCTTGCTAACTTCGGACCACATGGAGCT
TCCTACTCCAAAGGTGAAAAAGAACATGTGATTCACGCTGGTTTACGTAG
CACCGACGTCTTGTCACAGTTGACCAATCCACAGCAGGAGGTTGATGCCC
GTTGTCTTTCGCAACCTTGACTGCAGCTGAAGAAGCCCCTGTTCCTTCAC
GAGCGTGCGGCATTCGGCGACTTTTCCGAGGTAAGGAAATCTCCTGAGCC
ACGGCCACGATTGTGTTGTATCCATCGGCTGTCAGACTCGACGGTTTCGA
TGAAAGATCCCACTTGACGGACGGCATCAGACGAGGTGTTGAAATCGAGC
TCGTGCGTCGCATCCAGCTGTTCGCAACCAGCCCACAAGCAACTGAGAAT
CATTTTATCGCGTCACCAGTGTGCTCACGTACCATTTTGCCTGGGTTCTC
GCGACAGGTCTTACGGCGATACGACGCCTTGCATGGTTTGCCTCCGTGCT
TGGTACATTGTTTTACGGGAAACGAAAAGGTGAGGAGATAAGTCAACCTC
TGGAAAGGTAACATCTGCAGCAGCGGAATGCCAGCATGCGTATTGAACAG
CTTTTTATCGGATGCGTGACTTGAGAACCGCGGATTCGCTGACTGACCCG
CGTTGCTCACATCCATTATTTCCCAAACGGGGCGCCACTCTTCAAAGGAG
CTGGCTGCTTACATTGATATGGGTTTCTTCATCAGCGTGGCTGGGGGTAT
CTGTCGGGAGAAGAGCGGCGCGTCACTAAGAGCAGCGGTAAGCTAGCTCC
GTGGAACCTCACTCTGTCGATTCCCCGGGTCGTTTTTCTCGCATTTCTAC
TCGATCGATGAGAAGTGCTTTGAATGCGACATGTATGTGCACCGGTGGTG
GTTGTGAAACTACGCAAGAGTTTACTTTGCTTTCAAGTGCCGTTTCAATA
TCAACGCAGTTTAGCTGCCCCACAGATCGTGTTATTTGCACGACGAAGCT
TTCCAGACTCCTCTCCGTGCTACTGTTTCGTGAACTAATTATGTTGGACT
TTTCCGCGCGAACTTCAGGTGAAACGCGTTCCATTGGACAGGCTCATGGT
AGAAACGGACGCTCCCTACCTTGGCTTCACAGGATGCCGAAAAGGACACA
GCAAACCGAAGAAACGGGTACGAGGGTACCTACGCAGATTTTTGTCTACA
TAGATTGATCCGTATTAGACACGTTTGAGTTTGCGCGAACGGCGTTTAGC
CCTCCGTGTTCTCCGGGCTGCTTGTTTCAAGGTTGTCTGTCCGTGCCATG
GGACAAAACACACTGTCTTGAGCTGGCGCCGGAAGTGCATTCAGAGGGTG
CGGCGCGTGAACGGCGCTTGCTACCTATGATATCATACCTGATTTGTTTT
GTGCTCTCCTCCCTTTTTTTTCGCAGACTCCGAACTGCCCTTCGGCACTG
CCAGCGGTGGTGAGAGTTTTGGCGGAATGTCTTGGGTTACCGTTTGAAGA
AGTCGCACGGGCGACGGGCGAGAATTCACGAGCCTTTTTCGGGATGGAAG
AAATCTAGGCCGCAACGGGGGAGCTGGCGAAAAAATAATGGAACTTAACT
TGAGTCCACCGTATGCATGAGGATGAATTTTGAACTTTTTTCGCATTCGC
GTTCGCTCTCGCTGGCGGCGTGACCGGTCTCTCCCGTAGCGGTAGATGGC
TGCGGCATTTCGGATTGTCGTGAAATGGGCCAGTCTACTCGATACTGACC
GACATCGCTGCTTGGAGATAGAGAGAAGAGAGAGAGGAGAGGCCCCGTGC
TGTGTATTCGTTTTTACCCCGTCTCCTACCAAGAAAGAGGGCACAGAGAA
ACGAACGTAAAGTAAAGCCCGCGTTTGTGGATCTAGCCAAGATAACAACA
AAAAGCGAAACGAAACGGACGGGACCGAACCGTAATGCCAAGGCCTGTAT
TCGAACGATAGGTAAGTTTATCGCCGAAAACATTGAATTTTGATGGACGG
CAATTTTGGCCCTCCGCGTTGTACTGGATGTACCTGCCGCGTGGGTATTA
TATTTTCCACGAAGCGGCGTGGAGACTCCCCGGACACTTTCATCGGGCAC
CAAGGAGGTGCAGTATCTTTCCTCGAATGTGTTTCGGCTTGGCCGAGTAA
ATAACCCCCATAACCCCCACGGACGAGAACATCGTAGTATCGCTTCAGAA
AGCAGGACCGACTACCAC

Coding sequence (CDS) from alignment at C-linearis_contig1:1713757..1718274+

>mRNA_C-linearis_contig1.118.1 ID=mRNA_C-linearis_contig1.118.1|Name=mRNA_C-linearis_contig1.118.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3006bp|location=Sequence derived from alignment at C-linearis_contig1:1713757..1718274+ (Chordaria linearis ClinC8C monoicous)
ATGGAGCATCGTACCGCTATTGGTCTTTTCTTGGCGCTGGCTGTCAATCG
TCCAGTGGCAGCTCTGAACGCCCGCCCTTCCGTCGGAGCGCGACGAGTGG
CATCAACAACAAGCCTCCGCAGGACCAGCGTGACACTGGTCGACAAGCTC
GTCGATGTCGACGCTAATCTGCTGCACCCCGACCTCTCCGGTGACATTGA
ACATCATATTCAGATGGAGCATCGTACCGCTATTGGTCTTTTCTTGGCGC
TGGCTGTCAATCGTCCAGTGGCAGCTCTGAACGCCCGCCCTTCCGTCGGA
GCGCGACGAGTGGCATCAACAACAAGCCTCCGCAGGACCAGCGTGACACT
GGTCGACAAGCTCGTCGATGTCGACGCTAATCTGCTGCACCCCGACCTCT
CCGGTGACATTGAACATCATATTCAGGTTGCCTCTTCAGTGGGAGTGAAG
CAGTTTGTGGTGCCTGGCAGCACCGTCGACGACAGTCGTGGTGCGTTGGA
ACTGGCGCAACAGAAACCAAACGTTGCCTCTTCAGTGGGAGTGAAGCAGT
TTGTGGTGCCTGGCAGCACCGTCGACGACAGTCGTGGTGCGTTGGAACTG
GCGCAACAGAAACCAAACGTTGTGTTCCCGACCGCGGGTGTCCACCCGTA
TCACGTGGAGGGGTGCGGCTTGCTTGAGGATGCCATGGCAAATATAGCTA
CCCTTGCAGCTTTGGAACAAGGTGATCAACGCTTGCGAATCGAGAAGCGT
CGTTCTCGCGCACTCAACCTCAGACTCTCCTTGTGGGATTCGATTTTCAC
GGTATGGCCGTGTTACATGTTGTTTTTAGCAAGGCCTGCTCATATCCTCT
GGTGTGATGCCCATTTTGAACCCACATTTCGGAGGATATCAACATTTTTG
ATGAGAGTCTACCAAGTCCGGGTATGGTTTGTCTCGTTGATCTTGGAAAG
CTGTGTTCCCGGGGTGGATACATCCAACCAGGCCGTTTGTCGTGCAATGC
TTTTCGTGCACCCCCCGTTCATGAGTTGCCCTCGGGGCACATGGACTACG
CTTGCGTTTGCCGTGTGCCCTCCCGGGGCCGACTGTATTTTGTACTTTTT
TCAAGTAGTCTTGGCTTCTTTGCCCCACCAGGTGCTTTGCCGCACTTGGT
TTGCGCGGTCTTCTACGGTGGAAAGCTCGTGCCCTTCTCTTTCGTTCGCC
TCTCCTATCTTCATGTCCCAAACGCATGCCTCTCGACTCGATCTGATCCG
TGTGCGTATCATAGTCCGTTGCGTGGGGGAATGTGGATTGGATTACTCGG
AGGGCTTTCCTTCGGCTGAACTGCAGGTCCCATGGTTTGAGAAACAGGTC
GAGCTTGCGTGCATGGTTGTGTTCCCGACCGCGGGTGTCCACCCGTATCA
CGTGGAGGGGTGCGGCTTGCTTGAGGATGCCATGGCAAATATAGCTACCC
TTGCAGCTTTGGAACAAGGTGATCAACGCTTGCGAATCGAGAAGCGTCGT
TCTCGCGCACTCAACCTCAGACTCTCCTTGTGGGATTCGATTTTCACGGT
ATGGCCGTGTTACATGTTGTTTTTAGCAAGGCCTGCTCATATCCTCTGGT
GTGATGCCCATTTTGAACCCACATTTCGGAGGATATCAACATTTTTGATG
AGAGTCTACCAAGTCCGGGTATGGTTTGTCTCGTTGATCTTGGAAAGCTG
TGTTCCCGGGGTGGATACATCCAACCAGGCCGTTTGTCGTGCAATGCTTT
TCGTGCACCCCCCGTTCATGAGTTGCCCTCGGGGCACATGGACTACGCTT
GCGTTTGCCGTGTGCCCTCCCGGGGCCGACTGTATTTTGTACTTTTTTCA
AGTAGTCTTGGCTTCTTTGCCCCACCAGGTGCTTTGCCGCACTTGGTTTG
CGCGGTCTTCTACGGTGGAAAGCTCGTGCCCTTCTCTTTCGTTCGCCTCT
CCTATCTTCATGTCCCAAACGCATGCCTCTCGACTCGATCTGATCCGTGT
GCGTATCATAGTCCGTTGCGTGGGGGAATGTGGATTGGATTACTCGGAGG
GCTTTCCTTCGGCTGAACTGCAGGTCCCATGGTTTGAGAAACAGGTCGAG
CTTGCGTGCATGCTGAAGAAGCCCCTGTTCCTTCACGAGCGTGCGGCATT
CGGCGACTTTTCCGAGCTGAAGAAGCCCCTGTTCCTTCACGAGCGTGCGG
CATTCGGCGACTTTTCCGAGGTCTTACGGCGATACGACGCCTTGCATGGT
TTGCCTCCGTGCTTGGTACATTGTTTTACGGGAAACGAAAAGGTCTTACG
GCGATACGACGCCTTGCATGGTTTGCCTCCGTGCTTGGTACATTGTTTTA
CGGGAAACGAAAAGGAGCTGGCTGCTTACATTGATATGGGTTTCTTCATC
AGCGTGGCTGGGGGTATCTGTCGGGAGAAGAGCGGCGCGTCACTAAGAGC
AGCGGAGCTGGCTGCTTACATTGATATGGGTTTCTTCATCAGCGTGGCTG
GGGGTATCTGTCGGGAGAAGAGCGGCGCGTCACTAAGAGCAGCGGTGAAA
CGCGTTCCATTGGACAGGCTCATGGTAGAAACGGACGCTCCCTACCTTGG
CTTCACAGGATGCCGAAAAGGACACAGCAAACCGAAGAAACGGGTGAAAC
GCGTTCCATTGGACAGGCTCATGGTAGAAACGGACGCTCCCTACCTTGGC
TTCACAGGATGCCGAAAAGGACACAGCAAACCGAAGAAACGGACTCCGAA
CTGCCCTTCGGCACTGCCAGCGGTGGTGAGAGTTTTGGCGGAATGTCTTG
GGTTACCGTTTGAAGAAGTCGCACGGGCGACGGGCGAGAATTCACGAGCC
TTTTTCGGGATGGAAGAAATCTAGACTCCGAACTGCCCTTCGGCACTGCC
AGCGGTGGTGAGAGTTTTGGCGGAATGTCTTGGGTTACCGTTTGAAGAAG
TCGCACGGGCGACGGGCGAGAATTCACGAGCCTTTTTCGGGATGGAAGAA
ATCTAG