mRNA_C-linearis_contig99.17149.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig99.17149.1
Unique NamemRNA_C-linearis_contig99.17149.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig99.17149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig99contigC-linearis_contig99:135936..136551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size616
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig99.17149.1prot_C-linearis_contig99.17149.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig99 136230..136547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.980412-UTR-C-linearis_contig99:135935..1362291622930845.980412-UTR-C-linearis_contig99:135935..136229Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 135936..136229 +
1690881279.6208708-UTR-C-linearis_contig99:135935..1362291690881279.6208708-UTR-C-linearis_contig99:135935..136229Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 135936..136229 +
1622930846.0083709-UTR-C-linearis_contig99:136547..1365511622930846.0083709-UTR-C-linearis_contig99:136547..136551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 136548..136551 +
1690881279.6498592-UTR-C-linearis_contig99:136547..1365511690881279.6498592-UTR-C-linearis_contig99:136547..136551Chordaria linearis ClinC8C monoicousUTRC-linearis_contig99 136548..136551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930845.9961874-CDS-C-linearis_contig99:136229..1365471622930845.9961874-CDS-C-linearis_contig99:136229..136547Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 136230..136547 +
1690881279.6330256-CDS-C-linearis_contig99:136229..1365471690881279.6330256-CDS-C-linearis_contig99:136229..136547Chordaria linearis ClinC8C monoicousCDSC-linearis_contig99 136230..136547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig99.17149.1

>prot_C-linearis_contig99.17149.1 ID=prot_C-linearis_contig99.17149.1|Name=mRNA_C-linearis_contig99.17149.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=106bp
MLRLAQLRHNRAVVYKYFCGTQSLHTRLLRLAQSSHAHAVASRTAVSTLL
YALLFVLLVVGTPVYRVGSCYRAACLALVVSRPTTPWRSGCPLLRRAVAT
YCWLC*
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mRNA from alignment at C-linearis_contig99:135936..136551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig99.17149.1 ID=mRNA_C-linearis_contig99.17149.1|Name=mRNA_C-linearis_contig99.17149.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=616bp|location=Sequence derived from alignment at C-linearis_contig99:135936..136551+ (Chordaria linearis ClinC8C monoicous)
TCTAATCGTCAGTGGACGTGTGCTCTCTTCCTCTACCATATGCATGTCAC
CTGGGGTGTTAACCGCTAGGCATGTCGTGCGTGGTCTGAGTTTTTCGGCG
TACAGGCTGCTAGTAGACGCCGTTGTGCTCCGGCCGCCAGCCGTATGTAC
GAGGTGCTTGTCACGCTGCTGATAGCCAAACGCAGTTAGTTGTGGGTAGA
CGCCCTGGTGGTTGTAGTGACTTCCTGTCGCCTGATTTCGCTGTGCGTAC
TGAACGCAACTCCAGGCTGCTGCGACTAGCGCCGTCTTCGCACGATGTTG
CGGCTGGCACAGCTCCGACACAACCGCGCTGTTGTATACAAGTACTTCTG
CGGCACGCAGTCATTACATACCAGGTTGCTGCGGCTAGCGCAGTCTTCAC
ACGCACACGCTGTTGCGTCTCGCACAGCAGTGTCAACGCTGTTGTACGCG
CTGTTGTTTGTCTTGCTCGTTGTCGGCACTCCTGTGTACCGCGTGGGCAG
TTGCTACAGGGCGGCTTGCCTTGCCCTCGTTGTCAGCCGGCCGACCACGC
CGTGGAGGTCGGGTTGCCCGCTCTTGCGCCGGGCGGTTGCTACATATTGT
TGGTTGTGTTGATGGC
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Coding sequence (CDS) from alignment at C-linearis_contig99:135936..136551+

>mRNA_C-linearis_contig99.17149.1 ID=mRNA_C-linearis_contig99.17149.1|Name=mRNA_C-linearis_contig99.17149.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at C-linearis_contig99:135936..136551+ (Chordaria linearis ClinC8C monoicous)
ATGTTGCGGCTGGCACAGCTCCGACACAACCGCGCTGTTGTATACAAGTA
CTTCTGCGGCACGCAGTCATTACATACCAGGTTGCTGCGGCTAGCGCAGT
CTTCACACGCACACGCTGTTGCGTCTCGCACAGCAGTGTCAACGCTGTTG
TACGCGCTGTTGTTTGTCTTGCTCGTTGTCGGCACTCCTGTGTACCGCGT
GGGCAGTTGCTACAGGGCGGCTTGCCTTGCCCTCGTTGTCAGCCGGCCGA
CCACGCCGTGGAGGTCGGGTTGCCCGCTCTTGCGCCGGGCGGTTGCTACA
TATTGTTGGTTGTGTTGAATGTTGCGGCTGGCACAGCTCCGACACAACCG
CGCTGTTGTATACAAGTACTTCTGCGGCACGCAGTCATTACATACCAGGT
TGCTGCGGCTAGCGCAGTCTTCACACGCACACGCTGTTGCGTCTCGCACA
GCAGTGTCAACGCTGTTGTACGCGCTGTTGTTTGTCTTGCTCGTTGTCGG
CACTCCTGTGTACCGCGTGGGCAGTTGCTACAGGGCGGCTTGCCTTGCCC
TCGTTGTCAGCCGGCCGACCACGCCGTGGAGGTCGGGTTGCCCGCTCTTG
CGCCGGGCGGTTGCTACATATTGTTGGTTGTGTTGA
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