mRNA_C-linearis_contig98.17118.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17118.1
Unique NamemRNA_C-linearis_contig98.17118.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: D7G9J1_ECTSI (Chromosome 10 open reading frame 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9J1_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 7.420e-68
Identity = 177/277 (63.90%), Postives = 194/277 (70.04%), Query Frame = 3 
Query:  648 MASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGARGDGKSTGKRRNSDGTSVSSR---GGDSTRGEENIEDDL-EGHDLVRRAVAXXXXXXXXXXXXXXXXSAKKRTRPSRWGDKINQSQEGAAAATAKSDGGSGSSGVATGSGGAVGDEAARQAWAGELERDRTAEDDMDDYLSSLLL 1466
            MA+KYYKLLFKEYALADLSRYREDKVGLRWRTE+DVVSGKGQFECGALRCQERKDLHSYELNF+YKEAG VKNELVKVRVCPQCARKLFRKKIEALRR+   XXXXXXXXXXXXXXXXXXXXXXXXXX               +S   SVS+      D   G +  E    EGHDL+R+AVA                 AKKR RPSRWGD+++ S+  A                        GD+A+R+AWAGELERDRTAED+MDDYLSSLLL
Sbjct:    1 MAAKYYKLLFKEYALADLSRYREDKVGLRWRTEKDVVSGKGQFECGALRCQERKDLHSYELNFKYKEAGAVKNELVKVRVCPQCARKLFRKKIEALRRQRKAXXXXXXXXXXXXXXXXXXXXXXXXXX---------------SSPSGSVSATPDGNADDRHGRKLRETSAGEGHDLIRQAVAAAGGTQT---------DAKKRNRPSRWGDRLDSSERTAXXXXXXXXXXXXXXXXXXAM---AGDDASRKAWAGELERDRTAEDEMDDYLSSLLL 250
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: L8GSW9_ACACA (Uncharacterized protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW9_ACACA)

HSP 1 Score: 157 bits (398), Expect = 5.320e-40
Identity = 82/173 (47.40%), Postives = 115/173 (66.47%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKK 923
            MNAY RHQ  IR+Y  Y+   K+P   A+  KP       +D++ L++Q+RF+R +E+D           A+    AWE R+A +YY+ L++EY +ADL+RYRE +VG+RWR E++V+ GKGQF CG   C+ ++DL SYE+NF+Y EAG  KN LVK+R+CP CA KL  KK
Sbjct:    1 MNAYERHQRYIRDYVLYYGRGKLP---AVPQKPT-----KSDDDILKQQYRFIRTEEDDR----------ADDSREAWEKRLARRYYERLYREYCIADLTRYREGQVGMRWRVEKEVIIGKGQFICGNKHCEAKEDLKSYEVNFQYAEAGETKNALVKLRLCPPCAYKLNYKK 155
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A7S1SWE2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWE2_9CHLO)

HSP 1 Score: 150 bits (378), Expect = 2.520e-38
Identity = 86/180 (47.78%), Postives = 116/180 (64.44%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQL-TDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRR 941
            +NAY RH++ + +Y  ++   K+PS         PG   + TD ++++  HRF+R +E+D      K L         WEV++A KYY  LFKEY LADLSRY+E K+G+RWRTE++VVSGKGQF CG  +C  R+ L SYE+NF YKEAG  K  LVK+RVCP+CA KL   + +A RR
Sbjct:   12 LNAYERHKKFVHDYLTFY-GGKLPSR-------EPGDATVKTDWDSVKEHHRFLRSEEDD------KEL--------TWEVKLARKYYAKLFKEYCLADLSRYKESKIGMRWRTEKEVVSGKGQFVCGNKQCGNRQGLGSYEVNFGYKEAGEHKQALVKLRVCPECADKLNYNRKKAYRR 169
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A5J4XDC7_9CHLO (FRA10AC1 domain-containing (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC7_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 8.320e-38
Identity = 86/177 (48.59%), Postives = 110/177 (62.15%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEAL 935
            ++A+ RHQ L++N  +Y+     P    ++          TD + L+ Q+RFVR  E+D                 +W+VRMA +YY  LFKEYA+ADLSRYRE KVGLRWRTER+VV GKGQF CGA  C ER+ L SYE+NF YKEAG  K  LVKVRVCP+ A +L  K+ + L
Sbjct:   25 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDD--------------STDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 177
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A8K1C360_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C360_PYTOL)

HSP 1 Score: 150 bits (379), Expect = 3.140e-37
Identity = 91/175 (52.00%), Postives = 112/175 (64.00%), Query Frame = 3 
Query:  414 YARHQELIRNYH--RYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEA 932
            + RHQEL+R Y     H +A      A + +P        D +ALRR  +F+RD EED +    +G E        W+VRM+ +YY+ LF+EYALADLSRY E K+GLRWRTE++VVSGKGQF CG  RC ER+ LHSYEL F Y E G  K  LVKVR C  CARKLF KK++A
Sbjct:   25 HERHQELMRVYQDATQHEHAD-----ATDVRPE-------DLDALRRNFQFIRDDEEDIK----RGSED-------WQVRMSVRYYRQLFREYALADLSRYEEGKIGLRWRTEQEVVSGKGQFSCGNKRCDERRRLHSYELLFAYVEQGEKKRCLVKVRACEACARKLFYKKLKA 176
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A7S2WRJ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRJ6_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.450e-37
Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 3 
Query:  522 LTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKL 911
            +TD++ LR+ HRFV   E+         L G E   ++WE RM+ KYYK LFKEYALAD+SRYRE K+GLRWRTE++VV GKGQF CG  +C  R  LHS+E+NF+YKE G V+NELVK+R+C +CA+K+
Sbjct:   22 VTDQDVLRKHHRFVIHDED---------LSGME---NSWETRMSIKYYKKLFKEYALADMSRYREGKIGLRWRTEQEVVDGKGQFVCGNKKCDTRDGLHSFEVNFKYKEHGTVRNELVKLRLCRRCAKKM 139
[Close]
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A5J4XDC1_9CHLO (FRA10AC1 domain-containing n=2 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDC1_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 6.660e-37
Identity = 86/177 (48.59%), Postives = 110/177 (62.15%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEAL 935
            ++A+ RHQ L++N  +Y+     P    ++          TD + L+ Q+RFVR  E+D                 +W+VRMA +YY  LFKEYA+ADLSRYRE KVGLRWRTER+VV GKGQF CGA  C ER+ L SYE+NF YKEAG  K  LVKVRVCP+ A +L  K+ + L
Sbjct:   76 LSAFDRHQSLMKNAIKYYRAQLPPEQQTVK----------TDYDVLKEQYRFVRTAEDD--------------STDSWDVRMARRYYAKLFKEYAVADLSRYRESKVGLRWRTEREVVIGKGQFVCGAKGCDERRALASYEVNFAYKEAGERKQALVKVRVCPKHAMQLNHKQNQQL 228
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A835Z2P9_9STRA (Folate-sensitive fragile site protein Fra10Ac1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2P9_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.100e-36
Identity = 85/182 (46.70%), Postives = 117/182 (64.29%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGV--VKNELVKVRVCPQCARKLFRKKIEALRRR 944
            M+AY +H+ L+R+Y ++         G + A P       TD + L R ++F+RD+E             A+A  S+WEVRMA KYY+ L KEYA+ DLSR+R+  VGLRWRTE +V+ GKGQ+ECGA  C  R DLHSYE+NF + +A     +NELVKVR+C  CA+KL+ +K++ LRRR
Sbjct:    1 MSAYDKHKRLMRSYLQHKQEG---GGGGLPAGPE------TDMDILVRHNQFIRDEE-------------ADAKSSSWEVRMALKYYQRLCKEYAICDLSRHRDGAVGLRWRTEGEVLGGKGQWECGARGCDARDDLHSYEVNFAFVDAATREARNELVKVRMCADCAQKLYYRKLKELRRR 160
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BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A2P4XK42_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XK42_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.530e-36
Identity = 83/177 (46.89%), Postives = 108/177 (61.02%), Query Frame = 3 
Query:  414 YARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRRR 944
            + RHQEL++ Y      +   +S      P   Q   +D   L+++ +F+RD E D           AEA    W+VRM+ +YY+ LF+EYALADLSRY+E K+GLRWRTE +V++GKGQF CG  RC ER  LHSYEL F Y E G  K  LVKVR C  CA KLF KK+  ++R+
Sbjct:   16 FRRHQELMQLYSTSTRRSASIASTTSSITPHNDQASQSDLAVLKQKFQFIRDDEAD-----------AEAGEMDWQVRMSVRYYRQLFREYALADLSRYKEGKIGLRWRTEMEVIAGKGQFSCGNKRCDERTGLHSYELLFAYVEHGERKRCLVKVRACSVCAEKLFYKKLMEVKRK 181
[Close]
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Match: A0A1Y1IE55_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IE55_KLENI)

HSP 1 Score: 147 bits (372), Expect = 5.120e-36
Identity = 87/179 (48.60%), Postives = 112/179 (62.57%), Query Frame = 3 
Query:  405 MNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTDEEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFKEYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYELNFRYKEAGVVKNELVKVRVCPQCARKL-FRKKIEALR 938
            +NAY RH+  + +Y +++ + K     A    PV      TD + LR  +RF+R  E+D             AD S WE R+A +YY  LFKEY +ADLSRY+E KVGLRWRTE++VV+GKGQF CG     ER  L SYE+NF YKEAG  KN LVK+R+CP+CA KL +RK+ E  R
Sbjct:   28 LNAYDRHKRFVEDYVKFYGDGKYEPPKA----PV-----KTDSDILRESYRFLRSDEDD-------------ADTS-WEARLAKRYYDKLFKEYCIADLSRYKESKVGLRWRTEKEVVAGKGQFICGNKEHGERNGLRSYEVNFAYKEAGEEKNALVKLRLCPKCAYKLNYRKEKELAR 183
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9J1_ECTSI7.420e-6863.90Chromosome 10 open reading frame 4 n=1 Tax=Ectocar... [more]
L8GSW9_ACACA5.320e-4047.40Uncharacterized protein n=1 Tax=Acanthamoeba caste... [more]
A0A7S1SWE2_9CHLO2.520e-3847.78Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A5J4XDC7_9CHLO8.320e-3848.59FRA10AC1 domain-containing (Fragment) n=1 Tax=Treb... [more]
A0A8K1C360_PYTOL3.140e-3752.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2WRJ6_9STRA4.450e-3756.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5J4XDC1_9CHLO6.660e-3748.59FRA10AC1 domain-containing n=2 Tax=Trebouxia sp. A... [more]
A0A835Z2P9_9STRA1.100e-3646.70Folate-sensitive fragile site protein Fra10Ac1-dom... [more]
A0A2P4XK42_9STRA1.530e-3646.89Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A1Y1IE55_KLENI5.120e-3648.60Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:281450..286432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score238.4
Seed ortholog evalue5.9e-60
Seed eggNOG ortholog2880.D7G9J1
Preferred nameFRA10AC1
KEGG koko:K01230,ko:K01363,ko:K13121
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04140,ko04141,ko04142,ko04210,ko04612,ko04621,ko04924,map00510,map00513,map01100,map04140,map04141,map04142,map04210,map04612,map04621,map04924
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Folate-sensitive fragile site protein Fra10Ac1
EggNOG OGsKOG1297@1,KOG1297@2759
Ec32 ortholog descriptionFolate-sensitive fragile site protein Fra10Ac1
Ec32 orthologEc-00_011460.1
EC3.2.1.113,3.4.22.1
COG Functional cat.S
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko01002,ko03041,ko03110,ko04131,ko04147
Exons7
Model size2224
Cds size1239
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.281782-UTR-C-linearis_contig98:281449..2816791622930839.281782-UTR-C-linearis_contig98:281449..281679Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 281450..281679 +
1690881276.137043-UTR-C-linearis_contig98:281449..2816791690881276.137043-UTR-C-linearis_contig98:281449..281679Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 281450..281679 +
1622930839.4376194-UTR-C-linearis_contig98:285677..2864321622930839.4376194-UTR-C-linearis_contig98:285677..286432Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 285678..286432 +
1690881276.2284486-UTR-C-linearis_contig98:285677..2864321690881276.2284486-UTR-C-linearis_contig98:285677..286432Chordaria linearis ClinC8C monoicousUTRC-linearis_contig98 285678..286432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.295714-CDS-C-linearis_contig98:281679..2819001622930839.295714-CDS-C-linearis_contig98:281679..281900Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 281680..281900 +
1690881276.1474502-CDS-C-linearis_contig98:281679..2819001690881276.1474502-CDS-C-linearis_contig98:281679..281900Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 281680..281900 +
1622930839.309789-CDS-C-linearis_contig98:282464..2826091622930839.309789-CDS-C-linearis_contig98:282464..282609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 282465..282609 +
1690881276.158798-CDS-C-linearis_contig98:282464..2826091690881276.158798-CDS-C-linearis_contig98:282464..282609Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 282465..282609 +
1622930839.3286161-CDS-C-linearis_contig98:283199..2833091622930839.3286161-CDS-C-linearis_contig98:283199..283309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 283200..283309 +
1690881276.1815207-CDS-C-linearis_contig98:283199..2833091690881276.1815207-CDS-C-linearis_contig98:283199..283309Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 283200..283309 +
1622930839.3465958-CDS-C-linearis_contig98:283914..2839751622930839.3465958-CDS-C-linearis_contig98:283914..283975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 283915..283975 +
1690881276.191837-CDS-C-linearis_contig98:283914..2839751690881276.191837-CDS-C-linearis_contig98:283914..283975Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 283915..283975 +
1622930839.364375-CDS-C-linearis_contig98:284399..2845101622930839.364375-CDS-C-linearis_contig98:284399..284510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 284400..284510 +
1690881276.2011702-CDS-C-linearis_contig98:284399..2845101690881276.2011702-CDS-C-linearis_contig98:284399..284510Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 284400..284510 +
1622930839.3910239-CDS-C-linearis_contig98:285053..2851491622930839.3910239-CDS-C-linearis_contig98:285053..285149Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 285054..285149 +
1690881276.210311-CDS-C-linearis_contig98:285053..2851491690881276.210311-CDS-C-linearis_contig98:285053..285149Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 285054..285149 +
1622930839.4081924-CDS-C-linearis_contig98:285182..2856771622930839.4081924-CDS-C-linearis_contig98:285182..285677Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 285183..285677 +
1690881276.2194753-CDS-C-linearis_contig98:285182..2856771690881276.2194753-CDS-C-linearis_contig98:285182..285677Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 285183..285677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17118.1prot_C-linearis_contig98.17118.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 281680..285677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17118.1

>prot_C-linearis_contig98.17118.1 ID=prot_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=413bp
MARRSEEYARLNDGGGYTQALTVGKGFSGEERRAAKQGGSSRGKGTGSSS
GGGGGGGTMNAYARHQELIRNYHRYHPNAKIPSSGAIEAKPVPGQKQLTD
EEALRRQHRFVRDQEEDHRAHRAKGLEGAEADPSAWEVRMASKYYKLLFK
EYALADLSRYREDKVGLRWRTERDVVSGKGQFECGALRCQERKDLHSYEL
NFRYKEAGVVKNELVKVRVCPQCARKLFRKKIEALRRRQKQQQQQQREQC
QQGEGEGEEEQEEGDGAGDGARGDGKSTGKRRNSDGTSVSSRGGDSTRGE
ENIEDDLEGHDLVRRAVAAASAAGGGNGGATTTPSAKKRTRPSRWGDKIN
QSQEGAAAATAKSDGGSGSSGVATGSGGAVGDEAARQAWAGELERDRTAE
DDMDDYLSSLLL*
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mRNA from alignment at C-linearis_contig98:281450..286432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17118.1 ID=mRNA_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4983bp|location=Sequence derived from alignment at C-linearis_contig98:281450..286432+ (Chordaria linearis ClinC8C monoicous)
CCGAGAGCTAGCAGAGTGGGAGGATTCCAAAGGCTTTAGAGGGCCCATCT
CTATCTTTGCTTCGTGTGCCTCGTGCTGGCAGGTCAGATCGATAGGCCTT
GAGCCTTGAGTCAATCTATTTTGTAGAGCACCCCGGCAGAGTATTGTCCA
ATTTCTCGAGAGCTAGCCAAGGACAGCAGGCACAGCGCGTTGTATACTCG
AAGCACAGGGTGTAGCAGTGCAGCACCGAGATGGCTCGACGAAGCGAAGA
GTATGCTCGCCTTAACGACGGAGGCGGCTACACTCAAGCTCTCACCGTCG
GCAAAGGTTTCTCAGGAGAAGAGCGGAGAGCAGCGAAGCAAGGTGGCAGC
AGCAGGGGAAAGGGAACAGGTAGCAGCAGCGGAGGCGGCGGGGGCGGGGG
CACGATGAACGCCTACGCCCGACACCAGGAGCTTATCCGAAATTACCACA
GGTGTGCGGTGTGTTGTTTTTGTCATGTTGTAGACTACAGAAGATGTCTA
CATCGTCAAACTGCATCCACCCGCAGCCCATGCTTTGCGCGGAATAAGGT
GGCGGGGGAATCGTCGCGCCCCCACCGTGTGTGAGAACACGAGCACTCTA
AACCTACCATACGGCAGAACACTCTCCTCGTGCGAAGGAATTAATTGGAC
ATGGTTGGTTTGCCGCTGGTTCAAGTGTTTAATAGCGAAGTAGCAGAAGA
GCCGCACAGCAGTAGTAGCATTTGGTGCGGAAGCGGAAGCTGAGTTTCTG
CCGCTCTGTTGTTTTAGAGGGGCGCCAACTCACCTCACCTGCACTCCCTA
GGGAAACGGATTTGGTGCCACATGTGTATGATGAGCATGACAATTCAAGA
CCGCGTCTACTTCCAAGCCTTCAGCCCCCATTCTCTCTCTCGCTCTCTGA
CACAGACCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT
GTGTGTGTGTGTGTGTGTGTTTCTCGCTGTGGTTGGCTGTGCGGGGGCGC
GGTTGGGGGGTGCAGGTACCACCCGAACGCCAAGATCCCGTCGTCGGGGG
CGATAGAGGCCAAACCCGTTCCCGGCCAGAAGCAGCTGACTGATGAGGAG
GCGTTGCGGCGGCAGCACCGGTTCGTGCGGGACCAAGAAGAAGACCACCG
GGCACACCGGGTGACTGACTGAGGCGATTTGACAGTACGCTCCATGCTCC
TGTTGATCCTATCCATCGCTATTCGGTGTATCTCAAGAGGACAAGATGCG
AAGATGCATCGTTCCAAAGGGGTTCAAGAAGGAACTTAAACTTTCGATTG
GGGCGGAAACTAAGGGAACCACAAGCTGTTGGAGTCGACCCACGTAGCAA
GGAGGGAATGGTATAATATTATTTCTTGAAGGTTATCGAAGGTCTTCTAG
GAAGTGGATCCCGCTCTGCCGTGCCCCTGTTTCCCTGCGACTTTTAGAGG
TGCATAAGAGTACTCGTAAAGGATCCGCCTCCCCCCCGACAAAGCCCTGA
GTTATTCGGCTCGGCAGGAGTTTCCCGAAATAAAAGCCCGGTGTGCATAC
CAACCTGAACCTGATCATGGTGTACGACAGTAAAGCTGTTTCCTGGAGAA
CGGCTGTGTATGGTATGCCACGTCGTCCGCTTCCTCCTGTTTGAGCGTTA
CTTACAAAAACAAGTGTACCACCCCCTGCCGCCCTGCCTGTATCAAACGA
CCAAAAAACTGTTTTGCCTGGATTGCGATTTTCAAAAAAAAAATAAAAAG
GCGAAAGGGCTGGAAGGCGCAGAGGCGGACCCCAGCGCTTGGGAGGTGCG
CATGGCGTCCAAGTACTACAAGCTCCTCTTCAAGGAGTACGCCCTGGCCG
ACCTATCAAGGTGAGTGGCTGACTGACTGGCCGGCTGGCCTGCCGTCGTT
CGTGTGCGCGTCCTTATGTATCCCCGTCCTTGCAGTCAAACGAGGTTCTA
ACAATTTCCTCTCGCTGTGGGGTTGGTTACCTGCGTGCTGCCTACTTGGT
GCTACTTGGTGCAGCGCCATGCTTGTTTTCTGTCTTACATGATTTATTTT
CTATTTTCTATTCTATTCTTTTTTCGATTGGAGCATGATTGCGCTTGTTG
CGTGTTTGTGTGTAGCATCACAATACAACATGACATGGCATGACAGACGC
AGAAGGCCAGAAGGAAATGACACAAGAGAAGAGGAAGGATGGAAATGAGG
GGGGTTCCTTTCTCCATATTTTTAGCTGCTGCTGCGTTACCTACATTTCG
AAGCTCTGTGAGTGGGTGCCAGGATGACGGACCGGCATGAAGCAACCACA
TTCCTCGATGCGTCGGCACTGGTCGCCACCGGAATAACGATGAGACCGGT
AATCGCATTGACGGTTTTTTAGGTCGGGTGCCTGTGTTTGCGTTCTGAGT
TTTTTTACTTTTTACTTTATGCTGTTGAACCTTAACCTTTACCTTGGTGT
TGTTGCTTCTTTCAGGTATCGAGAAGACAAGGTCGGGCTCAGGTGGAGGA
CCGAGAGAGATGTCGTGAGCGGAAAGGTGACTTTTTGGGAGGTTCAGCCT
GCAGCACAGCACAGCACAGCACAGCACATACCGTTTCAAAGCGCGCACGA
GTAGATACCGTACGCTGCTGTACGTTTCAGGATAGGAAGACGTCGTTTAC
CGCACACCATTCGCCACGTTCGGTAGTGTTGTAGTACAAAGATAGGACTA
GGGCGTGTTAGAGCGTGTTTTTTTTCTCTCGGCAACGATGATGGTGATGT
CTCCTGTCGACTTGCTGTCTTTCTTCCTCGAAAACATGCGGCACAACCCC
AACCCCACGACAGCTGCCTGGGGGAAGTGGAAAGTGGTGATTTGATTTGC
TGATCGGGGCAAATGCTCTCAAGCACATTGCTGAGCTGAGTGGCTCATTG
CACGACGAACGCGGGTCTTCAATGGCTTGATGATGTAATGTGGTTTACAG
GGGCAGTTCGAGTGCGGAGCGCTACGATGTCAGGAGAGGAAAGATCTGCA
CAGCTACGAACTGAACTTCAGGTACAAAGAGGCCGGCGTCGTCAAGAACG
AGCTTGTCAAGGTAAGACGGTCAGGCAAACAGACATCGAAGGGCGAAGGG
CAAGAGTGACGTGTTTTGTCGTGCACTGGTAATTTACAGGTATATAATTC
GGCAGATTCTACTTTCGGCTGTCCGAGCAAAGACAAGTACGACGACAGCA
AGAACCATTTTTCTTCGATAGGTTCTCCTTCCATGGACAATATTGTGTCC
CAAACGTGGCCCTACAGGGTTAGGGTTGACAATGTTCGCAAAAAACGCGG
GCGTTTTCGGTAAGGGCCAGTTTGGACACGGCCTCCTGCGGTAATGAACG
TGCCGCGTACCAGTAGCCTCCCCTTGCCTTTTTTCCCTGCATACCCCGTG
TTCAAAATGTAGGACCTGACGTTCTCTGTATCCTAAATACTACTCTAAGT
ACGGTGAATTAGCTCTCGCCGACATCTCCGGATCTGTGCTTGCTCCCATA
GATGTTTTGCGGTTCTGATCGTGGGTTGAAAAGTGCGTTCGCATGACGTC
ACGAATCACGCCACGACTCTCTCCCCTGCCCCCTGCCTCTCCCCCTGACC
CCAGGTGCGCGTTTGCCCGCAGTGCGCCCGCAAGCTGTTCCGGAAGAAGA
TCGAGGCGCTCAGGCGGCGGCAGAAGCAGCAGCAACAGCAGCAGCGCGAG
GTGGAACGACTCCTCCTCCTTAAGACCAAGAAGCAGTGCCAACAAGGAGA
AGGAGAAGGAGAAGAAGAACAAGAAGAAGGCGATGGGGCTGGGGATGGGG
CTCGGGGGGACGGTAAGAGCACCGGAAAGAGGCGAAACAGCGACGGGACA
AGTGTGAGCTCCCGAGGAGGAGACTCTACCCGCGGGGAGGAGAACATCGA
GGATGACCTTGAGGGCCACGACTTGGTTCGCCGAGCGGTGGCGGCTGCTT
CTGCTGCCGGGGGTGGCAACGGCGGTGCCACCACCACTCCGTCAGCGAAG
AAGCGCACGAGGCCGTCGAGATGGGGAGACAAGATCAACCAATCCCAGGA
AGGAGCAGCGGCGGCAACAGCAAAGAGTGACGGGGGCAGTGGCAGTAGTG
GTGTCGCGACAGGGTCAGGCGGTGCGGTGGGTGACGAGGCGGCGAGGCAA
GCGTGGGCGGGGGAGCTGGAGAGGGATAGGACCGCGGAGGACGACATGGA
TGACTACCTCTCTTCCCTGCTCTTGTGATGCGATGTGGTACTTGTGTATC
ACTAATGTGTGCTGCGAGCTAAATGTTAATGTTGTGCACTGGACAAGAAA
CGAGTCAAGTTGATCGTGATCTAGATTAGGCAGAGTTAGAGGTGAGAGAC
GTGCGTTATTGCTATGCTTGTCGATGTTGATGAAGTAGTGCGATTGAAGT
GCCGGGAGCCAATGGTTGGCGTCCATGGTTTCAGCCCGCCGGCATCCTAC
GCGTATATACGTCTCGTGCTTGTGCTTTTGGGGTGAGGGCTTTTTTTACG
ACTTTTATTTTTTTGGTGCCGCACTAAATATCCGCGCGGCGAGCACAAAG
CACTTAGCTTGGTCCAGAGGAGTTGAACGCAGAGAATTTGTTTGTTGGCT
TGACTCGGCGTATGGTACGAAACAACACACTGCTGTGTATCCAGTCTTCG
AGCCCGGGATGGATAATCAGCAAGTTTCAAGACTACGCTTGCGCAGGGTG
CGCGTCTTGCAAGGTAGATACGAAGTGGAGACAGCCGGTGGGCGGAAGCA
AGAAGGTTTCTTGGACAAGGTGCGGGTGGTCTGTGTGCCGGGATTTGTTT
TTCGGTGACATGGGCAACTATGCTGCTGTAGCTTGGAAAACTCTCTTGTA
ACACTCTCATTGGGCGAGGGAGTGGGAGAGGTGTATAGGTGGACGGCGAA
AGGGAGAGAATTTGAAACCTTGAAACGGGTCTTCACGAATGGTGTTGCTC
TGATGGTGGGATAAGATAAAGATACCACAAAAA
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Coding sequence (CDS) from alignment at C-linearis_contig98:281450..286432+

>mRNA_C-linearis_contig98.17118.1 ID=mRNA_C-linearis_contig98.17118.1|Name=mRNA_C-linearis_contig98.17118.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2478bp|location=Sequence derived from alignment at C-linearis_contig98:281450..286432+ (Chordaria linearis ClinC8C monoicous)
ATGGCTCGACGAAGCGAAGAGTATGCTCGCCTTAACGACGGAGGCGGCTA
CACTCAAGCTCTCACCGTCGGCAAAGGTTTCTCAGGAGAAGAGCGGAGAG
CAGCGAAGCAAGGTGGCAGCAGCAGGGGAAAGGGAACAGGTAGCAGCAGC
GGAGGCGGCGGGGGCGGGGGCACGATGAACGCCTACGCCCGACACCAGGA
GCTTATCCGAAATTACCACAGATGGCTCGACGAAGCGAAGAGTATGCTCG
CCTTAACGACGGAGGCGGCTACACTCAAGCTCTCACCGTCGGCAAAGGTT
TCTCAGGAGAAGAGCGGAGAGCAGCGAAGCAAGGTGGCAGCAGCAGGGGA
AAGGGAACAGGTAGCAGCAGCGGAGGCGGCGGGGGCGGGGGCACGATGAA
CGCCTACGCCCGACACCAGGAGCTTATCCGAAATTACCACAGGTACCACC
CGAACGCCAAGATCCCGTCGTCGGGGGCGATAGAGGCCAAACCCGTTCCC
GGCCAGAAGCAGCTGACTGATGAGGAGGCGTTGCGGCGGCAGCACCGGTT
CGTGCGGGACCAAGAAGAAGACCACCGGGCACACCGGGTACCACCCGAAC
GCCAAGATCCCGTCGTCGGGGGCGATAGAGGCCAAACCCGTTCCCGGCCA
GAAGCAGCTGACTGATGAGGAGGCGTTGCGGCGGCAGCACCGGTTCGTGC
GGGACCAAGAAGAAGACCACCGGGCACACCGGGCGAAAGGGCTGGAAGGC
GCAGAGGCGGACCCCAGCGCTTGGGAGGTGCGCATGGCGTCCAAGTACTA
CAAGCTCCTCTTCAAGGAGTACGCCCTGGCCGACCTATCAAGGCGAAAGG
GCTGGAAGGCGCAGAGGCGGACCCCAGCGCTTGGGAGGTGCGCATGGCGT
CCAAGTACTACAAGCTCCTCTTCAAGGAGTACGCCCTGGCCGACCTATCA
AGGTATCGAGAAGACAAGGTCGGGCTCAGGTGGAGGACCGAGAGAGATGT
CGTGAGCGGAAAGGTATCGAGAAGACAAGGTCGGGCTCAGGTGGAGGACC
GAGAGAGATGTCGTGAGCGGAAAGGGGCAGTTCGAGTGCGGAGCGCTACG
ATGTCAGGAGAGGAAAGATCTGCACAGCTACGAACTGAACTTCAGGTACA
AAGAGGCCGGCGTCGTCAAGAACGAGCTTGTCAAGGGGCAGTTCGAGTGC
GGAGCGCTACGATGTCAGGAGAGGAAAGATCTGCACAGCTACGAACTGAA
CTTCAGGTACAAAGAGGCCGGCGTCGTCAAGAACGAGCTTGTCAAGGTGC
GCGTTTGCCCGCAGTGCGCCCGCAAGCTGTTCCGGAAGAAGATCGAGGCG
CTCAGGCGGCGGCAGAAGCAGCAGCAACAGCAGCAGCGCGAGGTGCGCGT
TTGCCCGCAGTGCGCCCGCAAGCTGTTCCGGAAGAAGATCGAGGCGCTCA
GGCGGCGGCAGAAGCAGCAGCAACAGCAGCAGCGCGAGCAGTGCCAACAA
GGAGAAGGAGAAGGAGAAGAAGAACAAGAAGAAGGCGATGGGGCTGGGGA
TGGGGCTCGGGGGGACGGTAAGAGCACCGGAAAGAGGCGAAACAGCGACG
GGACAAGTGTGAGCTCCCGAGGAGGAGACTCTACCCGCGGGGAGGAGAAC
ATCGAGGATGACCTTGAGGGCCACGACTTGGTTCGCCGAGCGGTGGCGGC
TGCTTCTGCTGCCGGGGGTGGCAACGGCGGTGCCACCACCACTCCGTCAG
CGAAGAAGCGCACGAGGCCGTCGAGATGGGGAGACAAGATCAACCAATCC
CAGGAAGGAGCAGCGGCGGCAACAGCAAAGAGTGACGGGGGCAGTGGCAG
TAGTGGTGTCGCGACAGGGTCAGGCGGTGCGGTGGGTGACGAGGCGGCGA
GGCAAGCGTGGGCGGGGGAGCTGGAGAGGGATAGGACCGCGGAGGACGAC
ATGGATGACTACCTCTCTTCCCTGCTCTTGTGACAGTGCCAACAAGGAGA
AGGAGAAGGAGAAGAAGAACAAGAAGAAGGCGATGGGGCTGGGGATGGGG
CTCGGGGGGACGGTAAGAGCACCGGAAAGAGGCGAAACAGCGACGGGACA
AGTGTGAGCTCCCGAGGAGGAGACTCTACCCGCGGGGAGGAGAACATCGA
GGATGACCTTGAGGGCCACGACTTGGTTCGCCGAGCGGTGGCGGCTGCTT
CTGCTGCCGGGGGTGGCAACGGCGGTGCCACCACCACTCCGTCAGCGAAG
AAGCGCACGAGGCCGTCGAGATGGGGAGACAAGATCAACCAATCCCAGGA
AGGAGCAGCGGCGGCAACAGCAAAGAGTGACGGGGGCAGTGGCAGTAGTG
GTGTCGCGACAGGGTCAGGCGGTGCGGTGGGTGACGAGGCGGCGAGGCAA
GCGTGGGCGGGGGAGCTGGAGAGGGATAGGACCGCGGAGGACGACATGGA
TGACTACCTCTCTTCCCTGCTCTTGTGA
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