prot_C-linearis_contig99.17185.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17185.1
Unique Nameprot_C-linearis_contig99.17185.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length501
Homology
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 507 bits (1306), Expect = 6.350e-174
Identity = 330/521 (63.34%), Postives = 348/521 (66.79%), Query Frame = 0
Query:    1 MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQLASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEINEVMKLFEEDMAGLQRDISSLQRHADGKTRGSPPINSQRQMHCAFIVTTLRKSAQEHTKAFRDALLLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGGASGPRRRGRPXXXXXXXXXXXXXXXPLDGDDEDNKGHKTSGRVAGMGLATSTAAAVVSSLPFPSGRPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCWPQKTG-PPPWP------GXXXXXXXXXXXSGYSNGAAGA------PPGVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--------APPGVPLHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQVQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 500
            MTMTDRT+EF GAV+ FRPTVT V +S EAA  RAQ+DLGYRKTSEFLQLA+SVAVGFEGTS+LIGRLKKLVGRKGFSNNPAAEI++VMKLFE DMAGLQ+DISSLQR+ADG TRGSPP NSQRQMHCAFIVTTLR+SAQEHTKAFRDAL+LRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFG+   SG       XXXXX      XXXX       DNKGHK   R  G            S LPFPSG  G                            S WPQK+  P PW       G            GY   A GA      P     XXXX                             GG        APPG P    E  R    ATGLRKRPGREDG D +EE+RRAAWQVQVQEDSK RVDESHKVEKMIG+LG MFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQI SGNRGIIIKVFIMLI+ IWVFLGLMR
Sbjct:    1 MTMTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDISSLQRYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGS---SGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHKHGPRKGGK---------AASVLPFPSGNGGTRAGGGTGG-------------------SSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYD--AVGAMPRATEPAAXXXXXXXRTDSNGGFRAGPHTAPTFGSANGYVPPAAGGGSGRAHAAAPPGFPPLRTEASRGGGRATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.110e-24
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 0
Query:  424 MIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 495
            MIGELG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ +SGNRGII+KV I+L  F+WVF
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.260e-15
Identity = 44/96 (45.83%), Postives = 64/96 (66.67%), Query Frame = 0
Query:  405 VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR 500
             ++Q  SK RV+E+  +E  I E   MFS+ +TMVA Q E+V  I+DD+E A      G   L +YY I+SGNRG+IIK+FI L++FI++F+ L +
Sbjct:   10 AELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 80.1 bits (196), Expect = 1.520e-14
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0
Query:  408 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 495
            Q D+ +R+ E+  VEK I ELGQ FSR + +VAAQ EVVM I+DD+EAA    ++G A +  Y +I+ GNR +I KVF +L++FI VF
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVF 112          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 5.280e-14
Identity = 41/89 (46.07%), Postives = 62/89 (69.66%), Query Frame = 0
Query:  407 VQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 495
            +++ S+ R+D +H +EK IG+LG++FSRFS++VA Q EVV  ++DDVE A    E G A L K  +++ GNR + +KVF +LI  I +F
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLF 90          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.870e-12
Identity = 50/131 (38.17%), Postives = 85/131 (64.89%), Query Frame = 0
Query:  367 LHPPEPPRASSGATGLRKRPGREDGCDGDEEARRAAWQ-VQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 496
            LHP +P +    A G+R+RP   +G  G   A++   Q +     +++R++++  VE MIGE+G M+SR + ++A QEE++  IEDD+  AH+  E G   L KY+  +S NR +I+K+F++L++FI++FL
Sbjct:  197 LHPVQP-QGPDAAAGMRRRPFM-NGATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFL 325          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.130e-12
Identity = 38/80 (47.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query:  413 ARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFI 492
            +R +    V+K IGEL QMFS+ + +V AQEE++  I+ D+++     +EGQ HL KY+Q +S NRG+IIKVF++LI F+
Sbjct:  216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFV 295          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-11
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 0
Query:  408 QEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVF 495
            Q D+ +R+ E+  VEK I ELGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G   +  Y +I+ GNR +I KVF +L++FI VF
Sbjct:  278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVF 365          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A6G0WSE7_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WSE7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.880e-11
Identity = 37/86 (43.02%), Postives = 63/86 (73.26%), Query Frame = 0
Query:  411 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 496
            ++AR++++  +E  I E+G M+SR + ++A+QEE++  IEDD+  AHA  E G   L KY+  +S NR +I+K+F++L+LFI++FL
Sbjct:  224 AQARLNDAQHMEATISEIGGMYSRMTGLLASQEEMLGRIEDDMTTAHANVESGYEELMKYFSTVSSNRSLILKIFLILLLFIYLFL 309          
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Match: A0A1V9YVH0_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVH0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.970e-10
Identity = 37/86 (43.02%), Postives = 62/86 (72.09%), Query Frame = 0
Query:  411 SKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFL 496
            ++AR++++ ++E  I E+G M SR S+++A+Q EV+  I+DD+  A    E G   L KY+  MSGNR +I+K+FI+L++FI++FL
Sbjct:  223 AQARLNDALQMESTIAEIGSMHSRMSSLIASQGEVLERIDDDMTLAQDNVEAGHNELLKYFATMSGNRSLILKIFIILLVFIYLFL 308          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE6.350e-17463.34t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835ZFW2_9STRA3.110e-2470.83t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2XXW7_9STRA1.260e-1545.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
I2CQ48_NANGC1.520e-1451.14t-SNARE coiled-coil homology domain-containing pro... [more]
F0Y6L6_AURAN5.280e-1446.07t-SNARE coiled-coil homology domain-containing pro... [more]
A0A485LIS1_9STRA1.870e-1238.17Aste57867_21905 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S3H3X9_9STRA2.130e-1247.50Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CWV4_9STRA1.300e-1148.86t-SNARE coiled-coil homology domain-containing pro... [more]
A0A6G0WSE7_9STRA1.880e-1143.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A1V9YVH0_9STRA1.970e-1043.02t-SNARE coiled-coil homology domain-containing pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 82..109
NoneNo IPR availableGENE3D1.20.5.110coord: 399..499
e-value: 4.7E-14
score: 53.8
NoneNo IPR availablePANTHERPTHR19957:SF3SYNTAXIN-5coord: 391..496
coord: 3..183
NoneNo IPR availablePANTHERPTHR19957SYNTAXINcoord: 3..183
NoneNo IPR availablePANTHERPTHR19957SYNTAXINcoord: 391..496
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 480..499
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..479
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 500..500
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 405..471
NoneNo IPR availableTMHMMTMhelixcoord: 479..498
IPR000727Target SNARE coiled-coil homology domainSMARTSM00397tSNARE_6coord: 403..470
e-value: 8.0E-8
score: 42.0
IPR000727Target SNARE coiled-coil homology domainPFAMPF05739SNAREcoord: 445..496
e-value: 8.3E-7
score: 28.9
IPR000727Target SNARE coiled-coil homology domainPROSITEPS50192T_SNAREcoord: 408..470
score: 10.95
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 45..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:416692..421011 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17185.1mRNA_C-linearis_contig99.17185.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 415695..421134 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17185.1 ID=prot_C-linearis_contig99.17185.1|Name=mRNA_C-linearis_contig99.17185.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=501bp
MTMTDRTEEFRGAVNVFRPTVTVVKDSSEAAATRAQSDLGYRKTSEFLQL
ASSVAVGFEGTSKLIGRLKKLVGRKGFSNNPAAEINEVMKLFEEDMAGLQ
RDISSLQRHADGKTRGSPPINSQRQMHCAFIVTTLRKSAQEHTKAFRDAL
LLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGNGGASGPRRRGRPAA
SPPPPPPAAAAAAPLDGDDEDNKGHKTSGRVAGMGLATSTAAAVVSSLPF
PSGRPGGGGGVRRSGEGVMGGGGGGGGSGGGQGGSCWPQKTGPPPWPGGG
YNGGAGGGGSGYSNGAAGAPPGVLGAGGAEYGRGAGATSAPAHSNGGGFS
GHGRGYGHGGAPPGVPLHPPEPPRASSGATGLRKRPGREDGCDGDEEARR
AAWQVQVQEDSKARVDESHKVEKMIGELGQMFSRFSTMVAAQEEVVMHIE
DDVEAAHAFAEEGQAHLAKYYQIMSGNRGIIIKVFIMLILFIWVFLGLMR
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
IPR010989SNARE