mRNA_C-linearis_contig97.17096.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17096.1
Unique NamemRNA_C-linearis_contig97.17096.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: D7G2Q6_ECTSI (V-type proton ATPase subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q6_ECTSI)

HSP 1 Score: 751 bits (1940), Expect = 4.550e-267
Identity = 380/436 (87.16%), Postives = 406/436 (93.12%), Query Frame = 1
Query:   34 MSGTSYTLVSLPNEKQPTDQVLRKLKESPLKTYADIFKVEVPPLQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVSQLSSGPVTAAGXXXXXX-EDEDTAYVSDNFSIAS 1338
            MSGT+YTLVSLPNE+QP DQV  KLK S +KTYADIFKVEVP LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQY+EVAGE  ETLKVAGVS GQYVR+FEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVF+EKNQ++QALKRKKGNNLATVELSEVLS EQLRG+MMVDTENL+TLAVAM K QEKDWL+GYESIGS+IASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGS+QKVLEEG+QVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYV EFKRKCKEKRF ARDF+FNPER G+NQR+EEQLK EVQQLHAGMIRWCRAHFGEAFSAWMHVKL+KSYVESVMRYGLPVDFSAF+LA KKGQ AKVK+ L ++YAHVSQLSSGP+TA G       +D+DTAYVSD FSI +
Sbjct:    1 MSGTTYTLVSLPNEQQPPDQVFGKLKGSAVKTYADIFKVEVPALQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYMEVAGEASETLKVAGVSPGQYVRMFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFAEKNQAMQALKRKKGNNLATVELSEVLSSEQLRGVMMVDTENLVTLAVAMGKPQEKDWLEGYESIGSEIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSTQKVLEEGEQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVAEFKRKCKEKRFTARDFIFNPERTGENQRVEEQLKTEVQQLHAGMIRWCRAHFGEAFSAWMHVKLVKSYVESVMRYGLPVDFSAFVLATKKGQEAKVKEALSALYAHVSQLSSGPITAGGGEDDGDKDDDDTAYVSDKFSIVA 436          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A835Z1N8_9STRA (V-type proton ATPase subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N8_9STRA)

HSP 1 Score: 477 bits (1227), Expect = 4.230e-159
Identity = 245/438 (55.94%), Postives = 323/438 (73.74%), Query Frame = 1
Query:   28 GAMSGTSYTLVSLPNEKQPTDQVLRKLKESPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVSQLSSGPVTAAGXXXXXXEDEDTAYVSDNFSIAS 1338
            G   G++Y L+++P+E +P D V RK+KE+ L   A+++KVE+P  L VGTLD+LM LSD+LVR+D +VEN+VRKIEKQY +VAG   E L+V  ++  +YVR  EWD++K+AVRQ LPALV  IQ ++GKIEEE R+L+  ++EK Q+ QALKRKK  NL T +LSEVL+ ++LR I +V+T++L TL VA++K QE  WLD Y  IG+DIA++GSPDWS P+    LG+ +GQ GP FS R   KGSPV+PGS+ K++E+GD  LYTVTVL+GQYQAGF DGEQFQ GM  DYV  FK+  KEKRF A+DF F+PERAG+ +R   QLKLE QQLHAGM+RWC+AHFGEA  AWMH+KLI+ +VESV+RYGLPVDFS  ++   KG+ A V   L  +YA+V+ L  GP           +DE  A+V++ F++ S
Sbjct:    8 GGPGGSTYELITVPHEGKPADTVCRKVKET-LAGVAEVYKVELPGGLMVGTLDTLMSLSDELVRVDGMVENVVRKIEKQYADVAGRDAEPLRVGALAPDRYVRQLEWDFAKYAVRQPLPALVGTIQSTMGKIEEELRSLTGTYTEKTQAAQALKRKKQANLMTADLSEVLTEDKLRHITLVETDHLTTLIVAVNKNQESAWLDTYHQIGADIAAMGSPDWSAPANRAQLGSINGQHGPEFSQRTATKGSPVIPGSTVKIMEDGDACLYTVTVLKGQYQAGFFDGEQFQPGMQVDYVDAFKKAAKEKRFTAKDFKFDPERAGELEREANQLKLEAQQLHAGMLRWCKAHFGEAMIAWMHIKLIRGFVESVLRYGLPVDFSTLLVECAKGKEAAVTKALDGLYANVAAL--GPQHTPHKDDKEDKDEYHAFVANAFALLS 442          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A6V1R0R9_HETAK (V-type proton ATPase subunit C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R0R9_HETAK)

HSP 1 Score: 343 bits (880), Expect = 3.290e-107
Identity = 186/442 (42.08%), Postives = 276/442 (62.44%), Query Frame = 1
Query:   34 MSGTSYTLVSLPNEKQPTDQVLRKLKESPLKT---YADIFKVEVPPLQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAG-ETP-ETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE--QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVS--QLSSGPVTAAGXXXXXXEDEDTAYVSDNFSI 1332
            M+ + Y L + PNE +   Q   ++ E+   +   Y  I + ++P L VGTLDSL+ LSDDL ++DM  E  VRKIE+Q+ E++  ++P E L ++G S   Y++ F WD++++  R+ LP LV  IQ SVG+++EE +NL+  ++EK Q  QAL+RKKG NL   +L++VL+ E+L G+   DTE+L T+ V ++K  ++++ +GYE +G++I + G PDW++  VA  LG  DG FGP  S+R   +GSPVVPGS+Q VL EGD +LY +TVL+G Y+AGF D    +FQ G   +Y  E     K  +F  R F F+P+ AG   R   QL  EV QLH+G+ RWCRAH+ EA  AW+H+K+I+++VES++RYGLP +F A +L P+     +++  L  M+AHV    L  G V A        E     +V   F +
Sbjct:    1 MANSRYWLATFPNEHRVESQTHAQIAEAVASSKHDYCTIHQFDMPALLVGTLDSLISLSDDLTKVDMACEQAVRKIERQFHEISPKDSPSEPLSMSGRSVEGYLQEFVWDFARYPHRRPLPELVGHIQTSVGQVDEELKNLAAAYTEKTQLRQALQRKKGGNLLVADLADVLTAERLEGVPFHDTEHLHTVVVVLNKQNQREFEEGYERLGAEIGAFGGPDWTDEKVAAGLGRDDGNFGP-ESARAARRGSPVVPGSAQLVLREGDYLLYAMTVLKGHYEAGFVDEATGEFQPGRRVEYFEELAAAAKNLKFTVRRFTFDPDAAGAGDRKARQLDYEVDQLHSGIGRWCRAHYPEALEAWVHLKVIRAFVESILRYGLPRNFCALVLRPRPRMEGRLERALQGMFAHVGGGALGGGAVAAVDEGEERLE----TFVCQKFQL 437          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A7S2LK85_9STRA (V-type proton ATPase subunit C n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK85_9STRA)

HSP 1 Score: 328 bits (841), Expect = 1.160e-101
Identity = 173/397 (43.58%), Postives = 260/397 (65.49%), Query Frame = 1
Query:   46 SYTLVSLPNEKQ----PTDQVLRKLKES---PLKTYADIFKVEVPPLQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTL 1215
            SY + ++PN++       +Q  RKL  +   P K +A++FK EVP L VGTLD+LMQLSDDLV+ D +VE++VRKIEK Y+E++ ++   LK+  V   +Y++ F WDY+K+  R+ L  LV+LI G    I+EE + L   F++K  +LQ  +RKKG NL TV+L+EVL+ + +R + + DTE L T+ +A+ K     +     S+GS++   G PDWS  S   +LG Q   FG     R + +GSPVVPGS  +V+E+GD  LYTVT+L+ QY+AG+++GE+FQ G + D+  EF + C++KR+  R F ++P +AG +     QLK E   + +G+ RW + H+GEAF AWMH+K+I+ +VES++RYGLP DF+A +     GQNA++ + L
Sbjct:    2 SYVIAAIPNKEGNDGLSPEQAYRKLHNAGACPSKPFAEMFKFEVPSLMVGTLDTLMQLSDDLVKTDAIVESIVRKIEKTYVEISRQSHTELKIGEVPTARYIQSFAWDYAKYPNRRPLKELVSLIAGGATAIDEELKQLCQSFADKQMALQEAQRKKGGNLMTVDLNEVLTEDIMRKVQVYDTEYLKTVFIAVPKNACASFETDVYSVGSNLVGYGGPDWSRDS--RNLG-QPTSFGSTV-DRHLKRGSPVVPGSLSEVMEDGDSALYTVTILKSQYEAGYYEGEEFQPGTTIDFEEEFMKACRDKRYMVRPFEYDPAQAGNSALQLTQLKTETDGMRSGLTRWSKTHYGEAFVAWMHIKVIRVFVESILRYGLPPDFTAVLYKVANGQNAELIEAL 394          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: K0TGY8_THAOC (V-type proton ATPase subunit C (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGY8_THAOC)

HSP 1 Score: 331 bits (849), Expect = 2.240e-100
Identity = 179/402 (44.53%), Postives = 265/402 (65.92%), Query Frame = 1
Query:   37 SGTSYTLVSLPNEKQPTDQVLRKLKES---PLKTYADIFKVEVPPLQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWS-NPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVGEFKRKCKEKRFNARD-FVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMY 1227
            SG+    +++ N  Q  +   R+L+ +   P   Y ++FK+EVP L VGTLDSLM LSDDL + D ++E++VRK+EK  +E+AG     L V GV +G+YV+ F WDY+KF  R+ L  LV+LI G V  I+EE + LS  + EK  +LQ  KRK+G NL T +L++VL  + +R + + DTE L TL VA+ +A  +++     ++GS++   G PDWS NP+    LG+ +  FG G    G  KGSPVVPGS +KV E+ + VL+ VTVL+G Y+AG+++G++F  G  TD VG+F R  +EKR++ R+ FV++P + G++    EQL++EV  + +G+ RWC+ H+GEAF AWMHVK+I+ +VESV+RYGLPVDF+A +     G+ AK+   L   +
Sbjct:  210 SGSGGQSMAISNSGQAPETSYRQLQNAAACPSAPYGEMFKLEVPSLMVGTLDSLMNLSDDLGKTDSIIESIVRKVEKSSVELAGRKGGDLTVGGVPSGRYVQQFAWDYAKFPNRRPLKELVSLIAGGVSAIDEELKQLSNSYGEKQVALQDAKRKRGGNLMTADLNDVLDEKVMRNVSVKDTEYLRTLFVAVPRAAVENFTADVYTLGSELVGYGGPDWSGNPA---GLGSAE-NFGQGVDRHGK-KGSPVVPGSLEKVTEDSESVLFAVTVLKGMYEAGYYEGDEFVPGTKTDLVGDFARILREKRYSVRESFVYDPSQQGKSALALEQLQVEVDNMRSGLTRWCKTHYGEAFVAWMHVKVIRVFVESVLRYGLPVDFTAVLYKVGSGKEAKLVGALDKAF 606          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A8K1CMT2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMT2_PYTOL)

HSP 1 Score: 324 bits (830), Expect = 3.720e-100
Identity = 190/437 (43.48%), Postives = 268/437 (61.33%), Query Frame = 1
Query:   46 SYTLVSLPNEKQPTDQV----LRKLKESPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE-QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVSQLSSGPVTAAGXXXXXXEDEDTAYVSDNFSIAS 1338
            S  LVS+PNE   + +     L+    S    YA+ +++E+P  L VGTLDSLM LSDDL R+D++VE++VRK+E+Q+ ++  +  + L V GV   +Y+  F WD +K   R+ LP +V++IQ SVGKIEEE + LS  +SEK Q L  L++KKG NL    L+++L+ E +     V+TE L TL V + K  E+ WL  Y +IG  IA                     ++GP   +RG V+GSPVVPGSS+K+LEEGD  +YTVTVL+GQYQ G  D +  F+ G   DYV +FK + +EKRF  RDFVF+P     N+    +L++EV +L +G+IRWC+AHFGE F AWMH+K+I+++VESV+RYGLPV+F   M  P KG+  K++  L   YAH+ Q S       G      + E   YV++ F+  S
Sbjct:    2 SVWLVSVPNEGNRSSETTFLELKAETASARHDYAECYRMELPSDLLVGTLDSLMALSDDLNRVDLVVESVVRKVERQFHDL-NKDDQALTVDGVPVDRYLNYFAWDEAKHPHRRPLPEIVSIIQSSVGKIEEELKQLSTRYSEKKQQLLQLQKKKGGNLMVANLNDILTPEVVSTSDFVNTEYLQTLVVIVPKNLEEAWLQEYHTIGDQIA---------------------EYGP-KGNRGNVRGSPVVPGSSRKLLEEGDASVYTVTVLKGQYQPGHLDKDGTFEQGTMHDYVEDFKNRAREKRFIVRDFVFDPTSHASNEEAIAELEVEVDRLWSGLIRWCKAHFGETFIAWMHIKMIRTFVESVLRYGLPVNFVVVMYRPHKGKEKKLRTVLAKKYAHL-QPSQFSGLEEGSSGSSAQAEYYPYVTNAFNAFS 414          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A485LS38_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS38_9STRA)

HSP 1 Score: 323 bits (829), Expect = 4.760e-100
Identity = 187/439 (42.60%), Postives = 277/439 (63.10%), Query Frame = 1
Query:   46 SYTLVSLPNE-KQPTDQVLRKLKE---SPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE-QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHV--SQLSSGPVTAAGXXXXXXEDEDTAYVSDNFSIAS 1338
            SY +V++PNE  + +D    +LK    S     ++++++++P  L VGTLDSLM L +D+ R+DM+VE  VRKIE+Q+ ++  +  E L V GV   +Y+  F WD +K   R+ L  ++++IQ S+GKIEEE + LS  ++EK Q L   ++KKG NL    L+++L+ + ++    V++E L TL V + K+QE+ WL+ Y +IG+DIA                     +FGP   SRG VKGSPVVP SS+K+LEEG+  LYTVT+L+GQYQ+G +D E  F+AG   DYV +FK   +EKRF ARDF F+P     N+ M  +L++EV +L+ G++RWC+AHFGE F AWMHVK I+ +VESV+RYGLPV+F A +  PK G+  ++++ L   Y H+  SQ ++   +AA         E   YVS++F+  S
Sbjct:    2 SYWVVAVPNEGNKSSDTTFNELKAETGSSKNDLSEVYRLDLPSDLLVGTLDSLMTLGEDMHRVDMVVEGAVRKIERQFHDL-NKGGEALTVDGVPVTRYLHHFSWDEAKHPHRRPLSEIISIIQSSIGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVANLTDILTPDIVKTSDFVNSEYLQTLVVVVPKSQEEVWLNEYATIGADIA---------------------EFGP-KQSRGAVKGSPVVPNSSRKLLEEGEACLYTVTILKGQYQSGAYDSEGNFEAGTLLDYVEKFKLAAREKRFTARDFTFDPTSHATNETMIAELEVEVNRLYTGLLRWCKAHFGETFIAWMHVKAIRVFVESVLRYGLPVNFVALLYKPKSGKEKRLREVLEKRYGHLQPSQFAAIEDSAAASTV-----EYFPYVSNSFTPLS 412          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A024UHQ9_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UHQ9_9STRA)

HSP 1 Score: 323 bits (829), Expect = 4.910e-100
Identity = 182/417 (43.65%), Postives = 266/417 (63.79%), Query Frame = 1
Query:   46 SYTLVSLPNE-KQPTDQVLRKLKE---SPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE-QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHV--SQLSSGPVTAAG 1272
            SY +V++PNE    +D    +LK    S     A++F++E+P  L VGTLDSLM L +D+ R+D++VE  VRKIE+Q+ E+  +  E L V GV   +Y+  F WD +K   R+ L  +V++IQ S+GKIEEE + LS  ++EK Q L   ++KKG NL    L+E+L+ + ++    V+TE L TL V + K+QE+ WL  Y +IG  IA                     ++GP   SRG VKGSPVVP SS+K+LEEGD  LYTVT+L+GQYQ+G +D +  F+ G   DYV +FK+  +EKRF ARDF F+P     N+ M  +L++EV +L++G++RWC+AHFGE F AWMH+K ++++VESV+RYGLPV+F A +   K G++ K++  L   Y H+  SQ ++   T++G
Sbjct:    2 SYWIVAVPNEGNNSSDSTFNELKAETASSKNDLAELFRLELPSDLLVGTLDSLMTLGEDMQRVDLVVEGAVRKIERQFYEL-NKGGEALTVDGVPVERYLHHFSWDEAKHPHRRPLSEIVSIIQSSIGKIEEELKQLSTRYTEKKQQLSLHQKKKGGNLLVTNLAEILTPDIVKTSDFVNTEYLQTLVVVVPKSQEEVWLQEYATIGDGIA---------------------EYGP-KQSRGTVKGSPVVPNSSRKLLEEGDACLYTVTILKGQYQSGSYDQDGNFEPGTLLDYVEKFKQAAREKRFTARDFTFDPTSHATNETMVAELEVEVNRLYSGLLRWCKAHFGETFIAWMHIKAVRTFVESVLRYGLPVNFVALLYKVKNGRDKKLRQVLDKRYEHLQPSQFAAVDDTSSG 395          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: A0A6G0WZK4_9STRA (V-type proton ATPase subunit C n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZK4_9STRA)

HSP 1 Score: 323 bits (827), Expect = 9.410e-100
Identity = 186/437 (42.56%), Postives = 269/437 (61.56%), Query Frame = 1
Query:   46 SYTLVSLPNE-KQPTDQVLRKLKE---SPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE-QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVSQLSSGPVTAAGXXXXXXEDEDTAYVSDNFSIAS 1338
            SY +V++PNE  + +D    +LK    S     ++++++E+P  L VGTLDSLM L +DL RIDM+VE  VRKIE+Q+ ++  +  E L V GV   +Y+  F WD +K   R+ L  +V++IQ S+GKIEEE + LS  ++EK Q L   ++KKG NL    L+++L+ + ++    ++TE L TL V + K+QE+ W+  Y +IG DIA                     +FGP   SR  V+GSPVVP SS+K+LEEGD  LYTVT+L+GQYQ+G +D +  F+AG   DYV +FK   +EKRF ARDF F+P     N+ M  +L++EV +L+ G++RWC+AHFGE F AWMHVK ++ +VESV+RYGLPV+F A +  PK G++ K++  L   Y H+       V  A         E   YVS++F+  S
Sbjct:    2 SYWVVAVPNEGNKSSDTTFNELKAETASSKNDLSELYRLELPSDLLVGTLDSLMTLGEDLNRIDMVVEGAVRKIERQFHDL-NKGGEALTVDGVPVERYLNHFSWDEAKHPHRRPLSEIVSIIQSSIGKIEEELKQLSTRYTEKKQQLSLSQKKKGGNLLVTNLADILTPDIVKTSDFINTEYLQTLVVVVPKSQEEVWISSYSTIGEDIA---------------------EFGP-KQSRSSVRGSPVVPNSSRKLLEEGDACLYTVTILKGQYQSGTYDQDGNFEAGSLLDYVEKFKHAAREKRFTARDFTFDPTSHATNETMIAELEVEVNRLYTGLLRWCKAHFGETFIAWMHVKAVRVFVESVLRYGLPVNFVAVLYKPKAGKDKKLRQYLDKRYEHLQPAQFAAVEDAAGASSV---EYYPYVSNSFTPLS 412          
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Match: W4H5I3_9STRA (V-type proton ATPase subunit C n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H5I3_9STRA)

HSP 1 Score: 322 bits (825), Expect = 1.860e-99
Identity = 189/439 (43.05%), Postives = 274/439 (62.41%), Query Frame = 1
Query:   46 SYTLVSLPNE-KQPTDQVLRKLKE---SPLKTYADIFKVEVPP-LQVGTLDSLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVRLFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQALKRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLDGYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVPGSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGE-QFQAGMSTDYVGEFKRKCKEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAFSAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAHVS--QLSSGPVTAAGXXXXXXEDEDTAYVSDNFSIAS 1338
            SY +V++PNE  + +D    +LK    S    +AD++++++P  L VGTLDSLM L +D+ R+D++VE  VRKIE+Q+ ++  +  E L V GV   +Y+  F WD +K   R+ L  +V++IQ SVGKIEEE + LS  ++EK Q L   ++KKG NL    L+++L+ + ++    V+TE L TL V + K+QE  WL  Y SIG DIA                     +FGP   SRG VKGSPVVP SS+K+LEEGD  LYTVT+L+GQYQ+G +D +  F+ G   DYV +FK   +EKRF ARDF F+P     N+ +  +L++EV +L++G++RWC+AHFGE F AWMHVK ++ +VESV+RYGLPV+F A +  PK G++ K++  L   Y H+   Q ++   +AA         E   YVS++F+  S
Sbjct:    2 SYWVVAVPNEGNKSSDATFNELKAETASSKNDFADLYRLDLPSDLLVGTLDSLMTLGEDMHRVDLVVEGAVRKIERQFHDL-NKGGEALTVDGVPVERYLHHFSWDEAKHPHRRPLSEIVSIIQSSVGKIEEELKQLSTRYTEKKQQLALHQKKKGGNLLVTNLADILTPDIVKTSDFVNTEYLQTLVVVVPKSQEAVWLQEYTSIGDDIA---------------------EFGPKH-SRGNVKGSPVVPHSSRKLLEEGDACLYTVTILKGQYQSGSYDQDGNFEPGTLLDYVEKFKLAAREKRFMARDFTFDPTSHATNETLVAELEVEVNRLYSGLLRWCKAHFGETFIAWMHVKAVRVFVESVLRYGLPVNFVAMLFKPKAGRDKKLRQALDKRYEHLQPPQFAAVDDSAAAAAV-----EYFPYVSNSFTPLS 412          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q6_ECTSI4.550e-26787.16V-type proton ATPase subunit C n=2 Tax=Ectocarpus ... [more]
A0A835Z1N8_9STRA4.230e-15955.94V-type proton ATPase subunit C n=1 Tax=Tribonema m... [more]
A0A6V1R0R9_HETAK3.290e-10742.08V-type proton ATPase subunit C n=1 Tax=Heterosigma... [more]
A0A7S2LK85_9STRA1.160e-10143.58V-type proton ATPase subunit C n=1 Tax=Leptocylind... [more]
K0TGY8_THAOC2.240e-10044.53V-type proton ATPase subunit C (Fragment) n=1 Tax=... [more]
A0A8K1CMT2_PYTOL3.720e-10043.48Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LS38_9STRA4.760e-10042.60V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
A0A024UHQ9_9STRA4.910e-10043.65V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
A0A6G0WZK4_9STRA9.410e-10042.56V-type proton ATPase subunit C n=1 Tax=Aphanomyces... [more]
W4H5I3_9STRA1.860e-9943.05V-type proton ATPase subunit C n=2 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:356420..363934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score751.9
Seed ortholog evalue1.7e-214
Seed eggNOG ortholog2880.D7G2Q6
Preferred nameATP6V1C2
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0000902,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009507,GO:0009536,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009826,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030177,GO:0030641,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0040007,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045177,GO:0045184,GO:0045851,GO:0046961,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060560,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-exporting ATPase activity, phosphorylative mechanism
EggNOG OGsCOG5127@1,KOG2909@2759
Ec32 ortholog descriptionATPase, V1 complex, subunit C
Ec32 orthologEc-11_003120.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons9
Model size2236
Cds size1311
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.606121-UTR-C-linearis_contig97:356419..3564521622930834.606121-UTR-C-linearis_contig97:356419..356452Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 356420..356452 +
1690881273.8890777-UTR-C-linearis_contig97:356419..3564521690881273.8890777-UTR-C-linearis_contig97:356419..356452Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 356420..356452 +
1622930834.820861-UTR-C-linearis_contig97:363042..3639341622930834.820861-UTR-C-linearis_contig97:363042..363934Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 363043..363934 +
1690881274.0132766-UTR-C-linearis_contig97:363042..3639341690881274.0132766-UTR-C-linearis_contig97:363042..363934Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 363043..363934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.6259518-CDS-C-linearis_contig97:356452..3565121622930834.6259518-CDS-C-linearis_contig97:356452..356512Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 356453..356512 +
1690881273.9047153-CDS-C-linearis_contig97:356452..3565121690881273.9047153-CDS-C-linearis_contig97:356452..356512Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 356453..356512 +
1622930834.6450796-CDS-C-linearis_contig97:357969..3580441622930834.6450796-CDS-C-linearis_contig97:357969..358044Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 357970..358044 +
1690881273.913516-CDS-C-linearis_contig97:357969..3580441690881273.913516-CDS-C-linearis_contig97:357969..358044Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 357970..358044 +
1622930834.669039-CDS-C-linearis_contig97:358473..3586051622930834.669039-CDS-C-linearis_contig97:358473..358605Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 358474..358605 +
1690881273.9234874-CDS-C-linearis_contig97:358473..3586051690881273.9234874-CDS-C-linearis_contig97:358473..358605Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 358474..358605 +
1622930834.6847503-CDS-C-linearis_contig97:360381..3605581622930834.6847503-CDS-C-linearis_contig97:360381..360558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 360382..360558 +
1690881273.9377532-CDS-C-linearis_contig97:360381..3605581690881273.9377532-CDS-C-linearis_contig97:360381..360558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 360382..360558 +
1622930834.6996815-CDS-C-linearis_contig97:360939..3611161622930834.6996815-CDS-C-linearis_contig97:360939..361116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 360940..361116 +
1690881273.948928-CDS-C-linearis_contig97:360939..3611161690881273.948928-CDS-C-linearis_contig97:360939..361116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 360940..361116 +
1622930834.7206364-CDS-C-linearis_contig97:361475..3616791622930834.7206364-CDS-C-linearis_contig97:361475..361679Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 361476..361679 +
1690881273.9596477-CDS-C-linearis_contig97:361475..3616791690881273.9596477-CDS-C-linearis_contig97:361475..361679Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 361476..361679 +
1622930834.7508616-CDS-C-linearis_contig97:361952..3621051622930834.7508616-CDS-C-linearis_contig97:361952..362105Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 361953..362105 +
1690881273.9719834-CDS-C-linearis_contig97:361952..3621051690881273.9719834-CDS-C-linearis_contig97:361952..362105Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 361953..362105 +
1622930834.775736-CDS-C-linearis_contig97:362423..3626121622930834.775736-CDS-C-linearis_contig97:362423..362612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 362424..362612 +
1690881273.9841266-CDS-C-linearis_contig97:362423..3626121690881273.9841266-CDS-C-linearis_contig97:362423..362612Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 362424..362612 +
1622930834.8008835-CDS-C-linearis_contig97:362898..3630421622930834.8008835-CDS-C-linearis_contig97:362898..363042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 362899..363042 +
1690881274.0025315-CDS-C-linearis_contig97:362898..3630421690881274.0025315-CDS-C-linearis_contig97:362898..363042Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 362899..363042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17096.1prot_C-linearis_contig97.17096.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 356453..363042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17096.1

>prot_C-linearis_contig97.17096.1 ID=prot_C-linearis_contig97.17096.1|Name=mRNA_C-linearis_contig97.17096.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=437bp
MSGTSYTLVSLPNEKQPTDQVLRKLKESPLKTYADIFKVEVPPLQVGTLD
SLMQLSDDLVRIDMLVENMVRKIEKQYLEVAGETPETLKVAGVSAGQYVR
LFEWDYSKFAVRQRLPALVALIQGSVGKIEEEHRNLSMVFSEKNQSLQAL
KRKKGNNLATVELSEVLSREQLRGIMMVDTENLLTLAVAMSKAQEKDWLD
GYESIGSDIASLGSPDWSNPSVAYSLGTQDGQFGPGFSSRGVVKGSPVVP
GSSQKVLEEGDQVLYTVTVLRGQYQAGFHDGEQFQAGMSTDYVGEFKRKC
KEKRFNARDFVFNPERAGQNQRMEEQLKLEVQQLHAGMIRWCRAHFGEAF
SAWMHVKLIKSYVESVMRYGLPVDFSAFMLAPKKGQNAKVKDTLGSMYAH
VSQLSSGPVTAAGGDDDDKEDEDTAYVSDNFSIASK*
back to top

mRNA from alignment at C-linearis_contig97:356420..363934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17096.1 ID=mRNA_C-linearis_contig97.17096.1|Name=mRNA_C-linearis_contig97.17096.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7515bp|location=Sequence derived from alignment at C-linearis_contig97:356420..363934+ (Chordaria linearis ClinC8C monoicous)
CCGGCGGTCGCAGCAAAAAAACGAGAGGGCGCTATGAGTGGAACCAGCTA CACGCTAGTGTCGCTACCCAATGAGAAGCAGCCCACGGACCAGGTGCGGA CAGGGATCTGAGAATCGAGAGAAAGGGAGAGCTTTCGGCACAGAGGTTGA GAATAGAAGAAGCGGTGTAAAACTATCCCTTCTCGACACAGCACACGGGC ATGCTATGCGAACCCAAGTGGGCGTTAGGCAACATACGTGGAGCACATTT CGAAGGGAATTCATTCGCGTCACTCAGGAATAGGGTGTGCTTCAGGCAGC TCAGGCCGAATTATCGCCTGATTGACCTTCTCTGCTTTAGTTGTCGATTT TCTCCCGGCTCTATCCGAGAGATGGTTCCGCTGGGGAAAGCTGATAAGAA AGCGACCTGAGTGCCGGCCTCGGTGAGTCTCCTGGGCCGTTTTGCTAGGA GACCGGTTGGCGAAGCGGGTTACCTCAATAGTCGCAGCGCTTGTCCCCAC TGTTGGTTGTTTCCTGTCCATCATGGGAGCTAGTCAACGCCAGATGTTAT TGCACCCTAAGACGAGCGCCAACCCCGAAAGCACAAGTGTCCTATCTGTC TCAGGCCGCGTCACTTGTTCGAGTGTTCTATAGTACTATGTGATACACGA GACAAAGTCGCACACCACTATCCTTCTATGCCGACAGATCTACATACCTA TCTCTGCGTTTCTTTCCCGTCCATGGTGTATTTTTGTTTCTGCATGCCAC GTTCGCGTGTGCCTGCAGCAAATCGTCAATGGGAGAAGATGAGGGAAGGA CATGAATCCGTCCGCAATACAGAGTATTAATAGTGCAAGAGGATCTATAT TGCACACAAGACCGAACCGATGTTTTCCCCTTTATCCTTAACTTTGACTT TACCTATTTCGAGTGCTGAAATGTGTATCCAGACCCTTTGGCACACAAGT CGAGCACATGCGCCAAAAAAGCCATTTTGAGTTTCGCACAACTAGAACAT ACTTGTAGATGTCGCACGCCTGGCTCCTGTGGCTGGTGCTCTCGACACTC AAATGCTGCCAGCGTTAGCATTTCGCGTGCCCATGCTCGTTTCTCTGGAG GTGGAGCTCCCAAATGTCATGCTTGCAGCAATGGCTGCCGCTGCCGAACT ACAGTCTGAAGTGCTCAGAGGCGCAGGGGGAAAGTGGTGGTGTCTCTACC GCGCAAGCAGGATATGGTGCATCTATAAACCCAACTCTTCTCTCTCGTTG CTTGCCTTAGGTCTCCAGGTTTTGTCCGGTCGTGACGGTCGTACGTTATT TTCTTCTTTGCCCCCCCCCTTCCCCTAGTGCTAGTGTTAATCAACACCCT TGTTTTATCTTCTGTGCCGAGGAGAGGAGAAAACACGCGGGTGGCTATTT TCGATAAATCGTACTACTTCAGTACAGTATGTCATCTTCATCTCGCCACT CGTTCCCCGACATTTTGCGTTTCATTTTAGGCGCGCCTATTGACTTGCTT GTTGTTTTTGTGTTGCTCTTGTATATGAACTATATATTTCTACGAGACAG GTGTTGCGAAAGCTGAAAGAATCACCCCTCAAGACCTATGCCGACATCTT CAAGGTGGAGGTGCCTCCTCTTCAGGTGGGTGTAGTCTGCTGTGTAAATC GTTTCATACTCCGAATATATTTTTTTGTTTCGTTAGCCGACCACGCCGAC TAAGGCCTCATCTGCAATTCTGCTTTGTCTCATTTCCTCGGGTAGCCGGT CCCTTTGTTTGACAAACGGCAGTAGGTGCCCCGAGGCTTGCTGCACGACC AGAAGTGGCAATGTTCAATGTCGTTTCTGGGTCATGAACCCAGGTTTTCC AATCTGCCGCATGAAGGCTCTCTCGCATAATTGCTAAACTGTTGAATAGT GTCACATTGTTCGCCACTTCCCGACCCTGATCGCTGCGCTGGCTCAAATG CTCAAGTAGTGGTTTCTGTCCAAAATACTCGCCGGCTCAATTGTGTCTTG CTGCCCGTGTTGATCGATCGTCTTTGTTTTCCATGTGATGGCATTGTGTG ACAGGTCGGCACCCTAGACTCTTTGATGCAGCTTTCAGACGACCTCGTTC GAATCGACATGCTCGTGGAGAACATGGTCCGCAAGATAGAGAAACAGTAC TTGGAGGTGGCGGGCGAGACACCGGAGACCCTCAAGGTATGCCATATTCC ATGATGCTGTGATAGTATCATCTGGTGAACATATTTACCATTGCTGAGTT TCGCGATATATACCACAGGGATAGCATTATACTTGTATTCGCGTACGTAG GTACTTCTGGGACAAGGTAAGGAGATGGGACCAAATAATTCAAGAGAGGT CATACCTCTATGGGCCTTTTTCTACTTTGGGCATTTTGTTCCTCTCCGAC CTCAAAAGCGGTTCCCGAGCTCGAGCTCACTATAACACGAAGTCAAGCTT TTGGTTCTCTTCTCTCAGCCACCGCACATCAGTTTACTATCGCCGTTTTC TTCTTTTTTTTTCCCGTTTCGTCTGCAATCGCACGCCAATAAAGAACACA CCACGCCCTTAAGAGTATCGCGCTCTACCGTGCTCTCTGTGCGCAGCTAG ACGGTTCGGAACGTAGCTGCACGTTCGGGACCGTTCGTGAGCAGTTTCCG TCGGTACAATGAACAGAAATTTCTAATCGGCCGATGAGCGATGCCGGGTC CTGACTCTGTTTTGCCGGCTGCCAGGTGTTGGCGCAGCCAGGGGAAGACA CTCTGAACGGTGTTTTCACACAATGCACGGGGCTGTAACAAAACACGAGC CGTTGTTGTCATTATCAGAAGCTCGCACGGCGCGCCTCACTACACGTGTT GAATGGGGGGTGTTCCTCACGCGGCTCTCGTTGGTGTTTGACTGCGGAAA GACGAAGCCATGCATCACCCTTTGTTTGGTTGTGGAGCTTCTTTTTTGTA ACAACGTAAGAAACACCAGCATTTCGCAGAAAGTGCAACAAAAAAAGATC ATGAACACAACCAGCAAAGTTCTTCTGTATAAATACGATAGTACTTCCAG CTGAGCGGGTGACACACCATTGTCCGCTTCTTCCCACGTGCTGTTGCGTG TGAGCTTTTTCGGCTCTTGCTACTGCTGTAGTACAAATATGTAGATCTCT GTTCTGAGGACACCACACAGAGTAGACGTCATTCAGTGCATCCGAGCATC ATCCTCTCATTGGAGATATTTTGATCTTTTCCGTGATGGATCACACGGAT CGACGGAGAGGGTTGTGTGTATGCAAGTGTGAGTGATGATGATACGCCTC CACTATAATAGCACGAAAAGCGGAGAGGCAAAATATATTAAAGATCGTCT GTTTGAATGCTTCATGCGCCCCTCCCCCTTGGCACGACTACAGCATGCCG ACCGCTCACGACCTAGATTAAACTTTAGCTGCGCGGCTTACGCGGAGCGC GATGCCCCGTAGGGCTAAAGGCCATCGTGCGAAGCCGCTTGTAGGTTCAT GATAAATAGCTTTGTTGTGTTGCTCTAAGGCTCGCCCCAGTTGCGTGCGT GGAATGGGCTGGATCTTGCTACCATGTTACCCATCACATTCCGTAGGAGA TGGGCCGTGCAATCGGCAGTGGCACGAGTCACGCCAAGAATCCTCGACAT AAGAGGGCTGACTCCACAAAGTATTTTCTACCTCGAAGCGTGTCCACCAG TAACACCCTTCTCCCCCACCCCCTTAGGAAAGTATAAGGATCCTTGTTGC AGGGTAGCCATGTTCACGTTTGTCTTCGTATTTTGTATTTTTCCTAGCTC ACCTTGAAGCCATTCCCGCGTCCCGTCATATCTGTACGCCATCATCATTT TCAATGCTCTGTTGGCGCCTTCGTTTTCTGTGTTGGCGCTGGTGCGTCCT TTGTCTGGTCTCGCGGCTTTCTCACGTCGTGGCTCGTCGTGGCTCTTACT CTAACGTCACAGGTTGCCGGAGTGTCAGCGGGGCAGTACGTGCGGCTGTT CGAATGGGACTACTCTAAGTTTGCGGTGCGCCAGAGGCTGCCCGCTCTCG TTGCGCTAATCCAGGGCTCCGTCGGCAAGATCGAGGAGGAGCACCGAAAC CTGTCCATGGTCTTCTCCGAGAAGAACCAGTCCTTGCAGGTCAGGGTTAA ATTAGCTTGCCATATCTTACCTTACTTAGACGAGGTCCGGTTAGATTAGG TTTGGTTAGGTTAGGTCAGGGTAGCAGGGTAGGTTAGGTGAGCCAGGCTT GTCCTCGGTCCGGGCAGCGCAGTTGAAGCGATTTTCTCCACTTAGGAGGC CTGCCTGCGCTCACGTCCTCCTCTATCGTCGGCCATCCGCCCTGAAAAAG CTTGCTCTCGTTGCCCTGTCATGCCGGCGAGTTCGAACCCCTCCCCCCGC TGCGTGCTTGTTCCTGGTCGCGGTCGCTGAGATACACACTCGATAAGACT CGGCGGTCCAACGGCGAATCACTCATCAGCACCCACTCCCGCCTCCGCTC ACTCTGTTCGCGCCGCGCAGGCGCTCAAGCGCAAGAAGGGCAACAACCTG GCCACCGTTGAGCTGTCGGAGGTGCTGTCACGGGAGCAGCTGCGCGGGAT CATGATGGTGGACACAGAAAACCTCCTGACCCTCGCCGTGGCGATGTCCA AGGCGCAGGAGAAGGATTGGCTGGACGGATACGAGTCGATCGGAAGCGTG AGTCTGCTACTCGGAGTATTGCGATGGAACAGAAAATGCACGACGTGCTA CACCCACAGCTTTAGACAGTCGGCTAACAGGCAGCAGGCAGGCATATGTA TCTAGCACTAAGGGTGAATCGTTTGCCATGGGCTTTCATTGAGAAGGGAG TGTGGGAAGGGGGAAACGCCTGCGTCTGTAGTCGGTGCACCCCCACATCC CGCCCTTGGGCATTCACGATGGCGGCAACACAACCCATACGCGATGAAGC GGGTCGAGGAGTGCGATGCAACAGTAGTCGGCACAAAGAGTGCAACCTAA AATCGAACCGCATTCTCAAGCTCGTCACGTGCATGTGGGTGTGCGTGTCT CCACAGGACATCGCTTCTCTCGGGAGCCCGGACTGGTCGAACCCTAGCGT AGCGTACAGCCTCGGCACCCAGGACGGCCAGTTCGGACCCGGCTTCTCCA GCCGCGGCGTCGTTAAGGGGTCGCCCGTCGTGCCCGGTTCGAGCCAAAAG GTTCTGGAGGAGGGAGACCAGGTTCTCTACACCGTTACCGTGCTGAGAGG GCAGTACCAGGTGAGGTCCAAGGTTCGAGATTCGAGTGTGATGGGGTTTG GTCGTTGGGCGATTCGAGGGGCTTGCATGCTTGGATGCATAGCGGGATGC TTTTTTCGCGGCATATTTCGTTTTGTTCTCTTTCTTCTGTTTTAGGGAGG CTTTCCGGGGGCTTTCTGTGCGCGGGAATATATTTCTACGTTCGTCGGTT ATTGACGTGAGGTTTAAGGCGGTGACTTGTGTGTCTTGTCTTGTCTATGG TGGTCATGTCATGTGTTGTCATATCCTCGACAGGCGGGTTTCCACGACGG AGAGCAGTTTCAGGCGGGGATGTCGACAGACTACGTGGGCGAGTTCAAGC GGAAGTGCAAGGAGAAGCGCTTCAACGCTCGAGACTTCGTCTTTAACCCG GAGAGGGCCGGGCAGAACCAGCGCATGGAGGAACAGGTGTGCAGTGTAGG TGGCGGTGAAAGTGCAGGTGTGAAGGCTAGCTGACTACCGGACTACAGCT GCTGCCGTGGTTTGATTTGCCGACCTCTAAGTAGAAGTGACATGTCTGCG GAGATGTCGGAGAGGGCGCGATTTCTCTGCTGTAAGAATGGGGCGGCGTT GCACACCTCTTTCCCGCCCATCGTAAGCTCACTGCCTGCCTCCCGCACCT CGCCCGCGCGCGTACGTCGTCACGCCTCCACCGCACAACACACGACCACG CAAAATCAACCAAATGCCTCCTGCATCTGCCCTGCGCCGCCCCTTCCCCT TCAGCTCAAGTTGGAGGTCCAGCAGTTGCACGCGGGCATGATCCGGTGGT GCCGGGCACACTTTGGGGAGGCGTTCTCGGCGTGGATGCACGTCAAGCTG ATCAAGTCGTACGTGGAGAGCGTCATGCGCTACGGGCTCCCCGTTGACTT CTCGGCCTTCATGCTCGCACCGAAAAAGGGCCAGAACGCCAAGGTACATA CGCGGTTGCGGTGGTGCGGTGTGTGCGTGTACATAGATGTTTAAAATCTT TGATTCGACGGAGCACCCAACTTTGTTGGCCCAGGCACATGTAGTTTGGA ACGGTGAGGGAAGGGTTAGCGTGTATACAACAGTCCCCCTAGAACGCACG TCAACTACCTGGACTCTCATCTAAAGCAGACCCCCCCTCTCTCTCTCTCG CCCTCACACTCTTTCTTTCGTTCTGCGGTCGGATCCCCTCCATACCCACC CACACGCGCGTACACGAACTTCAACGCAGGTGAAGGACACGCTCGGCTCG ATGTACGCGCACGTGTCTCAGCTCAGCTCCGGGCCTGTAACGGCCGCCGG TGGAGACGATGACGATAAGGAGGACGAAGACACAGCCTACGTATCCGATA ACTTCTCGATCGCGTCCAAGTAGTACGATAGTCGGTAAAGGAAGGCAGGC AGGAGGAGAACCGGGTCAGATTGCAGCTGTCTGGTGTACACGGTGGTGGA CTTGGCTCGCTTTTTGTGTCCTGTCCTTTCTTGCCCAGGGTTAGGGACTG AAGGGACATCTTGAGTCAAGTACCAGCGTATCAGTCATCCAACGACGTAT AGGGGGAGGAAGCGAAATCTATCCTGTAGGGTTAGGCACCTTTCTCTTGA GAGCCACGTGACGACTCACCGGGAGGCGAGCCTCGCTTGATAAAGGCTCG CAAACCCTTGCGGCAATAGCAATAACCCCGAGGGTGGCATGTGTGTGCTT GGGGCAAAATAGTCGGCAAAGTTTACGCGCCGGGGTGAGGAGCGAGATAC AGGTTGTGCCCGGCTCGCCGTAGCTGGGCTGCATATCTATCATGATCGTT TTCGTTTGGAATCTTTAATCTTTGGTGTCTCGGAACAGTTCTGAAGGGGG TTACCACAGGCGGGCGAGAGAAAGCACCTCTCCAATGCGGGCTTTGATTG TCGAAACATGCAGCAAAGTTTTTCGGGTTAGTGCACGTGCGGGGGGGGGA AGGTTCGTGAGAGGAGGGAGAGTTTTTTTGCTCGGAACTGCTGTTGTTCG GTTCCCGCTGTTTCGGCTACTTTGCAGTGTTGTTCGTGTCTTGATCTTGA TCCGAGTTTCGTGTCGGTTCTCGACCTGACGTCCAGAAGGCAGCTGCATG CACATGATAAGTTGTGCGACGTTCTTGTTTGGTGTCTTTTGGTGCGCTTG CCTGTGGAGCCGGACAGAAGACAAGGAGAGGGAGTCCTCGATATTCGCTT GTACTTTGTTTCTTGGAGCGTGTTCACCGTTTCTCTTCGTGGCGTTGTGG GTCGTGGGCGGGGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig97:356420..363934+

>mRNA_C-linearis_contig97.17096.1 ID=mRNA_C-linearis_contig97.17096.1|Name=mRNA_C-linearis_contig97.17096.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2622bp|location=Sequence derived from alignment at C-linearis_contig97:356420..363934+ (Chordaria linearis ClinC8C monoicous)
ATGAGTGGAACCAGCTACACGCTAGTGTCGCTACCCAATGAGAAGCAGCC
CACGGACCAGATGAGTGGAACCAGCTACACGCTAGTGTCGCTACCCAATG
AGAAGCAGCCCACGGACCAGGTGTTGCGAAAGCTGAAAGAATCACCCCTC
AAGACCTATGCCGACATCTTCAAGGTGGAGGTGCCTCCTCTTCAGGTGTT
GCGAAAGCTGAAAGAATCACCCCTCAAGACCTATGCCGACATCTTCAAGG
TGGAGGTGCCTCCTCTTCAGGTCGGCACCCTAGACTCTTTGATGCAGCTT
TCAGACGACCTCGTTCGAATCGACATGCTCGTGGAGAACATGGTCCGCAA
GATAGAGAAACAGTACTTGGAGGTGGCGGGCGAGACACCGGAGACCCTCA
AGGTCGGCACCCTAGACTCTTTGATGCAGCTTTCAGACGACCTCGTTCGA
ATCGACATGCTCGTGGAGAACATGGTCCGCAAGATAGAGAAACAGTACTT
GGAGGTGGCGGGCGAGACACCGGAGACCCTCAAGGTTGCCGGAGTGTCAG
CGGGGCAGTACGTGCGGCTGTTCGAATGGGACTACTCTAAGTTTGCGGTG
CGCCAGAGGCTGCCCGCTCTCGTTGCGCTAATCCAGGGCTCCGTCGGCAA
GATCGAGGAGGAGCACCGAAACCTGTCCATGGTCTTCTCCGAGAAGAACC
AGTCCTTGCAGGTTGCCGGAGTGTCAGCGGGGCAGTACGTGCGGCTGTTC
GAATGGGACTACTCTAAGTTTGCGGTGCGCCAGAGGCTGCCCGCTCTCGT
TGCGCTAATCCAGGGCTCCGTCGGCAAGATCGAGGAGGAGCACCGAAACC
TGTCCATGGTCTTCTCCGAGAAGAACCAGTCCTTGCAGGCGCTCAAGCGC
AAGAAGGGCAACAACCTGGCCACCGTTGAGCTGTCGGAGGTGCTGTCACG
GGAGCAGCTGCGCGGGATCATGATGGTGGACACAGAAAACCTCCTGACCC
TCGCCGTGGCGATGTCCAAGGCGCAGGAGAAGGATTGGCTGGACGGATAC
GAGTCGATCGGAAGCGCGCTCAAGCGCAAGAAGGGCAACAACCTGGCCAC
CGTTGAGCTGTCGGAGGTGCTGTCACGGGAGCAGCTGCGCGGGATCATGA
TGGTGGACACAGAAAACCTCCTGACCCTCGCCGTGGCGATGTCCAAGGCG
CAGGAGAAGGATTGGCTGGACGGATACGAGTCGATCGGAAGCGACATCGC
TTCTCTCGGGAGCCCGGACTGGTCGAACCCTAGCGTAGCGTACAGCCTCG
GCACCCAGGACGGCCAGTTCGGACCCGGCTTCTCCAGCCGCGGCGTCGTT
AAGGGGTCGCCCGTCGTGCCCGGTTCGAGCCAAAAGGTTCTGGAGGAGGG
AGACCAGGTTCTCTACACCGTTACCGTGCTGAGAGGGCAGTACCAGGACA
TCGCTTCTCTCGGGAGCCCGGACTGGTCGAACCCTAGCGTAGCGTACAGC
CTCGGCACCCAGGACGGCCAGTTCGGACCCGGCTTCTCCAGCCGCGGCGT
CGTTAAGGGGTCGCCCGTCGTGCCCGGTTCGAGCCAAAAGGTTCTGGAGG
AGGGAGACCAGGTTCTCTACACCGTTACCGTGCTGAGAGGGCAGTACCAG
GCGGGTTTCCACGACGGAGAGCAGTTTCAGGCGGGGATGTCGACAGACTA
CGTGGGCGAGTTCAAGCGGAAGTGCAAGGAGAAGCGCTTCAACGCTCGAG
ACTTCGTCTTTAACCCGGAGAGGGCCGGGCAGAACCAGCGCATGGAGGAA
CAGGCGGGTTTCCACGACGGAGAGCAGTTTCAGGCGGGGATGTCGACAGA
CTACGTGGGCGAGTTCAAGCGGAAGTGCAAGGAGAAGCGCTTCAACGCTC
GAGACTTCGTCTTTAACCCGGAGAGGGCCGGGCAGAACCAGCGCATGGAG
GAACAGCTCAAGTTGGAGGTCCAGCAGTTGCACGCGGGCATGATCCGGTG
GTGCCGGGCACACTTTGGGGAGGCGTTCTCGGCGTGGATGCACGTCAAGC
TGATCAAGTCGTACGTGGAGAGCGTCATGCGCTACGGGCTCCCCGTTGAC
TTCTCGGCCTTCATGCTCGCACCGAAAAAGGGCCAGAACGCCAAGCTCAA
GTTGGAGGTCCAGCAGTTGCACGCGGGCATGATCCGGTGGTGCCGGGCAC
ACTTTGGGGAGGCGTTCTCGGCGTGGATGCACGTCAAGCTGATCAAGTCG
TACGTGGAGAGCGTCATGCGCTACGGGCTCCCCGTTGACTTCTCGGCCTT
CATGCTCGCACCGAAAAAGGGCCAGAACGCCAAGGTGAAGGACACGCTCG
GCTCGATGTACGCGCACGTGTCTCAGCTCAGCTCCGGGCCTGTAACGGCC
GCCGGTGGAGACGATGACGATAAGGAGGACGAAGACACAGCCTACGTATC
CGATAACTTCTCGATCGCGTCCAAGTAGGTGAAGGACACGCTCGGCTCGA
TGTACGCGCACGTGTCTCAGCTCAGCTCCGGGCCTGTAACGGCCGCCGGT
GGAGACGATGACGATAAGGAGGACGAAGACACAGCCTACGTATCCGATAA
CTTCTCGATCGCGTCCAAGTAG
back to top