mRNA_C-linearis_contig96.17038.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: D7G487_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G487_ECTSI) HSP 1 Score: 116 bits (290), Expect = 6.780e-28 Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query: 67 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQGSK 261
MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKT YAVGPCLLFFFLFVV+GSS+FQ+LKAA +K
Sbjct: 1 MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTGYAVGPCLLFFFLFVVLGSSLFQVLKAAGATK 65
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: A0A4D9DDX7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDX7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.290e-9 Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1
Query: 70 SSRKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
+SR TRL SEK +NVT+RG+VP GK ++ + V P LL FF+FVVVGS+ FQI++ AQ
Sbjct: 3 TSRATRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQ 63
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: D0MTV7_PHYIT (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=D0MTV7_PHYIT) HSP 1 Score: 64.3 bits (155), Expect = 1.590e-9 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 79 KTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
K RL SEKHL N+T+RG V + + E+K Y+VGP L+ FFLFV+VGSS+ QIL+ AQ
Sbjct: 6 KMRLRSEKHLANITKRGQVSQPQKEDK--GYSVGPILMGFFLFVLVGSSVIQILRTAQ 61
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: K3WKY6_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WKY6_GLOUD) HSP 1 Score: 64.3 bits (155), Expect = 1.590e-9 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 79 KTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
K RL SEKHL N+T+RG V K E ++ Y VGP LL FF+FV+VGSS+ QIL+ AQ
Sbjct: 6 KMRLRSEKHLANITKRGMV--SKPEKNESGYGVGPVLLGFFVFVLVGSSVIQILRTAQ 61
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: W7U255_9STRA (Endoplasmic reticulum, stress-associated Ramp4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U255_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 3.770e-9 Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 16 SLPVRLHVAQTAPDS--------HIMSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
SL L Q APD ++ +SR RL SEK +NVT+RG+VP GK ++ + V P LL FF+FVVVGS+ FQI++ AQ
Sbjct: 42 SLDSNLAATQQAPDQASSLYTFCNMATSRAIRLRSEKFDKNVTKRGNVPVGKAAKREEAPPVSPVLLGFFVFVVVGSAFFQIIRTAQ 128
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: A0A2D4BJU9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJU9_PYTIN) HSP 1 Score: 62.4 bits (150), Expect = 6.480e-9 Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 85 RLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
RL SEKHL N+T+RG V + + K++ Y VGP LL FF+FV+VGSS+ QIL+ AQ
Sbjct: 2 RLRSEKHLANITKRGLV--SQPDKKESGYTVGPVLLGFFIFVLVGSSVIQILRTAQ 55
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: A0A0N7L5X2_PLAHL (Stress-associated endoplasmic reticulum protein 2-like n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5X2_PLAHL) HSP 1 Score: 61.6 bits (148), Expect = 1.410e-8 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 70 SSRKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
+S + RL SEKHL N+T+RG V + K E+K Y+VGP L FF+FV+VGS++ QIL++AQ
Sbjct: 3 NSLRMRLRSEKHLANITKRGQVSQPKKEDK--GYSVGPILFGFFVFVLVGSALVQILQSAQ 61
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: A0A3M6VCY0_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCY0_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 1.930e-8 Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 79 KTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAA 249
K RL SEKHL N+T+RG V + + E K Y+VGP LL FF+FV+VGSSI QIL+ A
Sbjct: 6 KIRLRSEKHLANITKRGLVSQPEKEEK--GYSVGPLLLGFFVFVLVGSSIIQILRTA 60
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: C5KPS5_PERM5 (Stress associated endoplasmic reticulum protein, putative (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KPS5_PERM5) HSP 1 Score: 60.8 bits (146), Expect = 2.640e-8 Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 76 RKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQ 252
RKT L SE+ QN+ RRG +GK KK Y VGP +L FLFVVVGS++FQI+ AAQ
Sbjct: 4 RKTALRSEQFEQNINRRGKASQGK---KKDKYPVGPWVLGLFLFVVVGSAVFQIIAAAQ 59
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Match: F0X1E0_9STRA (Uncharacterized protein AlNc14C604G12231 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X1E0_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 2.640e-8 Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 79 KTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVGSSIFQILKAAQGS 258
K RL SEKHL NV +RG+V + + ++ +GP LL FF+FV+VGSSI QIL+AAQ +
Sbjct: 6 KARLRSEKHLANVKKRGNV--SQANKGERTFPIGPVLLGFFIFVIVGSSIMQILRAAQSA 63 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17038.1 >prot_C-linearis_contig96.17038.1 ID=prot_C-linearis_contig96.17038.1|Name=mRNA_C-linearis_contig96.17038.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=66bp MSSRKTRLASEKHLQNVTRRGSVPKGKIENKKTSYAVGPCLLFFFLFVVVback to top mRNA from alignment at C-linearis_contig96:316712..320743+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17038.1 ID=mRNA_C-linearis_contig96.17038.1|Name=mRNA_C-linearis_contig96.17038.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4032bp|location=Sequence derived from alignment at C-linearis_contig96:316712..320743+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:316712..320743+ >mRNA_C-linearis_contig96.17038.1 ID=mRNA_C-linearis_contig96.17038.1|Name=mRNA_C-linearis_contig96.17038.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at C-linearis_contig96:316712..320743+ (Chordaria linearis ClinC8C monoicous)back to top |