mRNA_C-linearis_contig96.17049.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17049.1
Unique NamemRNA_C-linearis_contig96.17049.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.060e-21
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQ 135
            SGVTPLHRAAEVNSCQVAQVLINA+ASVN RT+WGWYAPLHFAL+
Sbjct:    9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK 53
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BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: A0A7S4A937_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A937_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.210e-9
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWT--------ILTKRLRTPYDLAVSRGLKLQALRIQ 267
            SG+T LHRAA+V   ++ + L+   A  +A+T  G   PLH A+  GHE+ A  LL+ GA W          +  R  TP   AV +G +L A R++
Sbjct:   34 SGMTLLHRAADVAQVEIIKYLMELGADASAKTFRGGDTPLHLAVSAGHEKAAMALLEGGAPWVPSKQKPKMAVNNRGETPMRTAVRKGYQLMAQRLE 130
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BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: A0A8K1CK32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK32_PYTOL)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   10 TPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWTILT 198
            T LH AAE     +A++LINA A VNAR A GW APLH A  +GH +V ++L+++ A    LT
Sbjct:  312 TALHLAAENGDEDIAELLINAGALVNARNAAGW-APLHIAALDGHLRVVQLLVRSRADIDSLT 373
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4B2_ECTSI2.060e-2191.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4A937_9STRA1.210e-937.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CK32_PYTOL1.040e-549.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:500855..501737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue4.8e-13
Seed eggNOG ortholog4787.PITG_17027T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeat
EggNOG OGs3QFJX@4776,COG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_002030.1
COG Functional cat.M
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.1936905-CDS-C-linearis_contig96:500854..5010081622930826.1936905-CDS-C-linearis_contig96:500854..501008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 500855..501008 -
1690881269.8899102-CDS-C-linearis_contig96:500854..5010081690881269.8899102-CDS-C-linearis_contig96:500854..501008Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 500855..501008 -
1622930826.206459-CDS-C-linearis_contig96:501600..5017371622930826.206459-CDS-C-linearis_contig96:501600..501737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 501601..501737 -
1690881269.915136-CDS-C-linearis_contig96:501600..5017371690881269.915136-CDS-C-linearis_contig96:501600..501737Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 501601..501737 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17049.1prot_C-linearis_contig96.17049.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 500855..501737 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17049.1

>prot_C-linearis_contig96.17049.1 ID=prot_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQ
VAEVLLQAGAKWTILTKRLRTPYDLAVSRGLKLQALRIQDVRHSIAK
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mRNA from alignment at C-linearis_contig96:500855..501737-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=883bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous)
AGCGGGGTCACACCTCTTCACAGAGCGGCCGAAGTCAACAGCTGCCAGGT
TGCGCAGGTACTCATCAACGCGGAGGCGAGCGTGAACGCCAGAACAGCCT
GGGGATGGTACGCCCCGTTGCACTTCGCACTACAAAAGTGAGAGAGCACA
CAGTCATCAGTAGCTTTGCCGGCAAAAATAGACCCGCGATTTCTATTGAT
TTATCGACCACCTTCTAGTTATCAGTAGAACTGTACTTTGTGTTTTGGTC
CACGCTGCGTAATCAGTCTACACTACCCTGTCACGGAGATGTGTATTTGA
TATACTATTGGGAATCTCTGTTAGTATTTGGCCTTATTACGTGGTGAAAG
CGAGGCAAAAAGTGAGTTTGTGTAGACGACCTCGCGTCAAGGGCCTCGTG
TCTTGAAGGTAAGACCACTCCTGACTCGGCGTACAATATTTTTTAACATG
CTTGTTCTGCCAGAGGTTTCCAAATTGAAATTATCGGGATAATAACCAGG
ACGCGGCGAGCAACCAAACCGTATCCGTGTACGTAAGGCCGAAAAACATA
GAATCAACATGTTTCGACGATTCCTCGCATCGCATGCCCCAACAAAGCTC
ATTCCATGCATACCCCTTCCATCCTCTTTCCCTTAAGACGTCCCTCAAAT
TAGTTCGAGGCCAAACTCGTTTGGAACCTGTCGACAAAACCGTCTTCCTC
TCAACGACTCGTGTCGACTACCCAAACAGTGGACACGAGCAAGTGGCCGA
AGTGCTACTGCAGGCAGGTGCCAAGTGGACAATACTCACAAAACGGCTTC
GGACGCCCTACGACCTGGCCGTCTCCCGCGGGTTGAAGCTCCAAGCATTG
AGAATACAGGATGTGAGACACTCCATCGCCAAA
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Coding sequence (CDS) from alignment at C-linearis_contig96:500855..501737-

>mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous)
AGCGGGGTCACACCTCTTCACAGAGCGGCCGAAGTCAACAGCTGCCAGGT
TGCGCAGGTACTCATCAACGCGGAGGCGAGCGTGAACGCCAGAACAGCCT
GGGGATGGTACGCCCCGTTGCACTTCGCACTACAAAAAGCGGGGTCACAC
CTCTTCACAGAGCGGCCGAAGTCAACAGCTGCCAGGTTGCGCAGGTACTC
ATCAACGCGGAGGCGAGCGTGAACGCCAGAACAGCCTGGGGATGGTACGC
CCCGTTGCACTTCGCACTACAAAATGGACACGAGCAAGTGGCCGAAGTGC
TACTGCAGGCAGGTGCCAAGTGGACAATACTCACAAAACGGCTTCGGACG
CCCTACGACCTGGCCGTCTCCCGCGGGTTGAAGCTCCAAGCATTGAGAAT
ACAGGATGTGAGACACTCCATCGCCAAATGGACACGAGCAAGTGGCCGAA
GTGCTACTGCAGGCAGGTGCCAAGTGGACAATACTCACAAAACGGCTTCG
GACGCCCTACGACCTGGCCGTCTCCCGCGGGTTGAAGCTCCAAGCATTGA
GAATACAGGATGTGAGACACTCCATCGCCAAA
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