mRNA_C-linearis_contig98.17122.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17122.1
Unique NamemRNA_C-linearis_contig98.17122.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match: A0A6H5K045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K045_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 2.950e-58
Identity = 129/267 (48.31%), Postives = 163/267 (61.05%), Query Frame = 2 
Query:  113 LPPRTPLRSA------RRAPVGYRRSLST----------GVQQASPSR-RLAVAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDS----------DSDPVEKVDQPLPAHGEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVEEGYLCWSGIFPP--FNKTKVSAQKLLKASRAGCLVNVKMSDQGDVLFKCARVTEAIVLQTGLNGLIRTCNNSS 814
            LPPR P   A      R  PVG+RRS S+            ++ SP R +  V P +  +    D++D+SHLDGLYFE +                +ER LP YP ++     GI+DDC  D+DS          D     ++D     +GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN EEG+LCW G  PP  F+KTKV AQKLLKASR G LV V ++D+GDV F+C R+TEAIVL+ GLNG+IR CNN+S
Sbjct:    2 LPPRPPTFHAASPAKRRPVPVGFRRSSSSVNSSSRGQEEQKRELSPRRSKRLVRPQSARFHSSHDVLDTSHLDGLYFEHQRAQALLRLRQEGRR--QERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKCPASADDKFTTSELDDTR-RYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPYAFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTS 265
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BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Match: D8LJT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.300e-24
Identity = 85/199 (42.71%), Postives = 108/199 (54.27%), Query Frame = 2 
Query:  113 LPPRTP-LRSA-----RRAPVGYRRSLST-----GVQQASPSRRLA-------VAPLARSYSQGRDIIDSSHLDGLYFEQEXXXXXXXXXXXXXXXXEERVLPSYPLQN----FGIIDDCCGDDDSDSDPVEKVDQPLPAH--------------GEHSAEEIALRRFMSTVAWGPGLAVVKHNRGKGRGRRLLKFNVE 601
            LPPR P L +A     R  PVG++RS S+       Q+    R L+       V P +  +   +D++D+SHLDGLYFE +                +ER LP YP ++     GI+DDC  DDD DS P  K  +P  AH              GE+SAEEIALRRFM+ VAWG GL VVK+NRG+GR RR+LKFN E
Sbjct:    2 LPPRPPPLHAASPAKRRSVPVGFKRSSSSVNSSSRGQEEEQKRELSPRRNNRLVRPQSARFHSSQDVLDTSHLDGLYFEHQRAQELRLRQEGRR---QERKLPVYPSKSAAVKVGIVDDC--DDDEDS-PAAK--RPASAHDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K045_9PHAE2.950e-5848.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJT7_ECTSI1.300e-2442.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:352540..357604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000080.1
Exons2
Model size3053
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17122.1prot_C-linearis_contig98.17122.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 352637..355383 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.7391503-UTR-C-linearis_contig98:352539..3526361622930840.7391503-UTR-C-linearis_contig98:352539..352636Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 352540..352636 +
1690881276.862547-UTR-C-linearis_contig98:352539..3526361690881276.862547-UTR-C-linearis_contig98:352539..352636Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 352540..352636 +
1622930840.7854507-UTR-C-linearis_contig98:355383..3576041622930840.7854507-UTR-C-linearis_contig98:355383..357604Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 355384..357604 +
1690881276.8907695-UTR-C-linearis_contig98:355383..3576041690881276.8907695-UTR-C-linearis_contig98:355383..357604Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 355384..357604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.7550733-CDS-C-linearis_contig98:352636..3531401622930840.7550733-CDS-C-linearis_contig98:352636..353140Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 352637..353140 +
1690881276.872722-CDS-C-linearis_contig98:352636..3531401690881276.872722-CDS-C-linearis_contig98:352636..353140Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 352637..353140 +
1622930840.7674563-CDS-C-linearis_contig98:355152..3553831622930840.7674563-CDS-C-linearis_contig98:355152..355383Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 355153..355383 +
1690881276.8816447-CDS-C-linearis_contig98:355152..3553831690881276.8816447-CDS-C-linearis_contig98:355152..355383Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 355153..355383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17122.1

>prot_C-linearis_contig98.17122.1 ID=prot_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=245bp
MPVSKLPPRTPLRSARRAPVGYRRSLSTGVQQASPSRRLAVAPLARSYSQ
GRDIIDSSHLDGLYFEQEQQQLQQQQHQQRQRQREERVLPSYPLQNFGII
DDCCGDDDSDSDPVEKVDQPLPAHGEHSAEEIALRRFMSTVAWGPGLAVV
KHNRGKGRGRRLLKFNVEEGYLCWSGIFPPFNKTKVSAQKLLKASRAGCL
VNVKMSDQGDVLFKCARVTEAIVLQTGLNGLIRTCNNSSSSSKE*
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mRNA from alignment at C-linearis_contig98:352540..357604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17122.1 ID=mRNA_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5065bp|location=Sequence derived from alignment at C-linearis_contig98:352540..357604+ (Chordaria linearis ClinC8C monoicous)
AGCTGCTGCTGATACCACTTTTCAGGACACAATTGCACCAGCAGACGCCC
ATTTTTCATTTTTCTATCGCAAGTCAGCCTCTTGGAGCAGGGCCACCATG
CCGGTCAGCAAGCTTCCCCCCCGAACACCCTTGCGTTCGGCGAGACGAGC
GCCCGTGGGCTACCGGCGCTCGCTGAGCACCGGCGTGCAGCAGGCGTCAC
CAAGTCGTCGCCTTGCTGTCGCGCCTCTTGCCCGCTCTTACTCACAGGGC
CGAGACATCATAGACAGCTCGCACCTCGACGGCCTGTACTTCGAGCAGGA
GCAGCAGCAGCTGCAGCAACAACAGCATCAGCAGCGGCAGCGGCAGCGGG
AGGAGAGGGTTCTTCCTTCCTACCCCTTACAGAACTTCGGTATCATCGAT
GACTGCTGTGGCGATGATGATAGCGACAGCGATCCTGTGGAGAAGGTCGA
CCAACCTCTGCCCGCGCACGGGGAGCACTCGGCAGAAGAGATCGCGCTAA
GGAGATTCATGAGCACCGTCGCTTGGGGGCCCGGATTGGCTGTGGTGAAG
CACAACCGCGGCAAGGGACGGGGTCGTCGGCTGCTCAAGTTTAACGTCGA
GGTGAGACAAGAACGACGGTTTACATTAGAAGCCGCCGTAAGACGTTACG
CATGTAACCAAAAGCCGGGTTGATGTTATGTGGGAACCGCCTCCTGCAGA
AGCATACCTACAGTTTTGGAGTTGCCGCTGAGCTCTCGGGCGCTAATGAT
GCTGTCCTGGACCGAGACCGTTGGGTCCGGAGCAATCGGTTCCTCCTTAC
AGACGCTGTGAGCTCGCTGTGCGAGCGAGCCCCAATTCTCAATACAGCAC
AGCAGGAAACATGCGAGATTTTGAGAGGTCGGAATTCGCAACATCGTGAC
AACAGACGGCTGACACTGCTGAGTAGGCAAATCTTGTGTAAAGCGAAGGC
TGTATACCCTCTATCTAGGCATGTAAAGCTCTGCGTGCGCGCTACAATTT
TATTTCCTTCGTTTGCCTGAAGAGCTCGTCGTCTATCCGACCTGCGCTGG
CTTTCGAGAAGGCGCATCGAAGTGTGGGTACATGCAGATTTTTGGTGGAC
ATGCTAAGATATTCCGCATTTTGGCTCCATCAAGCTTACATACGTAGACG
TGTAGTCTTATGTCTAAAATCTGCGATCTACCGCTGTTCCGAGGGTAAGA
CCTCTGTAGATCTGGTCGAGGCTTGCGTACTACGCAGGTGTGTTGAGCTC
GTGTAGGTGTCAGTGCTGATCCAGTGCCGCGGCTGATCGCGGTTCACACA
CGCCCCGAGCACGCGAGCAAACCCACTACTTCATTGTTGTTACGAGTTTT
CTGTCAAAAGTGCACCCGACTTTGTTTAGTCGCGAAAGAGCCGGTGATTG
CCCAGCCAGCGGAAAAGGGGCCGTCCGCCCGCGACTCATCATAGTTTGGG
TTACTTAGCGCCGCTGTCGTAAGATATGTCGGCAGAAACGCTCCATCACT
TTTTTCCTTCGTCAGGAGATCCCGCGCACTCCGCTCCCTAACAAAAGTGC
AAGGACTCTGTTGGAACGGTTGGAACCCAGGCTCCCTAACGCAAGTGCAA
GTCTAATGGGAGCGACTTTCAAATTTTTCAGCGCGGACACACTTTTTTTG
TGCTCTTTGTTTGGCTCGCTCTTGGTTTGGCGCTTGTTTCATGTTCTCTG
CCTTTCCGATCTCCTCCAAGCTGCTTCTCGGCCGGCCGCTCTCCGCTCTC
TGCCCCAACCATTCCTGGGCTGTATGGTTCTTACGAGATGGCAGCAGCAT
TGCATTGTTGACGTTGATTGTACATATTTACGTCCGGTGCGTACAGCAGT
ATTCTCGTACAAATCATACTTCGAATGTGTCGAATATGTATCCTTACATC
GTACTGCGATAAATTACATCCACAACTTTTTTTTTTTTTCTTAGTTTCTT
TTCGGCGTTAAGTTGCCCAGTTGTGTGACCACGGGCTCCCACGGATGTTT
TGGAATATAGAGCTATAAATGTGAGAAACAAACAAAAAACATCCACAACT
ACAACTCGGAATTGAATGCCAAAATAAATACCATTGTAGGATGATGTAAC
AGAGGATATACGGAGTAACATGTGTGTGAGCCTGTGATGAGTTTCCCGAA
AGTTTCCGAACAGCGATGGAATGCTTGTAGACTATAGAGCATAGTCTAGC
TATCATACATCGTACTCGTATATCTATTGCGCGTGTATTTTCGATGCTCC
GGGCGCGCTCCTCGCTCCTTGTACATACTTGGAAGCAAACCGTGGTTCGT
GTAATACTTCGAAGTAAATACCAAACATACATACCAGGTACCTGTGTTTT
TTCAGTCGAAACTTGTACGGGCAGCATCGTTCGCGTATTAACTCCTTGTC
AGCATCTATCTGTAGTCGGTTGCAAAAATCAAACTGCATGTATGTATTGA
ACTAGTCTATCAACCCACCCAGTTCGGGACTTAGACTATCTCTTTGAGGG
GAGGTTCTTTCTTTGATGCTGTTTTGATTTACAAAAAACTCCAGCCCTCT
GACAGGGCGTTCCGCCTCCCCACCCCTGGCCCTCCCACAATATCTCCACT
TTCACTTTGCCAGGAGGGATATCTCTGCTGGTCAGGGATTTTTCCGCCCT
TCAACAAGACCAAGGTCTCAGCCCAGAAGCTGCTCAAGGCGTCCAGGGCC
GGCTGCCTCGTGAACGTAAAGATGTCGGACCAGGGGGACGTGCTTTTCAA
GTGCGCTCGGGTGACTGAGGCCATCGTCCTGCAGACCGGCTTGAATGGGC
TCATTCGCACGTGCAACAACAGCAGCAGCAGCAGTAAGGAGTGAACAGAG
AAGAGTGGTGGGGTGATGTCATCGGAACAAGAAGTCGAAAGTAGGCAACA
ATAAGCAGCCTTGGTCAAGAAGGAGTAGCGCTCTTGGTCTTCCAACCTCG
AGGGAGGGAAGGCTGGTTCGCGTAGTCTTCCTTTCAATGGTCGGTTGTGG
CCTGGCCCCTGTTGATGATTACTCTCCCCACATACATACATGTGATTGCC
GTCTACCCTCTTAATACTTACTACACAGAAAGGCGATTTCTGTGGGTGGT
GTGGTGTTGATTTTGGTGCAGGGCTGAGCTTCTCCTCTCCTCTTGCGGGT
GTGGCGTGCGTAGAAAGCTCCAAACATCCAAATATCCTATGGGGCACACA
TAGAGGACCGAGACTAGAGAGGGATGGGTTATTATATGACATATGGCATA
GACTTTGGTTGCTGTGCATGTTTTTTGGGGGCGACACGGTGTGTTCGTCT
ATAATAATAATGCGTTGTTCGATTGACCTGGCACAGCATGAGTACGTTCA
TTTCAAAAGTCAGAGGAGCACAAGCACAAGCCCCCTGGCGAGCTTTGGCT
GATTTGCGATACAGTATTTAAATACGAAGTATTTCGCGTGCGAGAGCTCA
AAAGGCGCAGGTTAGGGGGATACGTATCTCTTGTGGGTTTGGCGGGCGGG
TGGACAGCGTAGGCGCTTTTTTTGAAAGGTTCACTCTGCTTTCCTTTTCA
TTATTGATAGATACATACTCTGCATCGTAATTTAGCGGGGCTGACCCGCC
CCAACCGTTCTTCCCCGTATCTATCATAGATACACCCGGTCGAGACTCAT
TTGGGCCGTCTCGTACGAAGGAGAATTGGCGACAAACCCTCAACGTCATT
GGGGCTTGTGCTTTTCCCGTTTCCCCAGAGTTTAGTCTAATAACTTAGGG
TTGATGTTTACTCACTCGTGGTTGGGTGAGTTGTTGGGCCAGGAGCGGAT
GCGAAGAGTGCCACTCTCGACGAGGAGACAGCTCGCCCACCTATCTATAC
ACTCGTGTTTTCAGGTTCAGGGGCAGCGTTTACGAGTGCTTGGAAGCCTG
TTGTATTATCTGCTGCAGTATAGTAATAGGTGGTCGTATCGTCGTATTGT
GTCTTTGAGAGCCTCTGGTGCTCGATTCTGATGCATGTAGCCTTGGGTTT
CCCGATTTCTAAAGAACGGATTCATTCATGTCATCCGGTCCGAGCATAAT
TAGTGTGCTAGCTTTATTTTCGTAATCTCACGTACTCTCTTGCTGACTTA
CTTGGCTCGTGTCTCGTCAACTCGGTTTCGACAGGAAGGTCGTTCTTTCT
TTTCCATGTAATATGACGTTGCTGTCTGTCGTTGGTGCAACTCCCTCACC
GCCGCAGGCGTTTTTGATGCAGAAATTGGTTGTTGGCAGTATGTGTGCGT
GTTTTGTGCTGTGCGCGCCAGTATAAGGTAAGTAAGGCTACATGCTTGGC
ATATAGATCTATATATCTGGGGAAGCTTCGGGAAGAGGAAAATATTAAAT
TGTTTTGGTCGTTGTTCATCATGTTTGAGGGCGTTTTTTTCGGAGTATCG
TTTGTCTCGTAGTCTACGTAGTAGGTCAGGGCGTGGGCACTTACGTACGT
ACCTGCATGGTTTCTTCTGATTTTATGGAAAAAAAAACTTATCACATACA
TAGTGGCGCAGTTCGCCTCGCTACGCTGGAAGAGAGAAAGAGAGGAGCCT
CGCGTGCTTGTTGCAGTAAAGTTCGTCCTTAAATATTCAATCCTGACTCC
GGCTCTACGAGTTTAATCCAGTTTAAAAGGCAGACGGTATCATCCTGGTC
CCTGTTTTTTGCGCTACGGTTTGGGAAATCCCTATTATCCAGTACAGCAG
TACACGTCTAGAACACTTTCGTTGCGTATCTGGTGTGCGTAGAGGGCATA
CTTCGTATCTATCTATGCACACATTTTTTGTCCGGAGAGCGTTCGGAAGA
GGGTCGCTGTTGCTCTTTATGGTGGTCAAGAGATTCGGGCAGCTCTTTCG
GAGCAGCGCTCTTCTGCGTAGCTGTAGCGTGAGACAACCAAATAGATGTA
GCTTGAATTGGGAGGAGAGAGAGGCTGCGCGCGTGGATATTGCTCGGTAT
GCGAAGGTGCCGAGTTTGTTGGGGGTTCCACTCAGCTCTTTTTATCTTTT
GTCTTGATGTTTCGAAAATAACCCTTCTTTTTTAATTTAGATGAAAAAAA
CGTGCGCATCCAACT
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Coding sequence (CDS) from alignment at C-linearis_contig98:352540..357604+

>mRNA_C-linearis_contig98.17122.1 ID=mRNA_C-linearis_contig98.17122.1|Name=mRNA_C-linearis_contig98.17122.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at C-linearis_contig98:352540..357604+ (Chordaria linearis ClinC8C monoicous)
ATGCCGGTCAGCAAGCTTCCCCCCCGAACACCCTTGCGTTCGGCGAGACG
AGCGCCCGTGGGCTACCGGCGCTCGCTGAGCACCGGCGTGCAGCAGGCGT
CACCAAGTCGTCGCCTTGCTGTCGCGCCTCTTGCCCGCTCTTACTCACAG
GGCCGAGACATCATAGACAGCTCGCACCTCGACGGCCTGTACTTCGAGCA
GGAGCAGCAGCAGCTGCAGCAACAACAGCATCAGCAGCGGCAGCGGCAGC
GGGAGGAGAGGGTTCTTCCTTCCTACCCCTTACAGAACTTCGGTATCATC
GATGACTGCTGTGGCGATGATGATAGCGACAGCGATCCTGTGGAGAAGGT
CGACCAACCTCTGCCCGCGCACGGGGAGCACTCGGCAGAAGAGATCGCGC
TAAGGAGATTCATGAGCACCGTCGCTTGGGGGCCCGGATTGGCTGTGGTG
AAGCACAACCGCGGCAAGGGACGGGGTCGTCGGCTGCTCAAGTTTAACGT
CGAGATGCCGGTCAGCAAGCTTCCCCCCCGAACACCCTTGCGTTCGGCGA
GACGAGCGCCCGTGGGCTACCGGCGCTCGCTGAGCACCGGCGTGCAGCAG
GCGTCACCAAGTCGTCGCCTTGCTGTCGCGCCTCTTGCCCGCTCTTACTC
ACAGGGCCGAGACATCATAGACAGCTCGCACCTCGACGGCCTGTACTTCG
AGCAGGAGCAGCAGCAGCTGCAGCAACAACAGCATCAGCAGCGGCAGCGG
CAGCGGGAGGAGAGGGTTCTTCCTTCCTACCCCTTACAGAACTTCGGTAT
CATCGATGACTGCTGTGGCGATGATGATAGCGACAGCGATCCTGTGGAGA
AGGTCGACCAACCTCTGCCCGCGCACGGGGAGCACTCGGCAGAAGAGATC
GCGCTAAGGAGATTCATGAGCACCGTCGCTTGGGGGCCCGGATTGGCTGT
GGTGAAGCACAACCGCGGCAAGGGACGGGGTCGTCGGCTGCTCAAGTTTA
ACGTCGAGGAGGGATATCTCTGCTGGTCAGGGATTTTTCCGCCCTTCAAC
AAGACCAAGGTCTCAGCCCAGAAGCTGCTCAAGGCGTCCAGGGCCGGCTG
CCTCGTGAACGTAAAGATGTCGGACCAGGGGGACGTGCTTTTCAAGTGCG
CTCGGGTGACTGAGGCCATCGTCCTGCAGACCGGCTTGAATGGGCTCATT
CGCACGTGCAACAACAGCAGCAGCAGCAGTAAGGAGTGAGAGGGATATCT
CTGCTGGTCAGGGATTTTTCCGCCCTTCAACAAGACCAAGGTCTCAGCCC
AGAAGCTGCTCAAGGCGTCCAGGGCCGGCTGCCTCGTGAACGTAAAGATG
TCGGACCAGGGGGACGTGCTTTTCAAGTGCGCTCGGGTGACTGAGGCCAT
CGTCCTGCAGACCGGCTTGAATGGGCTCATTCGCACGTGCAACAACAGCA
GCAGCAGCAGTAAGGAGTGA
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