prot_C-linearis_contig99.17184.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig99.17184.1
Unique Nameprot_C-linearis_contig99.17184.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length587
Homology
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 5.700e-52
Identity = 206/586 (35.15%), Postives = 232/586 (39.59%), Query Frame = 0
Query:    8 DAIGWRCARCGHAVPIDNREVHEARCGRAPSPXXXXXXTLAPPQXXXXXXXTPASPSLFDPDEETPTHNVFTPGSPPRDAQTPQQPQXXXXXXXXXXXXXRPWREVNLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERESETTWACNACTYLNDFAVSRCAMCGTRMSPQQRPPDSTYRDTLISDDPDPPSRSGGRCRRQAGAAGDFEAAAEEARCRLLAEASARRGNGTRGGGXXXXXXXXXXXGRDDDGLIDTGGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGITDDTGARGGNNTNNDRTEGGRGGRDDEFGAWLRQRRXXXXXXLSLEFVEHSRTGILLGGXXXXXXXXXXELDLDVEESLLLARRMEALNLPDAAAEMRREAMRGTVEGPR----GIVHRRRQPHLHEQEEDGA-----TRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVD 584
            DA  W C RCGH VPIDNREVHEA+C R            +P Q       T + PS FDPD +  + NVFTP  PP                          RE   P            XXXXXXXXXXX                                                                  E    TTWAC ACTYLNDF VSRC MCGTRMSPQQRPPD+TYRDTLI          G                                        XXXXXXXXXXX   D GL+D     S                                             LGG++D+ GA                              XXXX   S EFV      +  G              +   ESL+LARR+EAL+LP +AA MRRE              GI+ +  +   H+     A     T PASARAIAALP E LTAG+L+HLK+DGRQCCICLEDF  G++  RL CLHLYHTVCI+NWLQTSGTCPQCK RVD
Sbjct:    2 DATCWVCQRCGHEVPIDNREVHEAQCRRN-----------SPAQLLSPPPVTGSPPSPFDPDNQPFSRNVFTPAQPPAAEAAA--------------------RESGQPCGFAAAGRGAASXXXXXXXXXXXSTEGEG------------------------------------------------------------ESGDTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIG--------GGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQGLLDGRTTISGAAAGSAIGAIGGALLSAVQPGARASGVMSSMFQGALMGGMAGAALGGLSDEPGA----GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSFEFVRGPTARVRRGRDV-----------VSEMESLMLARRLEALSLPASAAAMRREGGXXXXXXXSSIYAGILRQLAEAQNHDAAGGDAXXXXGTSPASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRVD 473          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.700e-39
Identity = 174/377 (46.15%), Postives = 195/377 (51.72%), Query Frame = 0
Query:  208 ESETTWACNACTYLNDFAVSRCAMCGTRMSPQQRPPDSTYRDTLISDDPDPPSRSGGRCRRQAGAAGDFEAAAEEARCRLLAEASARRGNGTRGGGXXXXXXXXXXXGRDDDGLIDTGGAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGITDDTGARGGNNTNNDRTEGGRGGRDDEFGAWLRQRRXXXXXXLSLEFVEHSRTGILLGGXXXXXXXXXXELDLDVEESLLLARRMEALNLPDAAAEMRREAMRGTVEGPRGIVHRRRQPHLHEQEEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVD 584
            E+ TTWAC ACTYLNDF VSRC MCGTRMSPQQRPPD+TYRDTLI                                                   XXXXXXXXXXX  DD GL+D     S        XXXXXXXXXXX  XXXXXXXXXXXXXXXXXXXXXX  LGG++++ GA G +                        RR       S+EFV      +  G              +   ESL+LA R++A  L   A     +A  G                           PASARAIAALP ETLTAGSL+HLK+DGRQCCICLE+F  G+   RL CLHLYH+VCI+NWLQTSGTCPQCK RVD
Sbjct:  274 ETTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDDQGLLDGRSTISGAAAGSAIXXXXXXXXXXXQPXXXXXXXXXXXXXXXXXXXXXXAALGGLSNEPGAGGDSXXXXXXXX-----XXXXXXXXXXFRRQWRRQVSSVEFVRGPTARVRRGRDA-----------VSEVESLMLA-RLDARILRRLAEAHNHDAAGGXXXXXXXAS------------------PASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRVD 606          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A835Z4Y2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.040e-13
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0
Query:  505 DGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRV 583
            +G     S  A+ AL +  L+A  ++ L E  R CCICLE+F  G  VK L+CLH +HT CI   LQ    CP CKHRV
Sbjct:   71 EGRRSSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI00053C58A5 (E3 ubiquitin-protein ligase RING1-like isoform X1 n=4 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C58A5)

HSP 1 Score: 82.4 bits (202), Expect = 3.140e-13
Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 0
Query:  510 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDL 585
            PA   AI A+P   +T+    HLK+DG QC +CLE+F  G E K L C H+YH  CI  WL+   +CP C+H V L
Sbjct:  219 PAPESAIEAIPTVKITS---DHLKKDGSQCSVCLEEFQVGGEAKELPCTHIYHNDCIVPWLRLHNSCPVCRHEVPL 291          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A7S1MR62_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MR62_ALECA)

HSP 1 Score: 77.4 bits (189), Expect = 4.680e-13
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 0
Query:  503 EEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 586
            E+  A+ PA A  I ALP   L      ++ E  + C ICLE+FG GD+VK L CLHLYH  CI+ WL T  +CP CK  +  A
Sbjct:   73 EQSEASNPAQAADIDALPTRKLAGAD--NVGEQSK-CLICLEEFGEGDDVKTLPCLHLYHQRCIEQWLGTDNSCPVCKTPIGQA 153          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A1Q9F205_SYMMI (E3 ubiquitin-protein ligase RNF12-A n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F205_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 5.640e-12
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 0
Query:  511 ASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRV 583
            A  R I ALP      G  +    DG +C IC+EDF  GDE++ L C HL+H+ CI  WLQ +  CP C+H+V
Sbjct:  217 ADGRTIQALPTRKFAGGEAA--AADGTRCEICMEDFAEGDELRTLPCFHLFHSKCIDQWLQVNSICPICRHKV 287          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A7S1MQQ6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MQQ6_ALECA)

HSP 1 Score: 73.6 bits (179), Expect = 1.020e-11
Identity = 37/84 (44.05%), Postives = 46/84 (54.76%), Query Frame = 0
Query:  503 EEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 586
            E+  A  PA A  I ALP   L      +L E  + C ICLE+FG GD+V  L CLH YH  C++ WL T  +CP CK  +  A
Sbjct:   73 EQSDAGNPAHAADINALPNRKLAGAE--NLGEQSK-CLICLEEFGDGDDVTTLPCLHFYHQRCVEQWLGTDNSCPVCKTPIGQA 153          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: A0A6A2ZT57_HIBSY (Putative Ribosomal protein L34e superfamily protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZT57_HIBSY)

HSP 1 Score: 73.2 bits (178), Expect = 1.640e-11
Identity = 31/71 (43.66%), Postives = 44/71 (61.97%), Query Frame = 0
Query:  510 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCK 580
            PAS  +I A+P+          +KE GR C ICLE+FG  +E + + C H++H+ CIQ WLQ  G+CP C+
Sbjct:   36 PASKASIEAMPK--------IKVKESGRDCSICLEEFGVDEEAREMPCKHVFHSGCIQKWLQIHGSCPICR 98          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI0018F4222A (RING finger protein 11-like isoform X2 n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F4222A)

HSP 1 Score: 70.5 bits (171), Expect = 8.050e-11
Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 0
Query:  516 IAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA 586
            I  LP+ T   G      +  ++C IC+ DF +GD+++ L C+H+YH  CI  WL  S TCP C   VD A
Sbjct:   62 IQHLPKGTFDFGGKDSQNKKIKECVICMMDFDSGDQIRFLPCMHIYHVDCIDEWLMRSFTCPSCMEPVDAA 132          
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Match: UPI00053C47F1 (probable E3 ubiquitin-protein ligase RHC1A isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C47F1)

HSP 1 Score: 74.7 bits (182), Expect = 8.340e-11
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0
Query:  510 PASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGDEVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDL 585
            P    AI  +P   +T+    HLK DG QC +C+E+F  G E K L C H+YH  CI  WL+   +CP C+H + +
Sbjct:  212 PVPESAIDTIPTVKITS---EHLKNDGTQCTVCMEEFQVGGEAKELPCKHIYHNDCIVPWLRLHNSCPICRHELPV 284          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR18_ECTSI5.700e-5235.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L176_9PHAE6.700e-3946.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z4Y2_9STRA2.040e-1346.84RING-type domain-containing protein n=1 Tax=Tribon... [more]
UPI00053C58A53.140e-1347.37E3 ubiquitin-protein ligase RING1-like isoform X1 ... [more]
A0A7S1MR62_ALECA4.680e-1346.43Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A1Q9F205_SYMMI5.640e-1245.21E3 ubiquitin-protein ligase RNF12-A n=1 Tax=Symbio... [more]
A0A7S1MQQ6_ALECA1.020e-1144.05Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A6A2ZT57_HIBSY1.640e-1143.66Putative Ribosomal protein L34e superfamily protei... [more]
UPI0018F4222A8.050e-1140.85RING finger protein 11-like isoform X2 n=1 Tax=Scy... [more]
UPI00053C47F18.340e-1140.79probable E3 ubiquitin-protein ligase RHC1A isoform... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 117..151
NoneNo IPR availableGENE3D2.20.28.140coord: 206..254
e-value: 5.5E-7
score: 31.2
NoneNo IPR availablePANTHERPTHR45977FAMILY NOT NAMEDcoord: 523..584
NoneNo IPR availablePANTHERPTHR45977:SF4TARGET OF ERK KINASE MPK-1coord: 523..584
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 532..584
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 211..235
e-value: 0.0059
score: 25.8
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 213..232
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 207..238
score: 8.264
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 539..579
e-value: 4.5E-7
score: 39.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 538..580
e-value: 6.5E-12
score: 45.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 539..580
score: 11.516
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 496..584
e-value: 2.4E-19
score: 70.8
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 209..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:412091..414462 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17184.1mRNA_C-linearis_contig99.17184.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig99 412058..415451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig99.17184.1 ID=prot_C-linearis_contig99.17184.1|Name=mRNA_C-linearis_contig99.17184.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=587bp
MDSINGPDAIGWRCARCGHAVPIDNREVHEARCGRAPSPTPTPTPTLAPP
QPPPTLLPTPASPSLFDPDEETPTHNVFTPGSPPRDAQTPQQPQPQPQPT
SAAAALSRPWREVNLPAAAAAAAVATAREQREQEQRRTRDLRRRLQVLQE
RSGQGDRPFTSSSSSSSDSGFVFVGPDAGAAGAGAGERAGAGAAAAAAGA
GAGGEERESETTWACNACTYLNDFAVSRCAMCGTRMSPQQRPPDSTYRDT
LISDDPDPPSRSGGRCRRQAGAAGDFEAAAEEARCRLLAEASARRGNGTR
GGGSGGRGGQGNSGGRDDDGLIDTGGAASGAAAGSLLGAISAGMLSAIQP
GARPGRVLASALQGALMGGAAGAALGGITDDTGARGGNNTNNDRTEGGRG
GRDDEFGAWLRQRRRQRQRQLSLEFVEHSRTGILLGGGRGGGGGGGGELD
LDVEESLLLARRMEALNLPDAAAEMRREAMRGTVEGPRGIVHRRRQPHLH
EQEEDGATRPASARAIAALPEETLTAGSLSHLKEDGRQCCICLEDFGTGD
EVKRLQCLHLYHTVCIQNWLQTSGTCPQCKHRVDLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR036443Znf_RanBP2_sf