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Homology
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 5.470e-139 Identity = 282/583 (48.37%), Postives = 321/583 (55.06%), Query Frame = 2
Query: 617 DGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIPLSLGSGIADSRRD-RTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 2347
DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCG KVG KG+NR+IPLF+ NLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR G + A++QGS ++ G P + +S GAGP G+ + SS+ + P P SG A + +T P+ G D G+ S G AA GS G AA V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct: 41 DGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGTKVGAKGTNRIIPLFLHNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLDQGGAGVVSSIV----------------------------------------------------------------------------------------------------------ARSQGSVST-----PGCPKPKRTLSQL-----ATPGGAGP-GVSSVAYSSS--------------VDIGSNSFMTPCPKISHSGPAVAYPQFKTPPPRRPI--GNLDVGAGGGSGGW---GLAATES---------GSEG--------------AAVGSTVAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQVRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTAPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 464
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE) HSP 1 Score: 435 bits (1118), Expect = 1.100e-137 Identity = 278/585 (47.52%), Postives = 322/585 (55.04%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIP-LSLGSGIADSRRDRTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 2347
++DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCGAKVG KG+NR+IPLF+QNLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR G + A++Q S ++ G P + +S + G G+ + SS+ + P P +S A R +T P+ G D G+ S GR + + S GST V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct: 114 EADGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGAKVGAKGTNRIIPLFLQNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLNQGGAGVVSSSV----------------------------------------------------------------------------------------------------------ARSQESVST-----PGCPKPIRTLSQ------FATPGRAGPGVSSVAYSSS--------------VDIGSSSFMTPCPKISHPGPAAAYSRFKTPPPRRPI--GNLDVGAGGGSG-----GRGLAATESGSEGAAAGST---------------------VAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQLRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTTPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 539
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A851UBM4_9PASS (RFWD3 ligase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A851UBM4_9PASS) HSP 1 Score: 99.0 bits (245), Expect = 1.270e-17 Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G+HR+C L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+E+ LR+Q E E + ++ L D+ S+
Sbjct: 253 EEEGDTCAICFEQWTNAGEHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 364
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A267GDQ9_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GDQ9_9PLAT) HSP 1 Score: 96.3 bits (238), Expect = 1.680e-17 Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 623 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 955
E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC + V+PL+V NL A D E E + +++ KR + E E + + L+D+ LSRQ
Sbjct: 245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: UPI00193A6C01 (E3 ubiquitin-protein ligase RFWD3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6C01) HSP 1 Score: 97.8 bits (242), Expect = 2.310e-17 Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIE 922
+ DG+ C IC + W++ GKHR+ +L CGHLFG+SCIERW+K + CPQC K K RV L+ + L A DT EL A T E EK+LR+ E E ++ ++
Sbjct: 159 EEDGDCCPICFEHWSNSGKHRLSSLKCGHLFGQSCIERWMKGAKKCPQCNTKA-RKADIRV--LYAKKLTAVDTTELTEATTAFEHEKKLRRNKEMELAKVQMQ 259
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A7K5DY35_POLCE (RFWD3 ligase (Fragment) n=1 Tax=Polioptila caerulea TaxID=66707 RepID=A0A7K5DY35_POLCE) HSP 1 Score: 97.4 bits (241), Expect = 3.890e-17 Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+C L CGHLFG +CIERWLK + CPQC K K S+ VI L+ + L A DT E E ++ LE+E+ LR+Q E E + ++ L D+ S+
Sbjct: 259 EEEGDTCAICFEQWTNAGDHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMKSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 370
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A1I8IIU3_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IIU3_9PLAT) HSP 1 Score: 96.3 bits (238), Expect = 4.970e-17 Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 623 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 955
E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC + V+PL+V NL A D E E + +++ KR + E E + + L+D+ LSRQ
Sbjct: 245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A851CAX2_CALVR (RFWD3 ligase (Fragment) n=1 Tax=Calyptomena viridis TaxID=135972 RepID=A0A851CAX2_CALVR) HSP 1 Score: 95.1 bits (235), Expect = 6.780e-17 Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+ L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+E++LR+Q E E + ++ L D+ S+
Sbjct: 256 EEEGDTCTICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQEHMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 367
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A7R5KIL2_9PASS (E3 ubiquitin-protein ligase RFWD3 isoform X1 n=4 Tax=Pipridae TaxID=114313 RepID=A0A7R5KIL2_9PASS) HSP 1 Score: 96.7 bits (239), Expect = 7.030e-17 Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G+HR+ L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+EK LR+Q E E + ++ L D+ S+
Sbjct: 286 EEEGDTCAICFEQWTNAGEHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEKMLRRQAELESAQSRLQLQVLTDECSK 397
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match: A0A8D2NUR9_ZOSLA (Ring finger and WD repeat domain 3 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8D2NUR9_ZOSLA) HSP 1 Score: 95.9 bits (237), Expect = 7.200e-17 Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+ L CGHLFG +CIERWLK + CPQC K K S+ VI L+ + L A DT E E R+ LE+E++LR+Q E E + ++ L D+ S+
Sbjct: 63 EEEGDTCAICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 174
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 439.5 |
| Seed ortholog evalue | 2.9e-120 |
| Seed eggNOG ortholog | 2880.D8LKW0 |
| KEGG ko | ko:K15691 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020 |
| EggNOG free text desc. | MDM2/MDM4 family protein binding |
| EggNOG OGs | KOG1645@1,KOG1645@2759 |
| Ec32 ortholog description | WD40/YVTN repeat-like-containing domain |
| Ec32 ortholog | Ec-11_005750.1 |
| EC | 2.3.2.27 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko04121 |
| Exons | 8 |
| Model size | 2351 |
| Cds size | 2070 |
| Stop | 0 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930834.9400432-UTR-C-linearis_contig97:366542..366822 | 1622930834.9400432-UTR-C-linearis_contig97:366542..366822 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 366543..366822 + |
| 1690881274.049366-UTR-C-linearis_contig97:366542..366822 | 1690881274.049366-UTR-C-linearis_contig97:366542..366822 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 366543..366822 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930834.9578178-CDS-C-linearis_contig97:366822..367158 | 1622930834.9578178-CDS-C-linearis_contig97:366822..367158 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 366823..367158 + |
| 1690881274.065516-CDS-C-linearis_contig97:366822..367158 | 1690881274.065516-CDS-C-linearis_contig97:366822..367158 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 366823..367158 + |
| 1622930834.9800966-CDS-C-linearis_contig97:367438..367494 | 1622930834.9800966-CDS-C-linearis_contig97:367438..367494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 367439..367494 + |
| 1690881274.0794296-CDS-C-linearis_contig97:367438..367494 | 1690881274.0794296-CDS-C-linearis_contig97:367438..367494 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 367439..367494 + |
| 1622930835.0006514-CDS-C-linearis_contig97:367836..367897 | 1622930835.0006514-CDS-C-linearis_contig97:367836..367897 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 367837..367897 + |
| 1690881274.0901144-CDS-C-linearis_contig97:367836..367897 | 1690881274.0901144-CDS-C-linearis_contig97:367836..367897 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 367837..367897 + |
| 1622930835.0241387-CDS-C-linearis_contig97:368317..368473 | 1622930835.0241387-CDS-C-linearis_contig97:368317..368473 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 368318..368473 + |
| 1690881274.0998735-CDS-C-linearis_contig97:368317..368473 | 1690881274.0998735-CDS-C-linearis_contig97:368317..368473 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 368318..368473 + |
| 1622930835.0459113-CDS-C-linearis_contig97:368846..369881 | 1622930835.0459113-CDS-C-linearis_contig97:368846..369881 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 368847..369881 + |
| 1690881274.1101754-CDS-C-linearis_contig97:368846..369881 | 1690881274.1101754-CDS-C-linearis_contig97:368846..369881 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 368847..369881 + |
| 1622930835.0685241-CDS-C-linearis_contig97:370638..370770 | 1622930835.0685241-CDS-C-linearis_contig97:370638..370770 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 370639..370770 + |
| 1690881274.1205645-CDS-C-linearis_contig97:370638..370770 | 1690881274.1205645-CDS-C-linearis_contig97:370638..370770 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 370639..370770 + |
| 1622930835.0877233-CDS-C-linearis_contig97:371201..371294 | 1622930835.0877233-CDS-C-linearis_contig97:371201..371294 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 371202..371294 + |
| 1690881274.1301334-CDS-C-linearis_contig97:371201..371294 | 1690881274.1301334-CDS-C-linearis_contig97:371201..371294 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 371202..371294 + |
| 1622930835.1096601-CDS-C-linearis_contig97:371608..371809 | 1622930835.1096601-CDS-C-linearis_contig97:371608..371809 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 371609..371809 + |
| 1690881274.1390064-CDS-C-linearis_contig97:371608..371809 | 1690881274.1390064-CDS-C-linearis_contig97:371608..371809 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 371609..371809 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17098.1 >prot_C-linearis_contig97.17098.1 ID=prot_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=690bp
MVSSPSSVIDLTCRGREGEAAATDRAPAADVHTDMAAASGAITGTPRQAP REEVSAAEEESSMVRGVGPLRDSTNTSAAALASDGDDADAAGSAPVRRKK RKAQAPPPPPKSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWL KERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRL RKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNPNPAGGGGGGHGGGY RFKPARVAYASTPSTCTTAMLGAGPGVGSPSVVAAYPAFAQTQRQRQGQG AGPPLPVSSPSPGHFTAPGGTGTMSSPSPSPSWRTRFRRRQDPAQAQGSP TSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSNSTE APRQTSSPRQTQGQTQSLPIPLSLGSGIADSRRDRTAEILLPMSFGPRDA GSASASARAASPGRAAHSHHNPSPRDFRGSTGGGCGSGGGSTAKAAAASV RRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWPQHGITKFS LADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDT VIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVR KLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTKG back to topmRNA from alignment at C-linearis_contig97:366543..371809+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig97.17098.1 ID=mRNA_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5267bp|location=Sequence derived from alignment at C-linearis_contig97:366543..371809+ (Chordaria linearis ClinC8C monoicous) CAGCGCCAAGGAGAGAGACGAGAAGCGGGGAGGGTGAGAGCCCGGCTGCT
GCGTGAGAGACCAGTCGCCTGGACTTCTATAGTTGTGGGCGAGTTTTTCG
AGCACTTCTCAGTTGCTCTACGGCAGCGCCCGTTGTCCTTTTCTTTCCTC
CTGCGCTGGAGCGGAGATACGTCAGGCGGGCAGTAGGGAGCAGGCGGAGG
CGGCGTCGGTTGCACAGCTTGGGTGCGGGGGAATTACCAGGAGAAATCGT
GGAAACCGTGGCGTATGAGCCTTTCCCGCGATGGTATCATCACCATCAAG
TGTCATTGATCTCACCTGTCGAGGTCGAGAGGGGGAGGCTGCAGCAACAG
ACAGAGCACCGGCTGCTGATGTGCACACGGACATGGCTGCTGCCTCAGGG
GCCATCACAGGAACACCACGACAAGCACCACGAGAGGAAGTTTCAGCAGC
AGAAGAGGAATCCTCAATGGTTAGAGGGGTTGGACCTTTGCGTGATTCAA
CCAACACGAGCGCAGCAGCGTTGGCAAGTGACGGAGATGATGCGGATGCT
GCTGGTTCTGCGCCCGTGAGGAGGAAAAAGCGCAAGGCACAGGCACCACC
ACCACCCCCCAAGTCGGTGAGAGCTCGCGGTTCTTAGTTCATTCATGTGC
TTTACACCAGGTCAGCTAGTAGGGCCGGGTGGAACCAAGAGTATTTTCAA
AGGGTGCAGGGCATCATTCTGATGCATGAGTGCACCAAGCGTCGGGCGAT
GCGGCTGGGTAGTTGGATGTTTGCCTGCGCTGGGTACCTGGGAGCAGTGG
GAGCAATGCTCCTATGCCCAGATCAACGTATTCCCCCACGAAGTTGACCG
GGAGCCTGTTATCTTGCGGCCTTTCTCTGCGCTTGCCCTCCAACAGGATG
GCGAGCGGTGCAGCATCTGCCTAGATGAGTGGACGTCGAAAGGCAAACAC
AGGTGCATGCCAGACCTACTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCT
ACATCCGCTGCCTCTTGACTGGGGATGTGCAGTGTGCAGTCAGCCCCTCC
TTTAGTGGGGACGTAAAACATTCCCCCAGTGATGTGAAGGTTTAAACCCT
GCTGAAAACTTGACAACACTGCTATCTGTGGCATCCTCATCCTCCTCTTG
CGTGTATGCCACGAGTTTTGTGATAAACGCCTGCGGAGCGTGTGTTTAGT
ACTGGGTACAACTGCTGTGGGGGAGAGTCTTGAGCGCCTTTCCAAGAACA
ACCTCCTGCTCCCCTCGCTCTCTTTCTGTTTTATTTTCGTTCAGGATTTG
CACCCTCCTCTGCGGACACTTGTTCGGGAAGTCTTGCATCGAGAGATGGC
TGAAAGTGAGTTGAAAAAGTCGAATTGGTTGTGCCAGCCGGCCCTTGGCG
GCTTGGATGCCACCCTAGGCCATGTGGCATTTTCCTTCAACTGCATGGGT
CTCTCTCTTTCGACAGATTTCGCGCCTCAATCGGCAAAGCGTCAACACCG
GGCGGCCGCTCCGATCGAGTGGGGTTCGGAACTCTTGAGTCCGTGTTTGC
ATTAAGTATCCATCCTTGGATAAGGTTTATGGTTTCGGCGTTGGTCGTTG
CCGCGCGCGAAGCAGCAAACGCCGAACCATCAAGACATTAAGAGACACCC
GGGAGTTGACCCTCAAGCACGCCTTGGGGCCCTTTTTTTTATCCACTGCA
CTAAAGGATTGTGTCCATGAATATGCGGCTCTGCTTTTATGGGCTTTTTC
CACCTTGAAATGGATGTGTTTACAGGAGAGGCGCAGCTGCCCCCAGTGCG
GCGCGAAGGTGGGAACGAAGGGCAGCAACCGGGTCATCCCTCTCTTCGTG
CAGAACCTGGTTGCGAAGGACACGGGCGAGCTGGAAACCGCTCGGACGTG
CCTGGAAGAAGAGAAGCGCCTCCGGAAACAGGTGTGGGGTGACATAGATC
TCTCTGACTCATCTATCTGTCCTTGTCTGCCTGTTTGTCAGGTGGGGCCG
CTTTTTTGCGCGTGATCGAACGCAGGAAGACAACAGGAAATCTTGTCTTG
GAGTATATTTACTTTTCTGGGGTCATACATCAACCCAGTTTTGTGTGCAG
GCTTCACAGCAGTTGTTGAGATTCCGTTGCCGAATGTTTATTCAAAACGT
GTTCGTTGTTGAGCCTAAATATGTAACGCATTGTTGGTGGCTCAGCTTTT
TCCCTCGCTCTTGAATCGGAGGGGGCTACCCCTGCCTGCTATATCACCAG
CCGCATGCCTGCTCGTGTTTGTATTGGTGTCGCCCCCCGTGATGCCCGGA
CCAGTGCGAAGCGGAGAGAGTGCGGTTGTCGATCGAAAACGCGAGCTTGA
AGGACCAACTCTCGCGCCAGGGCATGAGCACCATGGGGAAGACCCCGAAC
CCCAACCCGGCCGGTGGTGGTGGCGGTGGCCACGGCGGCGGCTATCGGTT
CAAACCCGCTCGGGTGGCGTATGCTTCAACGCCAAGCACTTGCACTACTG
CGATGCTCGGTGCTGGTCCTGGGGTAGGTTCTCCTTCTGTGGTCGCGGCC
TACCCTGCTTTCGCGCAAACCCAAAGGCAAAGGCAGGGGCAAGGAGCAGG
GCCGCCGTTGCCGGTGTCATCGCCGTCACCGGGACATTTCACGGCGCCAG
GAGGAACAGGAACGATGTCCTCGCCTTCGCCTTCGCCTTCATGGCGCACA
AGGTTTAGACGGAGACAAGATCCGGCACAAGCACAAGGTTCACCGACTTC
AGGGTCGGGAGGTTTGACGGGCGCTACCCCGCCCGGACAGCCGATCTCAT
CGACGCAGGGTGGCATCCCTTTGTTGTCATCAGGAGCAGGGCCCACCGGA
CTTTGCGACCACAGCAGCAGCAGCAACAACAGCAATAGCACCGAAGCACC
GAGACAAACGTCATCACCAAGGCAGACGCAAGGGCAAACTCAAAGCCTAC
CGATTCCTCTGTCCCTAGGGTCCGGAATCGCAGACAGCAGGAGGGACAGG
ACCGCCGAGATCTTGTTGCCGATGTCGTTTGGACCAAGGGACGCGGGAAG
CGCTAGTGCTAGTGCTCGCGCTGCTTCTCCGGGCCGGGCGGCACACTCGC
ACCACAATCCGTCGCCGAGAGATTTCCGTGGCAGCACCGGCGGCGGCTGC
GGTAGTGGAGGAGGGAGTACGGCGAAAGCGGCGGCGGCATCAGTCAGGAG
GGTTACCGTGCGAAGCGAGCACCTGCTGTCGAGGAACGTGCAGGCGGGGA
GAGTGGTGGCGTTTGCCGGGGGAGCGGCGGGGGCGTTGCTAGTCTCGCAG
GAGTTTGGGGAGCGGTGGCCGCAGCACGGAATCACGAAGGTGGGGTGGGG
TGGGCATGCCTCTCTAGTCTCTCTTGTCTCTCTTGTGACCGTTACGATAG
CGGGCTAGGTTCTGCGTACGCACGGAAATAGTTGTTTCTGGCTCGGTGTT
TTGCTGTACCCAGGCACAGAAAATGTTCCAACGTACAGGTCCTGACAAAC
GATGGATCGAAATGATGGCAACCACGACTTGTTTGTTTTTTTTCGTTTGT
TTGTACTTGTTTTGTGCTATTGTTTCTTCTTCTCGCTCTCCCGTCCGTTA
AGATTGTTGCTTTTCATGCACCACTCACTCACGAGAGTGCCATGCTCACA
CAGACACCAAGCTTCTATATTCCAACGGCGATGCTGTTGTCGCGCAGTTG
GCCCCTCCTTTTCGCCGTTTACCCCCAAACGACCTCGACAACTAGGCGCC
TTGACCAATCAACGCACGGCGTGCTGCCGGTCAATGTATTTCAATCGTAA
CACATCCGCTGTTGGGTTCGACGTTCATGCATCTCTTCAAAGCGTGAGAC
GCGCTCCGACTTCTCGGCAGGATCGTACTCTCACGTTTCCGCAGGATCTA
GCGCCGTTTTTGGCCCAAATTTAAGCGTTGGACGCGCTGGTCCAGCTGTC
GTGAGACAAATTCCTCGGTGACGCCACAGCGTTTATATTTAACACCAACA
TCGCATGTGCAAATGATTAATCGAAAATATGAATATTTTCCGCTCCCGCC
ATCCTATCTTGCAACGACCTCCCTCTTGCCACGGCATGTGCACCAGTTTA
GCCTCGCGGATCTCCGGCACCACAAGAATATTCACCTGCACCGAGAGCAG
ATCAGAGATATCAAGTTCTCCGTTGAGGGTGGCAACGTGAGCTACATCCT
TAGCACGGGCTTCGACAAGACCTTGAAGGTGAGAGAAAGGATGAAAATAA
TGGCTTTGGGAGAGTGGTGAGACGCTTCTTCCCCTTAGCACACACATTCG
CCTACTCGTCTCCCAAGTTTTTTTCAAACCTCGCACGTTTTCGAGTAAAA
TCAGGCACCACTCTTTACCGCTATCATTTTCCATCCCAAAGTTTCGGGGG
AGGGGGAACAACGACGCATCTGACTGACGTCACCTCGGCGGGACTGACGT
CACCTCGGCGGGCCCAAATGTCGGTCCGTCCCATGCATGCGGAATTTCCT
TGGAACATAAACCATGAAAGTATCGAAAATCACTTATAGTATGTGACAAA
AGTTGTGTGTGCGCCTGTGTTGTAACGGTAGCAATTTACGATGGTGCCTG
TTGCTGATACCGATTGCTTGCCGCTGACCCTACCCTACCCTACCCTACCC
TACTGCCAGGTGTGTGATCTCCGAACGGACACCGTGATTGTGTCATACGA
CCTGGAGGGGAATGGATGGTCTTGCCAATGGAGCGCCACGAACCCCACCC
AGGTACTTGTAGAATACTGTTTATCTTGCCGTCGAAACGGGGTCTCACTT
GCTAGTTGGACAGTTTTGTGACTGTCGCATTGTAGTCACGTCGGTACACA
CGGTGCACACTCTCGTGTTGCCGGTGTTGCCGTTGTCGGTGTTATGTCAA
ACATGGAAATGTCCATTCTCCGACTCGGACCTTTTTAGAGGAATCGCAGA
CATTGTTGCCTTTCGTCTCTTGTTCCGAACGCCAGCCGGTACACAAGCTC
GTTCATCTACGTTCTGATTTGATCGTGGGATGTTTTTTTTCAATTTTTTG
TGTCTGATTGCTTCAGATGTTCTGTGGCGTGGTGGATGAGGCTAGGGTAT
CAGCCGTTCAGCTGTTCGACCTTCGCTCCACCGCCGGGGCCGTTCGCAAG
CTGCGCGCCACGGCGAGGCAAAGGCAGCCCATCCACAGCATCTGCCACAC
CGCAGATGATCTACTTCTATGCGCTGCTATGGGAGGCGTTTGGGCTTGGG
GGGGCGGTACGAAGGGT back to topCoding sequence (CDS) from alignment at C-linearis_contig97:366543..371809+ >mRNA_C-linearis_contig97.17098.1 ID=mRNA_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4140bp|location=Sequence derived from alignment at C-linearis_contig97:366543..371809+ (Chordaria linearis ClinC8C monoicous) ATGGTATCATCACCATCAAGTGTCATTGATCTCACCTGTCGAGGTCGAGA GGGGGAGGCTGCAGCAACAGACAGAGCACCGGCTGCTGATGTGCACACGG ACATGGCTGCTGCCTCAGGGGCCATCACAGGAACACCACGACAAGCACCA CGAGAGGAAGTTTCAGCAGCAGAAGAGGAATCCTCAATGGTTAGAGGGGT TGGACCTTTGCGTGATTCAACCAACACGAGCGCAGCAGCGTTGGCAAGTG ACGGAGATGATGCGGATGCTGCTGGTTCTGCGCCCGTGAGGAGGAAAAAG CGCAAGGCACAGGCACCACCACCACCCCCCAAGTCGATGGTATCATCACC ATCAAGTGTCATTGATCTCACCTGTCGAGGTCGAGAGGGGGAGGCTGCAG CAACAGACAGAGCACCGGCTGCTGATGTGCACACGGACATGGCTGCTGCC TCAGGGGCCATCACAGGAACACCACGACAAGCACCACGAGAGGAAGTTTC AGCAGCAGAAGAGGAATCCTCAATGGTTAGAGGGGTTGGACCTTTGCGTG ATTCAACCAACACGAGCGCAGCAGCGTTGGCAAGTGACGGAGATGATGCG GATGCTGCTGGTTCTGCGCCCGTGAGGAGGAAAAAGCGCAAGGCACAGGC ACCACCACCACCCCCCAAGTCGGATGGCGAGCGGTGCAGCATCTGCCTAG ATGAGTGGACGTCGAAAGGCAAACACAGGATGGCGAGCGGTGCAGCATCT GCCTAGATGAGTGGACGTCGAAAGGCAAACACAGGATTTGCACCCTCCTC TGCGGACACTTGTTCGGGAAGTCTTGCATCGAGAGATGGCTGAAAGATTT GCACCCTCCTCTGCGGACACTTGTTCGGGAAGTCTTGCATCGAGAGATGG CTGAAAGAGAGGCGCAGCTGCCCCCAGTGCGGCGCGAAGGTGGGAACGAA GGGCAGCAACCGGGTCATCCCTCTCTTCGTGCAGAACCTGGTTGCGAAGG ACACGGGCGAGCTGGAAACCGCTCGGACGTGCCTGGAAGAAGAGAAGCGC CTCCGGAAACAGGAGAGGCGCAGCTGCCCCCAGTGCGGCGCGAAGGTGGG AACGAAGGGCAGCAACCGGGTCATCCCTCTCTTCGTGCAGAACCTGGTTG CGAAGGACACGGGCGAGCTGGAAACCGCTCGGACGTGCCTGGAAGAAGAG AAGCGCCTCCGGAAACAGTGCGAAGCGGAGAGAGTGCGGTTGTCGATCGA AAACGCGAGCTTGAAGGACCAACTCTCGCGCCAGGGCATGAGCACCATGG GGAAGACCCCGAACCCCAACCCGGCCGGTGGTGGTGGCGGTGGCCACGGC GGCGGCTATCGGTTCAAACCCGCTCGGGTGGCGTATGCTTCAACGCCAAG CACTTGCACTACTGCGATGCTCGGTGCTGGTCCTGGGGTAGGTTCTCCTT CTGTGGTCGCGGCCTACCCTGCTTTCGCGCAAACCCAAAGGCAAAGGCAG GGGCAAGGAGCAGGGCCGCCGTTGCCGGTGTCATCGCCGTCACCGGGACA TTTCACGGCGCCAGGAGGAACAGGAACGATGTCCTCGCCTTCGCCTTCGC CTTCATGGCGCACAAGGTTTAGACGGAGACAAGATCCGGCACAAGCACAA GGTTCACCGACTTCAGGGTCGGGAGGTTTGACGGGCGCTACCCCGCCCGG ACAGCCGATCTCATCGACGCAGGGTGGCATCCCTTTGTTGTCATCAGGAG CAGGGCCCACCGGACTTTGCGACCACAGCAGCAGCAGCAACAACAGCAAT AGCACCGAAGCACCGAGACAAACGTCATCACCAAGGCAGACGCAAGGGCA AACTCAAAGCCTACCGATTCCTCTGTCCCTAGGGTCCGGAATCGCAGACA GCAGGAGGGACAGGACCGCCGAGATCTTGTTGCCGATGTCGTTTGGACCA AGGGACGCGGGAAGCGCTAGTGCTAGTGCTCGCGCTGCTTCTCCGGGCCG GGCGGCACACTCGCACCACAATCCGTCGCCGAGAGATTTCCGTGGCAGCA CCGGCGGCGGCTGCGGTAGTGGAGGAGGGAGTACGGCGAAAGCGGCGGCG GCATCAGTCAGGAGGGTTACCGTGCGAAGCGAGCACCTGCTGTCGAGGAA CGTGCAGGCGGGGAGAGTGGTGGCGTTTGCCGGGGGAGCGGCGGGGGCGT TGCTAGTCTCGCAGGAGTTTGGGGAGCGGTGGCCGCAGCACGGAATCACG AAGTGCGAAGCGGAGAGAGTGCGGTTGTCGATCGAAAACGCGAGCTTGAA GGACCAACTCTCGCGCCAGGGCATGAGCACCATGGGGAAGACCCCGAACC CCAACCCGGCCGGTGGTGGTGGCGGTGGCCACGGCGGCGGCTATCGGTTC AAACCCGCTCGGGTGGCGTATGCTTCAACGCCAAGCACTTGCACTACTGC GATGCTCGGTGCTGGTCCTGGGGTAGGTTCTCCTTCTGTGGTCGCGGCCT ACCCTGCTTTCGCGCAAACCCAAAGGCAAAGGCAGGGGCAAGGAGCAGGG CCGCCGTTGCCGGTGTCATCGCCGTCACCGGGACATTTCACGGCGCCAGG AGGAACAGGAACGATGTCCTCGCCTTCGCCTTCGCCTTCATGGCGCACAA GGTTTAGACGGAGACAAGATCCGGCACAAGCACAAGGTTCACCGACTTCA GGGTCGGGAGGTTTGACGGGCGCTACCCCGCCCGGACAGCCGATCTCATC GACGCAGGGTGGCATCCCTTTGTTGTCATCAGGAGCAGGGCCCACCGGAC TTTGCGACCACAGCAGCAGCAGCAACAACAGCAATAGCACCGAAGCACCG AGACAAACGTCATCACCAAGGCAGACGCAAGGGCAAACTCAAAGCCTACC GATTCCTCTGTCCCTAGGGTCCGGAATCGCAGACAGCAGGAGGGACAGGA CCGCCGAGATCTTGTTGCCGATGTCGTTTGGACCAAGGGACGCGGGAAGC GCTAGTGCTAGTGCTCGCGCTGCTTCTCCGGGCCGGGCGGCACACTCGCA CCACAATCCGTCGCCGAGAGATTTCCGTGGCAGCACCGGCGGCGGCTGCG GTAGTGGAGGAGGGAGTACGGCGAAAGCGGCGGCGGCATCAGTCAGGAGG GTTACCGTGCGAAGCGAGCACCTGCTGTCGAGGAACGTGCAGGCGGGGAG AGTGGTGGCGTTTGCCGGGGGAGCGGCGGGGGCGTTGCTAGTCTCGCAGG AGTTTGGGGAGCGGTGGCCGCAGCACGGAATCACGAAGTTTAGCCTCGCG GATCTCCGGCACCACAAGAATATTCACCTGCACCGAGAGCAGATCAGAGA TATCAAGTTCTCCGTTGAGGGTGGCAACGTGAGCTACATCCTTAGCACGG GCTTCGACAAGACCTTGAAGTTTAGCCTCGCGGATCTCCGGCACCACAAG AATATTCACCTGCACCGAGAGCAGATCAGAGATATCAAGTTCTCCGTTGA GGGTGGCAACGTGAGCTACATCCTTAGCACGGGCTTCGACAAGACCTTGA AGGTGTGTGATCTCCGAACGGACACCGTGATTGTGTCATACGACCTGGAG GGGAATGGATGGTCTTGCCAATGGAGCGCCACGAACCCCACCCAGGTGTG TGATCTCCGAACGGACACCGTGATTGTGTCATACGACCTGGAGGGGAATG GATGGTCTTGCCAATGGAGCGCCACGAACCCCACCCAGATGTTCTGTGGC GTGGTGGATGAGGCTAGGGTATCAGCCGTTCAGCTGTTCGACCTTCGCTC CACCGCCGGGGCCGTTCGCAAGCTGCGCGCCACGGCGAGGCAAAGGCAGC CCATCCACAGCATCTGCCACACCGCAGATGATCTACTTCTATGCGCTGCT ATGGGAGGCGTTTGGGCTTGGGGGGGCGGTACGAAGGGTATGTTCTGTGG CGTGGTGGATGAGGCTAGGGTATCAGCCGTTCAGCTGTTCGACCTTCGCT CCACCGCCGGGGCCGTTCGCAAGCTGCGCGCCACGGCGAGGCAAAGGCAG CCCATCCACAGCATCTGCCACACCGCAGATGATCTACTTCTATGCGCTGC TATGGGAGGCGTTTGGGCTTGGGGGGGCGGTACGAAGGGT back to top
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