mRNA_C-linearis_contig97.17084.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17084.1
Unique NamemRNA_C-linearis_contig97.17084.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 6.370e-61
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1 
Query:    1 MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
            MKFL FF+VCLTAVSGFVAP+ PRLS +VRP+TAA PMRMGLKED QK A  ASVAVLTAAPA ATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR
Sbjct:    1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.390e-18
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    4 KFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
            K L   +  + A S FVAP+AP    +     +AAP    +         T S A+L+AAPA ATEGT E LG +N  A  VPL  + +INL+F  WA+ QPEG+FF EYDERR
Sbjct:    3 KVLLAALCMVAAASAFVAPAAPTAIRATTTVMSAAPKAGAIA--------TVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.440e-16
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:   22 MVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
            +V     + FVAP+AP +  +   + +AAP ++G       A  TAS A+LT+AP  ATEGT E  G ++     +PL  +V INL+F  WA+ QPEG+FF EYDERR
Sbjct:   12 LVAAMGANAFVAPAAPTMRAATVMSMSAAP-KVG-------AIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A7V5M5A5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M5A5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.490e-5
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:  187 AFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGD-FFAEYDERR 345
            A+AT+GTGEPLG ++S+ +IV L   +++ +LF +W+  Q +GD F  EYD RR
Sbjct:   80 AWATDGTGEPLGIDDSRLLIVLLGVFITMLVLFISWSSKQDDGDDFVGEYDPRR 133
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A7J7IM13_9RHOD (PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM13_9RHOD)

HSP 1 Score: 53.1 bits (126), Expect = 3.640e-5
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:  151 TTASVAVLTAAPA-FATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWA-KDQPEGDFFAEYDERR 345
            TT   + LT  PA +AT+GTGEPLG ++S+ ++V L   ++I  LF  W+ K   + DF  EYD RR
Sbjct:   65 TTVLASSLTFGPAAWATDGTGEPLGIDDSRLLVVLLGIFITILALFIGWSSKQDDQDDFVGEYDPRR 131
[Close]
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC)

HSP 1 Score: 52.4 bits (124), Expect = 4.950e-5
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1 
Query:   13 AFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMR----MGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQA----VIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
            A  +  + A + F AP +  L   +R AT A  M+    + + E  +KA   A      AAPAFA EGTGE LG ++ +     ++VPLF    + LLF  +A +Q   DFF  YD+RR
Sbjct:    5 ALLLALVAAAAAFTAPHSAGLR--LRSATPAMSMKADSNIRIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGKLLIPIIVVPLF----VFLLFQGFAANQDNEDFFDTYDQRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2S2_ECTSI6.370e-6188.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z064_9STRA4.390e-1845.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAY3_9STRA3.440e-1644.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5M5A5_9BACT1.490e-548.15Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7J7IM13_9RHOD3.640e-544.78PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmi... [more]
L1JFS1_GUITC4.950e-536.97Uncharacterized protein n=4 Tax=Guillardia theta T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:285868..288703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003300.1
Exons3
Model size990
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17084.1prot_C-linearis_contig97.17084.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 286510..288703 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.4974658-UTR-C-linearis_contig97:285867..2865091622930832.4974658-UTR-C-linearis_contig97:285867..286509Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 285868..286509 -
1690881272.7995899-UTR-C-linearis_contig97:285867..2865091690881272.7995899-UTR-C-linearis_contig97:285867..286509Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 285868..286509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.511429-CDS-C-linearis_contig97:286509..2865511622930832.511429-CDS-C-linearis_contig97:286509..286551Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 286510..286551 -
1690881272.8115578-CDS-C-linearis_contig97:286509..2865511690881272.8115578-CDS-C-linearis_contig97:286509..286551Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 286510..286551 -
1622930832.530821-CDS-C-linearis_contig97:287691..2877841622930832.530821-CDS-C-linearis_contig97:287691..287784Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 287692..287784 -
1690881272.8196049-CDS-C-linearis_contig97:287691..2877841690881272.8196049-CDS-C-linearis_contig97:287691..287784Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 287692..287784 -
1622930832.5511105-CDS-C-linearis_contig97:288490..2887031622930832.5511105-CDS-C-linearis_contig97:288490..288703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 288491..288703 -
1690881272.8315735-CDS-C-linearis_contig97:288490..2887031690881272.8315735-CDS-C-linearis_contig97:288490..288703Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 288491..288703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17084.1

>prot_C-linearis_contig97.17084.1 ID=prot_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAA
TTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAK
DQPEGDFFAEYDERR*
back to top

mRNA from alignment at C-linearis_contig97:285868..288703-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2836bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous)
ATGAAGTTCCTGGCCTTTTTCATGGTGTGCCTAACGGCAGTAAGCGGGTT
CGTTGCGCCCAGCGCCCCCCGCCTATCCACCTCCGTGCGTCCCGCGACCG
CCGCCGCACCCATGCGCATGGGCCTCAAGGAGGACTTCCAGAAGGCGGCC
ACCACCGCATCGGTGGCAGTCCTCACCGCCGCGCCTGCCTTTGCAACTGA
GGGAACCGGGGAGGTGCGTGCTGGTTTGGTTGTGGTGTTGGATGGGCTGG
AAAAGTTGGTTCATGCTACGTATTTTAGCTCGGTTTTGTTGACTTCGTGA
GTCAGTTCATGAGAGAGGGGAGAGAGCTTTTGGCCCCCCGCGCTTGAAGC
TGTTGTCTCTCTGTTCTCGGGATCATCGTCGTTTGGGAGTGTGTTCGAGA
ATCATGGGCCTTCGAAACGTGATCAAGTCACGGATACTCCACCCCAAGTC
GGCCGCTGTATGCATAGCTGGAGTTATCGAAAGACAATCGGTGAAAAAAA
TCGTAGTTCGGCGCAAACGTCTTGCTCTCACAGAGGAGCATGTTTCTTCC
CACAGCAGCAGCTACGAATGTGTAGCCAAAAATAACAAAATAACCAACAA
GCCCTACGTTTGGTTACCCCCTGAGTGGTTCAGACCGTGCGCATGTGCCG
ACTTTTGAAGCGGCTGGAGGCACTGAGGACAGGTGTGATATATGAATGCA
GCAAGTCGAACTACGCTGTATATTGCACCCGACATAGACACTTTTTATCC
ATCGTACTTTTTGTGTAGATAAATTACAAATTACACAAACGATGCCCTTT
TTCTGACTCCGCCTTTGTTCGCGTTCGTCTCTCGCTCTCTCGGTCGCTGT
GTGCGTAACATCATGTCATATGGTGGTGGATGCTTTTGGATGCTTTGGAT
GCTTTTCCTTCTCTCTCAGCCGCTCGGGTTCGAGAACTCGCAGGCCGTTA
TCGTTCCTCTGTTTTTCCTTGTCAGCATCAACCTGCTCTTCAACAACTGG
GCTAAGGACCAGGTGGGCACGATTGTGTACCTACAAGGTTGTACACACAA
TTTCGGCCTCCCCGTATTCTTTCGGTTGCAGTGTATAACTTGGTTTTCTA
GTGACACGCGAAGCCAAAACGACATCAAGCCTCTGATCTTCCGTTGTTTC
CAGCTTATAATGGAAGCGCCGCCGTGGTACACACCATAACACGGCAGCGC
GGTAGTGTAACGAACTCGGGTTGTACTCGGAGTATCCAGTATTCCGCCGC
GAAACCTGGCAACCTGGCCACCACACTACACGCACGAGCAACCGGCAGCT
GTTTAAACAGCCCATATAACTCCAGTGAAAATGCTCACCATCCAACAATC
GTCATGCTTGCCATTGCCATGTTCAACCACTTCCAAGTCAAGAAAGGCTC
GGAATTCCGTTTCTATAACTTGTCCGAGAAATCTGGTAAGTATGTCCTAG
AAAGCGCATCGACCGGTTCACTGCTGTGGAGGGATCGCCTACAAACAATC
GCTTATGCAGCCAACGATCGTATTTGGTGAACCGATCGAATATACATGTT
GATGTTTTGAGGCTACAGCAGCCGCGGCTCTCTGACTCTTGGTTGTGTTG
TGGCGAAGAGCCCACGCTCCTCTTTGAGTTGAGTCATCTGACGTTACACC
CTTGTCCATTCTGGGGATACATCTCCCCCCTTTTCCACTGCGGCGAGTGC
CCCTCAGATCAGTTGGAAAGAGGACGCAACACAGACGAATCTCTGTGGGT
GACGGAAACAATACCTGCCTAACTTTTTCTTGGGGTTGGTGTTTTTCGCG
AGAAGCGTTATCGCCCCGTGTTGGGTATGATACACACCTCTGAGTCATTT
CTCTCAAGCGACGATCTCATCTCAAACGTAGGTCGCACGATTCAAATTTG
GCAAACAGAAACTCTGTCACGAAAGTGTCATTCTTGTAGTGCTGGCAGCA
TCTCAATGCTAGTCGGCTGATGCAGGTCCGCCGGGCCGCCGGGTTTTATA
TTCTGCCTAAATTTCGGGCCTTGCATCCATCCGGTCACCATGTTCCCTAT
TTATTTCTGATTTCTGATTCCCCCATCCCTTCTTACCGATTTTTTTGTTT
TGTCTCGTGTTCGTCCCTCTCTTGTCTCACACTGTCTTGTCTTGCAATGC
AGCCGGAGGGCGACTTCTTCGCCGAGTACGACGAGAGGAGGTAAAATAGC
CCTTTAATCAGCCTTTTCCGTCTCGTGGGAGAGCGTAAGGAGATTCGCGC
AGGAGCAGCGCGCACCGGTAGCGGCGGGGGCAGCGGAGGACGATCCCGCA
TGGCCCCGAAGTGAAAAACCGCGAGAGATGTTCGATTCCGGGGTAGACAG
CTTCTTTGTTTTTTTTCGGCTTTCCACTAGGTGTCCCTAGTTAGAGGAGA
AAAGAGTCGGCCCTTCCCTGGTGTGGATGCCTCCCAGTAGAGCCAGCTTG
TATTTTTGTCTTTGGTTGTAGACTCGGGAAGCAGATCGGGGGAAGATTTT
TGGACTCTAGAAAGGGGGGGGGGTTCGGTGGGCTTGACTTGGCCACCTTT
TAAAAGAGCCGCACGGTTTGTCTGCCGTTTTTCAGCCTCGGCACGGGGTT
AGCGGCGGTCGAGCGCCTGCGGTACGCTCGGAGTTGTTCCTCCTGTTTTT
CGCTGTTGTCCATGTGTCCAGCTGGCGGGGGTTTTGAAGCGGCAGCATCA
GTTTTGAGTCCGGTTGTTGACTGCGTCAGACTGCTTAACATGCCTTCCTC
TTTTCTGTGACAGACGTCACACTCTTTTTTTTTTTTTGGTTTTCGGTAAA
TGATGCGCCTGAAAAGACCGACAAAGCATTATTAAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig97:285868..288703-

>mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous)
ATGAAGTTCCTGGCCTTTTTCATGGTGTGCCTAACGGCAGTAAGCGGGTT
CGTTGCGCCCAGCGCCCCCCGCCTATCCACCTCCGTGCGTCCCGCGACCG
CCGCCGCACCCATGCGCATGGGCCTCAAGGAGGACTTCCAGAAGGCGGCC
ACCACCGCATCGGTGGCAGTCCTCACCGCCGCGCCTGCCTTTGCAACTGA
GGGAACCGGGGAGATGAAGTTCCTGGCCTTTTTCATGGTGTGCCTAACGG
CAGTAAGCGGGTTCGTTGCGCCCAGCGCCCCCCGCCTATCCACCTCCGTG
CGTCCCGCGACCGCCGCCGCACCCATGCGCATGGGCCTCAAGGAGGACTT
CCAGAAGGCGGCCACCACCGCATCGGTGGCAGTCCTCACCGCCGCGCCTG
CCTTTGCAACTGAGGGAACCGGGGAGCCGCTCGGGTTCGAGAACTCGCAG
GCCGTTATCGTTCCTCTGTTTTTCCTTGTCAGCATCAACCTGCTCTTCAA
CAACTGGGCTAAGGACCAGCCGCTCGGGTTCGAGAACTCGCAGGCCGTTA
TCGTTCCTCTGTTTTTCCTTGTCAGCATCAACCTGCTCTTCAACAACTGG
GCTAAGGACCAGCCGGAGGGCGACTTCTTCGCCGAGTACGACGAGAGGAG
GTAACCGGAGGGCGACTTCTTCGCCGAGTACGACGAGAGGAGGTAA
back to top