mRNA_C-linearis_contig99.17148.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17148.1
Unique NamemRNA_C-linearis_contig99.17148.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 6.130e-41
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLFQ 243
            LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQL Q
Sbjct:   69 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLSQ 149
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BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.200e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   10 TDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQ 234
            TDG E +P  GV+P +++  P FQRA+R+DA+RA L TKQPYGD LHKFLAL S+ HWET   Q KMEA F +AQ
Sbjct:   27 TDGNEDEPHPGVIPSKDA--PSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQ 99
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BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 7.720e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   10 TDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQ 234
            TDG E +P  GV+P +++  P FQRA+R+DA+RA L TKQPYGD LHKFLAL S+ HWET   Q KMEA F +AQ
Sbjct:   27 TDGNEDEPHPGVIPSKDA--PSFQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQ 99
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BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.010e-15
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 LAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQR----KMEAPFTKAQL 237
            LA TDG+E+ P  GV+   +   P F  A+ DDA+RA+LETKQPY DALHKFLAL S +HW+T E Q     KMEA FT+A+L
Sbjct:  146 LAATDGIESDPHEGVLTGRKGR-PSFHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAEL 227
[Close]
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 8.640e-14
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:   13 DGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAP----FTKAQLFQQLVALL*RDGKRAAQDGT 297
            DG+E+ P  GV+PD      V Q AT +DA+ A+LETKQPYGD LHKFLAL S   W+T   QRKM+A     FT+ +LFQ+    +   G   ++ G 
Sbjct:  137 DGIESDPHEGVLPDRNGAGSV-QYATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGV 234
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KU43_9PHAE6.130e-4198.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6J6_ECTSI7.200e-1761.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWV7_ECTSI7.720e-1761.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5E5_9PHAE3.010e-1556.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLR6_ECTSI8.640e-1446.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:120416..121289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size874
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17148.1prot_C-linearis_contig99.17148.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 120724..120978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.4240618-UTR-C-linearis_contig99:120415..1207231622930846.4240618-UTR-C-linearis_contig99:120415..120723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 120416..120723 +
1690881279.7787468-UTR-C-linearis_contig99:120415..1207231690881279.7787468-UTR-C-linearis_contig99:120415..120723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 120416..120723 +
1622930846.474396-UTR-C-linearis_contig99:120978..1212891622930846.474396-UTR-C-linearis_contig99:120978..121289Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 120979..121289 +
1690881279.8000498-UTR-C-linearis_contig99:120978..1212891690881279.8000498-UTR-C-linearis_contig99:120978..121289Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 120979..121289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930846.445422-CDS-C-linearis_contig99:120723..1209781622930846.445422-CDS-C-linearis_contig99:120723..120978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 120724..120978 +
1690881279.7884705-CDS-C-linearis_contig99:120723..1209781690881279.7884705-CDS-C-linearis_contig99:120723..120978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 120724..120978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17148.1

>prot_C-linearis_contig99.17148.1 ID=prot_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp
MTPEPGRRWTTTAECSRVTAATFGGGTIGGSQNGDSGEEGSRRTVAIGSA
EDERLKAPDVAATTVTESTMLVTLYDGVVLAARG*
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mRNA from alignment at C-linearis_contig99:120416..121289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17148.1 ID=mRNA_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=874bp|location=Sequence derived from alignment at C-linearis_contig99:120416..121289+ (Chordaria linearis ClinC8C monoicous)
CTCGCAGTGACAGACGGCGTCGAGACCAAACCACGCCTTGGTGTCGTGCC
CGACGAGGAGAGCGACGACCCAGTGTTCCAGCGCGCTACCCGTGACGACG
CAGTCCGGGCGCTATTGGAAACAAAGCAACCGTATGGCGACGCTCTTCAC
AAGTTCCTAGCCCTCGTCAGCATGATCCACTGGGAGACGGCCGAGATGCA
GCGCAAGATGGAGGCCCCGTTTACCAAGGCTCAACTCTTCCAGCAACTCG
TCGCTCTTCTTTGACGAGACGGGAAACGCGCTGCCCAAGATGGGACTTAG
AGTGGTGCATGACACCGGAGCCGGGGCGGCGGTGGACTACGACGGCGGAG
TGCAGTCGGGTGACTGCAGCAACTTTCGGTGGAGGGACCATCGGAGGCTC
CCAGAACGGGGATAGCGGCGAGGAGGGGTCGAGACGAACGGTTGCCATTG
GTTCCGCGGAGGACGAGCGGCTGAAAGCCCCCGACGTGGCCGCTACCACC
GTAACCGAGAGTACGATGCTCGTCACCCTGTACGACGGGGTAGTGCTCGC
CGCGCGCGGGTAGGTCAGGAGCTCCTTGTGCGTTTTTGGTGTGCAAAGCT
ATCGCTGACCCTTGGGTGCCGTGGTGTTTTTTTTTTGTAAGTCTCCCTAG
TTCGGCGCACATCCACGCGACAGCAACCGTCTGTACTATAAAACCCCCAA
GCCTCGTCTCAAGTGCCCCGCCGATACTTTTTTTGTTGTCTTTTCCGTCG
GCGCCTTAGCACACCCCTCACCAGGATCGGGCCATGGTTCTACGAGAACG
TGGTCGGAGTGGCATTGGTCGGGCCCAAGAAGAAGCTATCCCTCGTGAAG
ACGAGGGGGGAACTACCTCCGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig99:120416..121289+

>mRNA_C-linearis_contig99.17148.1 ID=mRNA_C-linearis_contig99.17148.1|Name=mRNA_C-linearis_contig99.17148.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig99:120416..121289+ (Chordaria linearis ClinC8C monoicous)
ATGACACCGGAGCCGGGGCGGCGGTGGACTACGACGGCGGAGTGCAGTCG
GGTGACTGCAGCAACTTTCGGTGGAGGGACCATCGGAGGCTCCCAGAACG
GGGATAGCGGCGAGGAGGGGTCGAGACGAACGGTTGCCATTGGTTCCGCG
GAGGACGAGCGGCTGAAAGCCCCCGACGTGGCCGCTACCACCGTAACCGA
GAGTACGATGCTCGTCACCCTGTACGACGGGGTAGTGCTCGCCGCGCGCG
GGTAGATGACACCGGAGCCGGGGCGGCGGTGGACTACGACGGCGGAGTGC
AGTCGGGTGACTGCAGCAACTTTCGGTGGAGGGACCATCGGAGGCTCCCA
GAACGGGGATAGCGGCGAGGAGGGGTCGAGACGAACGGTTGCCATTGGTT
CCGCGGAGGACGAGCGGCTGAAAGCCCCCGACGTGGCCGCTACCACCGTA
ACCGAGAGTACGATGCTCGTCACCCTGTACGACGGGGTAGTGCTCGCCGC
GCGCGGGTAG
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