mRNA_C-linearis_contig96.17028.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17028.1
Unique NamemRNA_C-linearis_contig96.17028.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 263 bits (672), Expect = 3.590e-86
Identity = 142/214 (66.36%), Postives = 165/214 (77.10%), Query Frame = 1 
Query:    1 PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
            PLLWSL  RQCQL SL+PVAGLLHHL+G++GL +H + GL LAGVERVLADARCL TLTI  C LA LPRLQSGSIE+LD+S+N +ESA+GLE LFRLKELNLAGN I TL+ LRPL+ LG G LREL+LD NPV+N P RYRESV  + PSIQLLDG+A ++ WR    T  NT G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:    4 PLLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVG-EEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAG 215
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 5.830e-83
Identity = 139/213 (65.26%), Postives = 164/213 (77.00%), Query Frame = 1 
Query:    4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDGYFSDGAACVSRRAG 642
            LLWSL  RQCQL SL+PVAGLLHHL+G++GL +H   GLALAG+ERVLADARCL TLTI  CGLA LPRLQSGSIE+LD S+N +ESA+GLE LFRL+ELNLAGN I TL+DLRPL+ LG G LREL+L+ NPV++ P RYRESV  + PSIQLLDG+A ++ WR    T  N  G + G     C+T PRVR+   +GYFSDGA   SRRAG
Sbjct:   89 LLWSLTFRQCQLESLLPVAGLLHHLDGLIGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAG-EEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAG 299
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: A0A0L0SBP9_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SBP9_ALLM3)

HSP 1 Score: 57.0 bits (136), Expect = 6.240e-6
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1 
Query:    4 LLWSLIIRQCQLSSLIPVAGLLHHLEGMMG----LRVHEVAGLALAGVERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
            L+ SL +R CQL+++ P+A L H  E  +G     R+ ++A L L    RVL DA C +   +       +P      +  L+LS N+L S   +  L R+ EL LA N+++    +  L  L A  L  L L  N        YR  V   +P IQ+LDGVA+T
Sbjct:  576 LVTSLSLRNCQLTTVSPLADLAHLEELFIGGNRLTRIDDLAHLPL----RVL-DASCNAITAV------DVPARAFAKLTHLNLSSNRLTSLDMVRTLPRVTELYLAHNHVTDSGHMNALAVLPA--LHVLDLTGNAFIGAVPHYRAYVIYCVPLIQVLDGVAVT 727
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: R7VI33_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VI33_CAPTE)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-5
Identity = 42/131 (32.06%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  136 ERVLADARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAITRT-------WRAGK 507
            E++L D R LS L              S S+++L+++ N+L+S   L  L  L + ++A N +S + +L   ++      R L L  NPV N  S+YR+ V  + PS+++LDG  IT T       W+A K
Sbjct:  135 EKLLFDPRSLSAL--------------SRSLQVLNVTGNRLDSLQDLFSLTELMQFSVADNQLSDIKELAHFLTSNRHLWR-LDLSGNPVCN-KSKYRDRVIIMSPSLEVLDGKEITDTARQFLTSWQANK 249
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00186483C2 (geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI00186483C2)

HSP 1 Score: 54.3 bits (129), Expect = 4.480e-5
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:  226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSI 459
            +E+L++ DN +E+  GL  L RL+EL+L  N IS L++L+PL S     L  L L  NPV   P+   E +A LLPS+
Sbjct:  503 LEVLEVDDNAIETLPGLYHLPRLEELSLRNNQISRLSELKPLSSCPK--LTRLDLRGNPVTQTPNLQSE-LAELLPSV 577
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BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Match: UPI00106C733E (leucine-rich repeat and guanylate kinase domain-containing protein-like isoform X1 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C733E)

HSP 1 Score: 53.9 bits (128), Expect = 6.480e-5
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:  226 IEILDLSDNKLESASGLEMLFRLKELNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLLPSIQLLDGVAIT 486
            +++LDLS N + S  GL+    L+E+NL GN I  + ++R +  L    LR+L+  RNP++ + S YR S+   L +++ LDGV +T
Sbjct:  245 LKVLDLSCNYIRSLKGLQEHEFLQEINLEGNQIIDIAEIRYIRELRL--LRKLNFQRNPIQEM-SDYRLSILFRLQTLKNLDGVDVT 328
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G481_ECTSI3.590e-8666.36Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE5.830e-8365.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0L0SBP9_ALLM36.240e-633.94Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]
R7VI33_CAPTE1.150e-532.06Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
UPI00186483C24.480e-543.59geranylgeranyl transferase type-2 subunit alpha n=... [more]
UPI00106C733E6.480e-537.93leucine-rich repeat and guanylate kinase domain-co... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:150670..152018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size642
Cds size642
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17028.1prot_C-linearis_contig96.17028.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 150670..152018 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.8079183-CDS-C-linearis_contig96:150669..1510881622930821.8079183-CDS-C-linearis_contig96:150669..151088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 150670..151088 +
1690881267.3725138-CDS-C-linearis_contig96:150669..1510881690881267.3725138-CDS-C-linearis_contig96:150669..151088Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 150670..151088 +
1622930821.8239658-CDS-C-linearis_contig96:151418..1515261622930821.8239658-CDS-C-linearis_contig96:151418..151526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 151419..151526 +
1690881267.3833306-CDS-C-linearis_contig96:151418..1515261690881267.3833306-CDS-C-linearis_contig96:151418..151526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 151419..151526 +
1622930821.8449256-CDS-C-linearis_contig96:151903..1520181622930821.8449256-CDS-C-linearis_contig96:151903..152018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 151904..152018 +
1690881267.3932526-CDS-C-linearis_contig96:151903..1520181690881267.3932526-CDS-C-linearis_contig96:151903..152018Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 151904..152018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17028.1

>prot_C-linearis_contig96.17028.1 ID=prot_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=214bp
PLLWSLIIRQCQLSSLIPVAGLLHHLEGMMGLRVHEVAGLALAGVERVLA
DARCLSTLTICKCGLAYLPRLQSGSIEILDLSDNKLESASGLEMLFRLKE
LNLAGNNISTLTDLRPLISLGAGCLRELSLDRNPVKNIPSRYRESVATLL
PSIQLLDGVAITRTWRAGKTTDNNTTGGKRGCTILECTTRPRVRDGPVDG
YFSDGAACVSRRAG
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mRNA from alignment at C-linearis_contig96:150670..152018+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1349bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTGTGGTCTTTGATCATCCGACAGTGCCAGCTATCCTCCCTTAT
CCCGGTCGCAGGGCTGCTGCACCATTTAGAAGGCATGATGGGGCTGCGAG
TTCACGAGGTAGCTGGGCTGGCGCTTGCGGGGGTGGAACGCGTGCTGGCC
GACGCACGGTGTCTAAGCACACTCACAATTTGCAAGTGCGGTCTGGCATA
CCTACCTCGTCTCCAGAGCGGATCAATCGAGATTCTTGACTTGAGCGACA
ACAAACTTGAAAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTAAAAGAG
CTGAATCTCGCGGGGAACAACATAAGCACGCTGACAGATCTAAGGCCATT
GATTTCGCTGGGAGCTGGCTGTCTTCGGGAGTTGAGCTTGGACAGGAACC
CTGTGAAAAATATCCCGAGGTACGAACATGGTAAAGGTTATCGTGTTGGT
CCCCGAGGTATGGAGGAGGTACTGCTGTAAGTCTTTGTGCACGGGAACAC
GAATTACGCAGATGTGACGTCCTATCAAGCGGTTAGGCGGCATGCGGGTA
GCTTGAGTTGCATCAGTCTTTACAATCTCACGTTGGGCTCGTAGCTTTTC
TGATTGGCAACCAAACCCCACGCCTGAGGGTGTCGTTGCTGGGGTAGGTA
AGCGTTCTCCACCACTCCCTCTTCCTCCCCCAAACCTACTCGGCAGCATA
CTTGTTAACGCCTACTCCGTACACCCGTTTGTATTGCTTCTTATCTGAGC
AGATATAGGGAATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGA
CGGGGTCGCCATAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATA
ATACCACGTGAGAGCACCTTGCCCTCGAAAGAATTTCTTGTTTCATGCCA
CAAGCAGTCTGCATGCTTGCGATGTTTGCACTTCGACGTCAGTAAGTGGG
ATGAGCGAGTTGGATCGTGATTCTCTTTGATGAAGTGTATAGCAAACTTG
GTGCTCGGCACAACTAGCCTAGTTCTTCATTGGCTTGTCTACCACCAACG
GCCGAATACACGTCCACCCGATAGTATTCGGTGCCACCGTTCACAGCATC
AAGTAGCTGCTCAAGAGGGAGCCGTCCTCTGAGAGCATGGGAGGGGCAGG
GACCCTATTTGACCTTTGGAGCAGACTTTCCGTGGAGATACGAAACCATC
CCACTCAACACAACCACGTCCAACCAATTATCAGGGGAGGCAAACGAGGT
TGCACTATACTTGAGTGCACTACACGGCCGAGGGTTAGGGATGGGCCTGT
CGACGGATACTTTAGCGACGGTGCGGCTTGCGTATCGAGACGAGCAGGT
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Coding sequence (CDS) from alignment at C-linearis_contig96:150670..152018+

>mRNA_C-linearis_contig96.17028.1 ID=mRNA_C-linearis_contig96.17028.1|Name=mRNA_C-linearis_contig96.17028.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at C-linearis_contig96:150670..152018+ (Chordaria linearis ClinC8C monoicous)
CCGCTGTTGTGGTCTTTGATCATCCGACAGTGCCAGCTATCCTCCCTTAT
CCCGGTCGCAGGGCTGCTGCACCATTTAGAAGGCATGATGGGGCTGCGAG
TTCACGAGGTAGCTGGGCTGGCGCTTGCGGGGGTGGAACGCGTGCTGGCC
GACGCACGGTGTCTAAGCACACTCACAATTTGCAAGTGCGGTCTGGCATA
CCTACCTCGTCTCCAGAGCGGATCAATCGAGATTCTTGACTTGAGCGACA
ACAAACTTGAAAGTGCCAGCGGGCTGGAGATGCTATTTCGCCTAAAAGAG
CTGAATCTCGCGGGGAACAACATAAGCACGCTGACAGATCTAAGGCCATT
GATTTCGCTGGGAGCTGGCTGTCTTCGGGAGTTGAGCTTGGACAGGAACC
CTGTGAAAAATATCCCGAGCCGCTGTTGTGGTCTTTGATCATCCGACAGT
GCCAGCTATCCTCCCTTATCCCGGTCGCAGGGCTGCTGCACCATTTAGAA
GGCATGATGGGGCTGCGAGTTCACGAGGTAGCTGGGCTGGCGCTTGCGGG
GGTGGAACGCGTGCTGGCCGACGCACGGTGTCTAAGCACACTCACAATTT
GCAAGTGCGGTCTGGCATACCTACCTCGTCTCCAGAGCGGATCAATCGAG
ATTCTTGACTTGAGCGACAACAAACTTGAAAGTGCCAGCGGGCTGGAGAT
GCTATTTCGCCTAAAAGAGCTGAATCTCGCGGGGAACAACATAAGCACGC
TGACAGATCTAAGGCCATTGATTTCGCTGGGAGCTGGCTGTCTTCGGGAG
TTGAGCTTGGACAGGAACCCTGTGAAAAATATCCCGAGCAGATATAGGGA
ATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGACGGGGTCGCCA
TAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATAATACCACCAGA
TATAGGGAATCGGTGGCAACCCTGCTCCCATCCATCCAGCTTCTCGACGG
GGTCGCCATAACTCGGACTTGGCGGGCTGGCAAGACCACGGACAATAATA
CCACGGGAGGCAAACGAGGTTGCACTATACTTGAGTGCACTACACGGCCG
AGGGTTAGGGATGGGCCTGTCGACGGATACTTTAGCGACGGTGCGGCTTG
CGTATCGAGACGAGCAGGTGGGAGGCAAACGAGGTTGCACTATACTTGAG
TGCACTACACGGCCGAGGGTTAGGGATGGGCCTGTCGACGGATACTTTAG
CGACGGTGCGGCTTGCGTATCGAGACGAGCAGGT
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