mRNA_C-linearis_contig1.111.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig1.111.1
Unique NamemRNA_C-linearis_contig1.111.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: D7FJ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ03_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.140e-38
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 2 
Query:   41 MSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEFDNPG 295
            MSFPY CD EV+FPSASLATIAC TLAVDAELQP+KI RTLRV+GSSL+A FEAT+ARTLRVVLSGFYD+ SVV RTFLEFD+ G
Sbjct:    1 MSFPYHCDAEVTFPSASLATIACRTLAVDAELQPNKIIRTLRVEGSSLLAKFEATEARTLRVVLSGFYDMASVVARTFLEFDDGG 85
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BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: K3WQ75_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ75_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 1.050e-19
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 2 
Query:   50 PYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            PY+CD+ ++FP A  A  A  TL VDAELQPDKI RTL V+G++LV  FEAT+ R LR  +S FYD+  +V RT LEF
Sbjct:    6 PYECDISLAFPEAVDAAYALETLRVDAELQPDKITRTLAVEGTNLVVHFEATEIRLLRAAVSSFYDMGLLVARTLLEF 83
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BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: A0A3F2S3U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3U4_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.030e-15
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:   50 PYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            P++CDV ++FP    A     TL VD ELQPDKI RTL +KG+ L   FEAT+ R LR  +S FYD+  +  RT LEF
Sbjct:    7 PFECDVCLTFPEEVDAQYVLQTLEVDEELQPDKIHRTLSIKGAELHVHFEATEIRLLRAAVSSFYDMGLLTARTLLEF 84
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: V9EW72_PHYPR (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=V9EW72_PHYPR)

HSP 1 Score: 79.3 bits (194), Expect = 5.390e-15
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:   50 PYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            P++C++ +SFP    A     TL VD ELQP+KI RTL VKG+ L   FEAT+ R LR  +S FYD++ +  R  LEF
Sbjct:    7 PFECEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 84
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: W2PBF0_PHYPN (Uncharacterized protein n=5 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PBF0_PHYPN)

HSP 1 Score: 80.5 bits (197), Expect = 1.950e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 2 
Query:   17 FEKQTRWGMSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            F  +T    + P++C++ +SFP    A     TL VD ELQP+KI RTL VKG+ L   FEAT+ R LR  +S FYD++ +  R  LEF
Sbjct:   85 FLTRTMDSATHPFECEINLSFPEEVDAQYVLQTLEVDEELQPEKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMSVLTARALLEF 173
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: A0A1Y1IC82_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC82_KLENI)

HSP 1 Score: 75.1 bits (183), Expect = 6.280e-13
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:   53 YQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            + C   V FP+   A I C TL+VDAEL P K+FR +RV G  L+ SF A+D R LR  ++GF D+  +  RT  EF
Sbjct:   47 FTCSWHVDFPTEEAAVIVCKTLSVDAELNPTKVFREIRVAGKQLLVSFAASDDRLLRTAVNGFKDMQKLAIRTLEEF 123
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: A0A6P4D759_ARADU (uncharacterized protein LOC107484329 n=6 Tax=Arachis TaxID=3817 RepID=A0A6P4D759_ARADU)

HSP 1 Score: 73.9 bits (180), Expect = 6.690e-13
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 2 
Query:   38 GMSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            G  +P+ CD+EV F     A I C  LAVD ELQPDK+ R + V    L A FEAT+AR LR   S F D+ ++  +T  EF
Sbjct:   10 GSQWPFSCDLEVDFGHEQHADIVCAALAVDKELQPDKVKRLMTVSHGKLSAHFEATEARFLRASFSAFIDVLTLATKTIEEF 91
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: UPI001CB92FF5 (uncharacterized protein LOC122585191 isoform X2 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB92FF5)

HSP 1 Score: 73.9 bits (180), Expect = 7.630e-13
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:   11 VDFEKQTRWGMSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            +D + Q     S+ + CD+EV + S   A I C+TLAVD ELQPDK+ R + V    L+  FEA +AR LR   S F D+ ++  +T  +F
Sbjct:    1 MDSDAQKATSSSWEFSCDLEVDYKSDEKAHIVCSTLAVDKELQPDKVKRLMSVSDGKLLVHFEAVEARFLRASYSAFVDVLTLATKTIEQF 91
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: UPI00053C3B72 (uncharacterized protein LOC104803913 isoform X2 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3B72)

HSP 1 Score: 72.0 bits (175), Expect = 3.250e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:   26 QTRWGMSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            QT+W  S    CD++V+F S   A IA   LAVD ELQPDK+ R + V  S L   FEA +AR LR   S F D+ ++  RT  EF
Sbjct:    8 QTQWDFS----CDLDVNFESEEHALIAYTALAVDKELQPDKVRRLISVSKSKLSVHFEAAEARFLRASFSAFVDVLTLAARTIQEF 89
[Close]
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Match: G4YMJ9_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G4YMJ9_PHYSP)

HSP 1 Score: 71.2 bits (173), Expect = 3.550e-12
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 2 
Query:   65 VEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVASFEATDARTLRVVLSGFYDLTSVVGRTFLEF 283
            + ++FP    A     TL VD ELQPDKI RTL VKG+ L   FEAT+ R LR  +S FYD+  +  RT LEF
Sbjct:    1 ISLTFPEEVDAQYVLQTLEVDDELQPDKIHRTLTVKGAELHVHFEATEIRLLRAAVSSFYDMGVLAARTLLEF 73
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig1.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ03_ECTSI2.140e-3882.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WQ75_GLOUD1.050e-1957.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2S3U4_9STRA2.030e-1551.28Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
V9EW72_PHYPR5.390e-1548.72Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
W2PBF0_PHYPN1.950e-1444.94Uncharacterized protein n=5 Tax=Phytophthora paras... [more]
A0A1Y1IC82_KLENI6.280e-1346.75Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A6P4D759_ARADU6.690e-1346.34uncharacterized protein LOC107484329 n=6 Tax=Arach... [more]
UPI001CB92FF57.630e-1340.66uncharacterized protein LOC122585191 isoform X2 n=... [more]
UPI00053C3B723.250e-1246.51uncharacterized protein LOC104803913 isoform X2 n=... [more]
G4YMJ9_PHYSP3.550e-1250.68Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig1contigC-linearis_contig1:1584508..1586149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.5e-32
Seed eggNOG ortholog2880.D7FJ03
KEGG koko:K15902
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transcription factor Pcc1
EggNOG OGs2CYNW@1,2S5DA@2759
Ec32 ortholog descriptionCTAG/Pcc1 family
Ec32 orthologEc-07_004940.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons3
Model size1044
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig1.111.1prot_C-linearis_contig1.111.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig1 1584548..1585412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927277.5191095-UTR-C-linearis_contig1:1584507..15845471622927277.5191095-UTR-C-linearis_contig1:1584507..1584547Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1584508..1584547 +
1690879600.1702747-UTR-C-linearis_contig1:1584507..15845471690879600.1702747-UTR-C-linearis_contig1:1584507..1584547Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1584508..1584547 +
1622927277.5631227-UTR-C-linearis_contig1:1585412..15861491622927277.5631227-UTR-C-linearis_contig1:1585412..1586149Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1585413..1586149 +
1690879600.2064607-UTR-C-linearis_contig1:1585412..15861491690879600.2064607-UTR-C-linearis_contig1:1585412..1586149Chordaria linearis ClinC8C monoicousUTRC-linearis_contig1 1585413..1586149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927277.5294502-CDS-C-linearis_contig1:1584547..15845671622927277.5294502-CDS-C-linearis_contig1:1584547..1584567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1584548..1584567 +
1690879600.1812913-CDS-C-linearis_contig1:1584547..15845671690879600.1812913-CDS-C-linearis_contig1:1584547..1584567Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1584548..1584567 +
1622927277.5393772-CDS-C-linearis_contig1:1584795..15849241622927277.5393772-CDS-C-linearis_contig1:1584795..1584924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1584796..1584924 +
1690879600.1896071-CDS-C-linearis_contig1:1584795..15849241690879600.1896071-CDS-C-linearis_contig1:1584795..1584924Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1584796..1584924 +
1622927277.5512552-CDS-C-linearis_contig1:1585294..15854121622927277.5512552-CDS-C-linearis_contig1:1585294..1585412Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1585295..1585412 +
1690879600.1980474-CDS-C-linearis_contig1:1585294..15854121690879600.1980474-CDS-C-linearis_contig1:1585294..1585412Chordaria linearis ClinC8C monoicousCDSC-linearis_contig1 1585295..1585412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig1.111.1

>prot_C-linearis_contig1.111.1 ID=prot_C-linearis_contig1.111.1|Name=mRNA_C-linearis_contig1.111.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MSFPYQCDVEVSFPSASLATIACNTLAVDAELQPDKIFRTLRVKGSSLVA
SFEATDARTLRVVLSGFYDLTSVVGRTFLEFDNPGQDR*
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mRNA from alignment at C-linearis_contig1:1584508..1586149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig1.111.1 ID=mRNA_C-linearis_contig1.111.1|Name=mRNA_C-linearis_contig1.111.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1642bp|location=Sequence derived from alignment at C-linearis_contig1:1584508..1586149+ (Chordaria linearis ClinC8C monoicous)
TTATTGATCGGTGGATTTCGAGAAACAAACACGCTGGGGCATGAGCTTTC
CGTATCAGTGGTGAGTATAACGAGCTGCTGCTGTCTGTCGGCTCCCCTAG
CTCCTCTTTGTAAAAATTGTATTTTCGGTACGTTGCACCTGTTACTGCGG
TCCTTAGACAGGTGGTGCCTCTGCCGCGTGAGCACCGTTGAATCTCCTAG
CTTTTGTGCAGTATGATCTCTCCCTAAAACACCGCAGCTGCTGTTGTTCA
CACCCTTCCTTCCATACCCGCCCCCCGAACGTTCACAGCGATGTCGAGGT
TTCCTTTCCATCAGCATCGCTAGCGACAATAGCATGCAACACTTTGGCGG
TGGACGCGGAGTTGCAACCGGACAAAATTTTTCGAACCCTTCGAGTGAAA
GGATCCTCACTAGTGGCGTGAGTGCATCTGTATCATTGATCCTTTCACGG
CTTTCGGTACACCCGGAAGGAACTCCCATATTGGTGCCTAGATAGCTCGG
CTACGTGCCTGCCGAGTATGCGACTGTACTACTGTGTGTTGTGCCGTATG
TCTCATAGCGACCACGATAGATGACACTCCATGTACGGTTTGGGGGCCAC
GCTGGCGGTAACAGCAACGGCGCAAGTAACCCATAATGTTGTCACCGCTG
TTACAATGGCCCTTCCCTACGTAGTCCGCCACTGAAAAGGTTGACACCTG
TTTTTCCCAGCCTACAACGTCACAACACTCAACGAATCGCGGCTTGTTTC
AGCCCCCTTTGTTAATTTCGTGCGTGCTTCGCCGCAGGAGTTTCGAGGCG
ACGGACGCTCGCACCCTCCGCGTCGTTCTTTCTGGGTTTTACGACTTGAC
TTCGGTCGTGGGGAGAACTTTTTTGGAGTTTGATAACCCTGGTCAAGATC
GATGATATTGTGATCTTTCACCGCGGGCCAAAACCTCGTCCTGCCAGACC
AAGCGCCCTCCGAGGAACAAAGCGTCCCGATGGAAACCTGGGCCGTTTAA
CCTGAGGGTTGGCGTACATATTTTTCTTGGTGTCGCATATACGTTGCGTC
GGAATTGCGGGCAGTTGGTGCCTTGTGATTGTTCAGAAGAGCACAGCAGA
CGGGTGCTCCGCTTGGCACAATTTTCCGTAGAGAGAGCGGCAACAATTTT
CTGGGCAACACAGGCTCAAGACCAACCAGGGGCGCTAAGCGTGCTGGGAG
CTGCCCATTCAAGAACAACGACGCGTTGTACCACCAGTAGCGTACGTTGT
GCCGGCCACCGGGCGTTTCCATTTTCAACAGGGGGATCATGTAGATGCGT
CTTGTAGACGCGTCGGGGAACGATGGAGTACATTTGTTCGTGCATCGCTT
CTGTCTAGAGGGGCCTTCTAAAAAGCCCGCTCCTCGGTCGAGTACAGTCA
AACTTCGTTGTGCAGCTGAACTAAACTGAGCGTTAGTGACTGGCACGTGA
TAAAATATGCTTTCGTGCGTCTGTTTCTACTGTACCGCGAAAGAGATGAA
TGGGAGATAGTGGCACTGCTCCTGTACGACATGCGTCACATCTGCAGGGG
TATTTGCGAAGCCCGGCGCATGTACAACCTGGGTAGGTTATGGTAGGGGC
GATCCCCTTTGTCCTCTTGATCGAACATGAAGTTATTGTCCT
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Coding sequence (CDS) from alignment at C-linearis_contig1:1584508..1586149+

>mRNA_C-linearis_contig1.111.1 ID=mRNA_C-linearis_contig1.111.1|Name=mRNA_C-linearis_contig1.111.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig1:1584508..1586149+ (Chordaria linearis ClinC8C monoicous)
ATGAGCTTTCCGTATCAGTGATGAGCTTTCCGTATCAGTGCGATGTCGAG
GTTTCCTTTCCATCAGCATCGCTAGCGACAATAGCATGCAACACTTTGGC
GGTGGACGCGGAGTTGCAACCGGACAAAATTTTTCGAACCCTTCGAGTGA
AAGGATCCTCACTAGTGGCCGATGTCGAGGTTTCCTTTCCATCAGCATCG
CTAGCGACAATAGCATGCAACACTTTGGCGGTGGACGCGGAGTTGCAACC
GGACAAAATTTTTCGAACCCTTCGAGTGAAAGGATCCTCACTAGTGGCGA
GTTTCGAGGCGACGGACGCTCGCACCCTCCGCGTCGTTCTTTCTGGGTTT
TACGACTTGACTTCGGTCGTGGGGAGAACTTTTTTGGAGTTTGATAACCC
TGGTCAAGATCGATGAGAGTTTCGAGGCGACGGACGCTCGCACCCTCCGC
GTCGTTCTTTCTGGGTTTTACGACTTGACTTCGGTCGTGGGGAGAACTTT
TTTGGAGTTTGATAACCCTGGTCAAGATCGATGA
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