mRNA_C-linearis_contig99.17170.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17170.1
Unique NamemRNA_C-linearis_contig99.17170.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5K266_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K266_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 4.910e-49
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 3
Query:   33 MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
            MLR FMEE GITE FPG AVLS TPLVLC+RAGCLL LYDKR++ LSKER+ARKLK +PAAR +WTGSPEPVRQL+RR LDR CTSDAAVEVLL AV ISGRVL  C GGP
Sbjct:    1 MLRAFMEETGITENFPGLAVLSITPLVLCQRAGCLLNLYDKRMRVLSKERIARKLKLVPAARTKWTGSPEPVRQLQRRLLDRCCTSDAAVEVLLRAVDISGRVLDMC-GGP 110          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KHQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.670e-32
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
            +CGGP DAVAR L  TCE+VTNDVS RLS  +++APDT LDAS +TF A+FL DG QQ+P+ VV SPPYKGA+KFVKAAL VAK GVALK
Sbjct:  142 MCGGPDDAVARKLRDTCEVVTNDVSSRLSSDARRAPDTSLDASKSTFAAEFLADGFQQQPERVVASPPYKGAVKFVKAALCVAKHGVALK 231          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5JXU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU2_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.360e-31
Identity = 67/123 (54.47%), Postives = 81/123 (65.85%), Query Frame = 3
Query:    3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
            YRQLRPRT SMLR F+  AG+ E FPG  P  +    LV CKRA C+LK  DK + +   +R  +K KR  +  A WT +PEP   ++RRHLDRYCTS  AVE LL+AV +SGRVL  C GGP
Sbjct:   25 YRQLRPRTMSMLRAFVRNAGLAEKFPGVMPLGVGIDSLVRCKRAECVLKQNDKHMSDFCHDRARKKQKRNRSEAATWTSAPEPAVHVKRRHLDRYCTSIVAVEALLDAVNVSGRVLDMC-GGP 146          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: D7FJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU4_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 5.550e-31
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
            +CGGPGDA+A  LGATC++VTND+S RLSPG    PDT+LDAS  +F  DFL     QRPDWV+TSPPYKGAL++VK+ALS+A KGVALK
Sbjct:  106 MCGGPGDAIATRLGATCKVVTNDISTRLSPGGLP-PDTNLDASLASFAVDFLLAKPGQRPDWVLTSPPYKGALEYVKSALSLAAKGVALK 194          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 5.850e-28
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 3
Query:    3 YRQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
            +R  R RT  ++R+F++EAGI + FPG  ++ + T L+ LCKRAGCLL+LY K+    S+ERVARK K++P     W+ +PEPV   +RR LDRYCT   AVEVL NAV I+G VL  C GGP
Sbjct:   35 FRHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMC-GGP 156          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KJ32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ32_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 8.390e-28
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 3
Query:    6 RQLRPRTASMLRTFMEEAGITETFPG-PAVLSNTPLV-LCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVG 359
            R  R RT  ++R+F++EAGI + FPG  ++ + T L+ LCKRAGCLL+LY K+    S+ERVARK K++P     W+ +PEPV   +RR LDRYCT   AVEVL NAV I+G VL  C G
Sbjct:   91 RHTRARTGELVRSFVDEAGIADKFPGFQSIAAGTNLLALCKRAGCLLELYQKQEWARSRERVARKAKQMPRHSRMWSAAPEPVTHDKRRRLDRYCTLPEAVEVLQNAVAIAGCVLDMCGG 210          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KTR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTR5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.210e-27
Identity = 65/136 (47.79%), Postives = 84/136 (61.76%), Query Frame = 3
Query:    3 YRQLRPRTASMLRTFMEEAGITETFPGPAVLSNTP--LVLCKRAGCLLKLYDKRVKELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP----AMRWHGYLE 392
            +RQ R RT  +LR+F++EAG+ + FPG    +  P    LCKR+GCLL+LY K     S+ERVARK K+ P     W+ +PEPV   +RR  DRYCTS  AV+ L +AV I+G VL  C GGP    AM + G  E
Sbjct:   42 FRQTRARTGELLRSFVDEAGLADRFPGFQSGAAGPNLFALCKRSGCLLELYKKHEWARSRERVARKAKQTPRHSRTWSAAPEPVTHHKRRRFDRYCTSPEAVDALRDAVAITGCVLDMC-GGPDDAVAMGFGGTCE 176          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5K049_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K049_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.250e-24
Identity = 56/90 (62.22%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  350 LCGGPGDAVARLLGATCELVTNDVSGRLSPGSKQAPDTHLDASATTFCADFLEDGVQQRPDWVVTSPPYKGALKFVKAALSVAKKGVALK 619
            +CGG  DAVA  L  TC+++TNDV  RLSP       T+LDAS+ +F  DFL     Q+PDW+VTSPPYKGAL FVKAAL+VAKKGVALK
Sbjct:   94 MCGGTDDAVAIRLRDTCQVLTNDVGPRLSPA------TNLDASSASFTDDFLAAHHGQQPDWIVTSPPYKGALAFVKAALTVAKKGVALK 177          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KNW7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 7.450e-23
Identity = 61/127 (48.03%), Postives = 75/127 (59.06%), Query Frame = 3
Query:    3 YRQLRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
            +R +R RT+S +R F++E GI   F       L    LVLC+R  CLL+LY K      K+ SK+R ARK  R P     W G+PEP   L+RR LDRYCTS  AV+ LL AV I+G VL  C GGP
Sbjct:   25 FRHMRARTSSQVRDFVDEVGIANQFTALNEGNLGVITLVLCRRPACLLQLYKKHEQRASKDRSKDRRARKAARTPRHAKGWVGAPEPQTHLKRRWLDRYCTSPEAVDALLGAVGITGCVLDMC-GGP 150          
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.610e-22
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   12 LRPRTASMLRTFMEEAGITETFPG--PAVLSNTPLVLCKRAGCLLKLYDKRV----KELSKERVARKLKRLPA-ARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPISGRVLVFCVGGP 365
            +RPRT+S +R F++E GI   FP      L  + L LCKR+GCLL+LY K      KE SK+R ARK  + P  A   WT  PEP   L+RR LDRYCTS  AVE LL AV I+G +L  C GGP
Sbjct:    1 MRPRTSSQVRAFVDEIGIANQFPALDEGGLGASTLTLCKRSGCLLQLYKKHEQRMSKERSKDRRARKAAQTPRHATGMWT-VPEPQTHLKRRWLDRYCTSPEAVEALLGAVSITGCILDVC-GGP 123          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K266_9PHAE4.910e-4979.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ4_9PHAE7.670e-3271.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU2_9PHAE1.360e-3154.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJU4_ECTSI5.550e-3167.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUK3_9PHAE5.850e-2852.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ32_9PHAE8.390e-2852.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTR5_9PHAE9.210e-2747.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K049_9PHAE6.250e-2462.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNW7_9PHAE7.450e-2348.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD58_9PHAE2.610e-2251.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:334579..335437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size620
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17170.1prot_C-linearis_contig99.17170.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 335028..335405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930849.789531-UTR-C-linearis_contig99:334578..3347691622930849.789531-UTR-C-linearis_contig99:334578..334769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 334579..334769 -
1690881281.5248246-UTR-C-linearis_contig99:334578..3347691690881281.5248246-UTR-C-linearis_contig99:334578..334769Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 334579..334769 -
1622930849.8067458-UTR-C-linearis_contig99:335008..3350271622930849.8067458-UTR-C-linearis_contig99:335008..335027Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 335009..335027 -
1690881281.533663-UTR-C-linearis_contig99:335008..3350271690881281.533663-UTR-C-linearis_contig99:335008..335027Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 335009..335027 -
1622930849.8519847-UTR-C-linearis_contig99:335405..3354371622930849.8519847-UTR-C-linearis_contig99:335405..335437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 335406..335437 -
1690881281.5615244-UTR-C-linearis_contig99:335405..3354371690881281.5615244-UTR-C-linearis_contig99:335405..335437Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 335406..335437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930849.836582-CDS-C-linearis_contig99:335027..3354051622930849.836582-CDS-C-linearis_contig99:335027..335405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 335028..335405 -
1690881281.5489357-CDS-C-linearis_contig99:335027..3354051690881281.5489357-CDS-C-linearis_contig99:335027..335405Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 335028..335405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17170.1

>prot_C-linearis_contig99.17170.1 ID=prot_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=126bp
MLRTFMEEAGITETFPGPAVLSNTPLVLCKRAGCLLKLYDKRVKELSKER
VARKLKRLPAARARWTGSPEPVRQLRRRHLDRYCTSDAAVEVLLNAVPIS
GRVLVFCVGGPAMRWHGYLERRVSS*
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mRNA from alignment at C-linearis_contig99:334579..335437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=859bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous)
GGTATCGACAGCTACGACCGCGGACGGCCAGCATGCTGCGGACGTTCATG GAGGAAGCGGGCATCACGGAAACTTTCCCTGGCCCAGCAGTGCTCTCGAA CACTCCCTTGGTACTTTGCAAACGTGCTGGTTGCCTGTTGAAGCTGTACG ACAAGCGCGTGAAAGAACTCAGCAAGGAGCGCGTTGCACGCAAACTGAAA CGTTTGCCTGCGGCCAGAGCAAGGTGGACCGGTTCTCCCGAGCCGGTGCG CCAGCTTCGACGCCGCCATCTGGACCGCTACTGTACCTCCGATGCGGCGG TTGAGGTGCTGCTTAATGCTGTCCCCATCAGCGGGAGAGTATTGGTTTTC TGTGTGGGGGGCCCGGCGATGCGGTGGCACGGCTACTTGGAGCGACGTGT GAGCTCGTAACGAACGACGTCAGCGGCAGGTGATTTATTTGTTGTAGTGG GTAAAGAGTAGTGGCTAGTGGCTCGTGGTTGCGACTGTAGAGAAGGGAGC GTGGAAGTCGTAACGTTACACAGCACCGTTGGGTCTGTATGGCACTGATA TTGCCGACTCCCCTTCTCCCACCCCCTGCCCACTTTGTACATGCCGATAA TGTATCAAGCGCCTTCGTTTCCGTGCCCTCCCCCCCCCCCTTGCACCTCG TTACTCCGGGATTTTCAGGTTGTCCCCCGGCTCTAAGCAGGCACCGGACA CTCACCTAGATGCAAGCGCGACGACATTTTGTGCCGACTTCCTGGAGGAC GGCGTTCAACAGCGCCCTGACTGGGTCGTGACGAGCCCCCCCTACAAGGG AGCTCTGAAGTTTGTCAAGGCGGCGCTGTCGGTAGCGAAAAAAGGCGTGG CGCTAAAGC
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Coding sequence (CDS) from alignment at C-linearis_contig99:334579..335437-

>mRNA_C-linearis_contig99.17170.1 ID=mRNA_C-linearis_contig99.17170.1|Name=mRNA_C-linearis_contig99.17170.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at C-linearis_contig99:334579..335437- (Chordaria linearis ClinC8C monoicous)
ATGCTGCGGACGTTCATGGAGGAAGCGGGCATCACGGAAACTTTCCCTGG
CCCAGCAGTGCTCTCGAACACTCCCTTGGTACTTTGCAAACGTGCTGGTT
GCCTGTTGAAGCTGTACGACAAGCGCGTGAAAGAACTCAGCAAGGAGCGC
GTTGCACGCAAACTGAAACGTTTGCCTGCGGCCAGAGCAAGGTGGACCGG
TTCTCCCGAGCCGGTGCGCCAGCTTCGACGCCGCCATCTGGACCGCTACT
GTACCTCCGATGCGGCGGTTGAGGTGCTGCTTAATGCTGTCCCCATCAGC
GGGAGAGTATTGGTTTTCTGTGTGGGGGGCCCGGCGATGCGGTGGCACGG
CTACTTGGAGCGACGTGTGAGCTCGTAAATGCTGCGGACGTTCATGGAGG
AAGCGGGCATCACGGAAACTTTCCCTGGCCCAGCAGTGCTCTCGAACACT
CCCTTGGTACTTTGCAAACGTGCTGGTTGCCTGTTGAAGCTGTACGACAA
GCGCGTGAAAGAACTCAGCAAGGAGCGCGTTGCACGCAAACTGAAACGTT
TGCCTGCGGCCAGAGCAAGGTGGACCGGTTCTCCCGAGCCGGTGCGCCAG
CTTCGACGCCGCCATCTGGACCGCTACTGTACCTCCGATGCGGCGGTTGA
GGTGCTGCTTAATGCTGTCCCCATCAGCGGGAGAGTATTGGTTTTCTGTG
TGGGGGGCCCGGCGATGCGGTGGCACGGCTACTTGGAGCGACGTGTGAGC
TCGTAA
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