mRNA_C-linearis_contig96.17023.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17023.1
Unique NamemRNA_C-linearis_contig96.17023.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17023.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 4.780e-42
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGRD 279
            +S RKF+AGNPLWPCPS +C  G LK V K+NGG F+PCDQK+S+D +TCQVSC++L+ R SDP +C+LCL++VGGTPSLGV SG+K SQGRD
Sbjct:   16 TSKRKFIAGNPLWPCPSIVCVPGLLKAVPKTNGGLFSPCDQKDSQDSTTCQVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRD 108
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BLAST of mRNA_C-linearis_contig96.17023.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.650e-35
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 SSTRKFMAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTVLTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGR 276
            SS RKF+AGNPLWPCPS+ C  G LK++ K+ GG F PCDQK+S D +TCQVSC+ L+ R  +P  CELCL+ VGGTPSLGV SG+KT QGR
Sbjct:   17 SSKRKFLAGNPLWPCPSNYCD-GLLKKIPKTKGGFFTPCDQKQSNDPNTCQVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGR 107
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE4.780e-4267.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE6.650e-3565.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:111522..111800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog2880.D7G4Z8
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size280
Cds size261
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.325399-UTR-C-linearis_contig96:111521..1115391622930821.325399-UTR-C-linearis_contig96:111521..111539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 111522..111539 +
1690881267.1392376-UTR-C-linearis_contig96:111521..1115391690881267.1392376-UTR-C-linearis_contig96:111521..111539Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 111522..111539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.3429482-CDS-C-linearis_contig96:111539..1118001622930821.3429482-CDS-C-linearis_contig96:111539..111800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 111540..111800 +
1690881267.1509888-CDS-C-linearis_contig96:111539..1118001690881267.1509888-CDS-C-linearis_contig96:111539..111800Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 111540..111800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17023.1prot_C-linearis_contig96.17023.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 111540..111800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17023.1

>prot_C-linearis_contig96.17023.1 ID=prot_C-linearis_contig96.17023.1|Name=mRNA_C-linearis_contig96.17023.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MAGNPLWPCPSDICAVGFLKEVAKSNGGTFAPCDQKESKDDSTCQVSCTV
LTVRNSDPALCELCLSAVGGTPSLGVTSGKKTSQGRD
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mRNA from alignment at C-linearis_contig96:111522..111800+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17023.1 ID=mRNA_C-linearis_contig96.17023.1|Name=mRNA_C-linearis_contig96.17023.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig96:111522..111800+ (Chordaria linearis ClinC8C monoicous)
TCTTCCACTCGGAAGTTTATGGCCGGCAACCCTCTTTGGCCGTGCCCAAG
CGATATCTGCGCTGTCGGATTTTTGAAAGAGGTCGCCAAGTCCAACGGCG
GCACATTTGCGCCCTGCGACCAAAAGGAGTCCAAGGACGACTCCACCTGC
CAGGTGTCCTGCACGGTGCTGACCGTGCGCAACTCCGATCCAGCTCTCTG
TGAGCTGTGCCTTTCCGCCGTGGGAGGAACGCCGTCTCTCGGAGTCACTT
CCGGCAAGAAGACCTCCCAGGGTCGCGAC
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Coding sequence (CDS) from alignment at C-linearis_contig96:111522..111800+

>mRNA_C-linearis_contig96.17023.1 ID=mRNA_C-linearis_contig96.17023.1|Name=mRNA_C-linearis_contig96.17023.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig96:111522..111800+ (Chordaria linearis ClinC8C monoicous)
ATGGCCGGCAACCCTCTTTGGCCGTGCCCAAGCGATATCTGCGCTGTCGG
ATTTTTGAAAGAGGTCGCCAAGTCCAACGGCGGCACATTTGCGCCCTGCG
ACCAAAAGGAGTCCAAGGACGACTCCACCTGCCAGGTGTCCTGCACGGTG
CTGACCGTGCGCAACTCCGATCCAGCTCTCTGTGAGCTGTGCCTTTCCGC
CGTGGGAGGAACGCCGTCTCTCGGAGTCACTTCCGGCAAGAAGACCTCCC
AGGGTCGCGACATGGCCGGCAACCCTCTTTGGCCGTGCCCAAGCGATATC
TGCGCTGTCGGATTTTTGAAAGAGGTCGCCAAGTCCAACGGCGGCACATT
TGCGCCCTGCGACCAAAAGGAGTCCAAGGACGACTCCACCTGCCAGGTGT
CCTGCACGGTGCTGACCGTGCGCAACTCCGATCCAGCTCTCTGTGAGCTG
TGCCTTTCCGCCGTGGGAGGAACGCCGTCTCTCGGAGTCACTTCCGGCAA
GAAGACCTCCCAGGGTCGCGAC
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