mRNA_C-linearis_contig97.17082.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17082.1
Unique NamemRNA_C-linearis_contig97.17082.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:281871..282457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size587
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17082.1prot_C-linearis_contig97.17082.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 281972..282427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.335559-UTR-C-linearis_contig97:281870..2819711622930828.335559-UTR-C-linearis_contig97:281870..281971Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 281871..281971 +
1690881270.8031216-UTR-C-linearis_contig97:281870..2819711690881270.8031216-UTR-C-linearis_contig97:281870..281971Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 281871..281971 +
1622930828.3800092-UTR-C-linearis_contig97:282427..2824571622930828.3800092-UTR-C-linearis_contig97:282427..282457Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 282428..282457 +
1690881270.8228228-UTR-C-linearis_contig97:282427..2824571690881270.8228228-UTR-C-linearis_contig97:282427..282457Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 282428..282457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.3576992-CDS-C-linearis_contig97:281971..2824271622930828.3576992-CDS-C-linearis_contig97:281971..282427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 281972..282427 +
1690881270.8129184-CDS-C-linearis_contig97:281971..2824271690881270.8129184-CDS-C-linearis_contig97:281971..282427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 281972..282427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17082.1

>prot_C-linearis_contig97.17082.1 ID=prot_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MEFHTSACTFSVCFAPAVFAVAGATGAAAATAGGARAGPPRRRVQQGHRP
LVNRSRSYIHALSLLLYLTYDVSRAASCCREHDDDVLKKICGVFSSPTPT
PTPTQLSLQLLTFADFALALPCHGVALLSSPATGGLQNRGRGNVPGRRRN
V*
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mRNA from alignment at C-linearis_contig97:281871..282457+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17082.1 ID=mRNA_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=587bp|location=Sequence derived from alignment at C-linearis_contig97:281871..282457+ (Chordaria linearis ClinC8C monoicous)
TCACGCATGCCTTTTGCCAGCAAACCCTTTCGAGATCCTCCCTGGTGATC
CCTCGGCACCGCTCGTACCCGCCGGCGAGGACGAGATGCTTGGGCCCTGC
CATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGCACCGG
CTGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGGCGGGC
GGGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCACCGCCC
GCTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACTGCTGT
ATCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGCACGAC
GATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACACCCAC
ACCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGATTTCG
CGCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCGCAACG
GGAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGGCGGAA
TGTATGATAGTTTCCAGAGGAAGGGGGGGGAAGGGGG
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Coding sequence (CDS) from alignment at C-linearis_contig97:281871..282457+

>mRNA_C-linearis_contig97.17082.1 ID=mRNA_C-linearis_contig97.17082.1|Name=mRNA_C-linearis_contig97.17082.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig97:281871..282457+ (Chordaria linearis ClinC8C monoicous)
ATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGCACCGGC
TGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGGCGGGCG
GGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCACCGCCCG
CTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACTGCTGTA
TCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGCACGACG
ATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACACCCACA
CCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGATTTCGC
GCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCGCAACGG
GAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGGCGGAAT
GTATGAATGGAGTTCCACACCTCGGCCTGCACCTTCTCCGTGTGCTTCGC
ACCGGCTGTCTTTGCCGTTGCTGGTGCGACTGGGGCCGCCGCGGCGACGG
CGGGCGGGGCGAGGGCGGGCCCCCCCCGCCGGCGGGTCCAGCAAGGGCAC
CGCCCGCTGGTAAATCGATCAAGGTCCTATATCCACGCTCTCTCTCTACT
GCTGTATCTGACGTATGACGTATCTCGTGCTGCTAGCTGCTGTCGTGAGC
ACGACGATGATGTCTTGAAAAAAATCTGCGGTGTGTTCTCGTCACCCACA
CCCACACCCACACCCACACAACTCTCGCTGCAACTTTTGACTTTTGCCGA
TTTCGCGCTCGCTCTACCATGCCACGGGGTTGCGCTTTTGAGTTCCCCCG
CAACGGGAGGGTTACAAAATCGCGGGAGGGGGAACGTCCCAGGCCGGAGG
CGGAATGTATGA
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