mRNA_C-linearis_contig95.16986.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16986.1
Unique NamemRNA_C-linearis_contig95.16986.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 7.390e-152
Identity = 239/303 (78.88%), Postives = 252/303 (83.17%), Query Frame = 1 
Query:    1 MKTAVAVAACWVVGVQAFVQGGMAXXXXXXXXXXXXXXXXXXXXXXXXXRMSLLEGE---PAAFSRSEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
            MKTAVAVAACW  G+ AF+  G+                          RM + + E    +A SRSEAL   GAA LGAVVVG GVPAPASAGSVAEANKRLS++NLPPVVDVPGGFNTLLEGYG DGALKNSLGSSNR PILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSL+GGSSLSSK+ MEGV+KKALSQKG+NQFQSFKLKSVKDG TDFNGNKYYIADFQYELLTGAGFTVERKGVASV Q+GNSV AVVGATTANRAKTVKPQLQEIA SFRVYEGKFD
Sbjct:    1 MKTAVAVAACWAGGINAFITPGVPVVPVSARQASSSSGRVAATT-----RMGVSDREGLASSACSRSEALSTFGAAVLGAVVVGTGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEGKFD 298
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.600e-60
Identity = 120/242 (49.59%), Postives = 154/242 (63.64%), Query Frame = 1 
Query:  172 PAAFSRSEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSS--KEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
            P   SR +A+    AA   AV++    P PASA  +   N RL+ + LP V   P G   LLE YG D          NR  +LVTWNYP GWI QRP+ DTN E GTV+TGDY +GDSA L V P  ++GG  LS+  K ++E +V ++++QKG NQ Q+FKLK V +GAT   G +Y   +F+Y+LLTGAGF VER G  S+ QVG  V +V+  TTA R K ++P+LQEIATSFRVY+G
Sbjct:   50 PQQVSRRQAMVAASAAIAAAVLMQE--PQPASALGLKAVNARLADYGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGATGAKGQQYINVEFKYDLLTGAGFIVERVGYGSLTQVGKGVQSVMAVTTAARLKKLQPKLQEIATSFRVYDG 280
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.040e-47
Identity = 100/224 (44.64%), Postives = 135/224 (60.27%), Query Frame = 1 
Query:  226 GAVVVG--AGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
            G ++VG  AGV  PA A  +++ N  L+ + LPP++DVPGGF+ L+E YG     K       R  +LV + YP  W+V +P+ D N E GT+S GDY +GDSA  +V      G     S +    VV +A+ QK  N +Q+FK+   + GA   NG +Y I +F+YELLTGAGFTV+RKGVASV QVG +V  +  ATTA R K +      +A SFRVY+G
Sbjct:    4 GPLLVGGKAGVVQPAQAAGLSKVNGELASYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 222
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.790e-47
Identity = 101/224 (45.09%), Postives = 136/224 (60.71%), Query Frame = 1 
Query:  226 GAVVVG--AGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
            G ++VG  AGV  PA A  +++ N  L+ + LPP++DVPGGF+ L+E YG     K       R  +LV + YP  W+V +P+ D N E GT+S GDY +GDSA  +V      G     S +    VVK+A+ QK  N +Q+FK+   + GA   NG +Y I +F+YELLTGAGFTV+RKGVASV QVG +V  +  ATTA R K +      +A SFRVY+G
Sbjct:   95 GPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7S2V7M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7M0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.820e-45
Identity = 100/242 (41.32%), Postives = 147/242 (60.74%), Query Frame = 1 
Query:  184 SRSEAL---GRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVV-DVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSS-KEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGK 894
            SR EA+   G+   A + A V+G+  P  A A S+ EAN  L+ + + P   +VP GF+ L+E +G DG          R P L+++ YP  W++Q+P+  TN E+GT + G+Y +GDSA ++V P  + G   ++  K+ +  +V   L+QKG+NQ+Q+FK   +  GAT   G KYY+ DF+YELLTGAGF ++R+GVA+V     +V A+V ATT  R K +   L  IA SFR Y+GK
Sbjct:   58 SRREAIINAGQAAGAIMIAGVLGSS-PQSAEAKSIKEANNELTNYGVSPFEGNVPQGFSPLVEVWGKDGI---------RPPYLISFLYPALWVIQKPSMTTNGESGTYAAGNYQKGDSAAVYVGPSEVDGNDVMAKGKDYISSIVLGGLTQKGENQYQNFKTTKIVAGATGLKGQKYYVVDFKYELLTGAGFYIDRRGVAAVTGTPKNVQAIVCATTDTRYKKLADDLHVIADSFRAYDGK 289
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN)

HSP 1 Score: 164 bits (416), Expect = 2.690e-44
Identity = 100/249 (40.16%), Postives = 152/249 (61.04%), Query Frame = 1 
Query:  154 SLLEGEPAAFSRSEALGRIGAAFLGAVVVGAGV----PAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYE 888
            SL   +  A +   ++ R GA   GA +V AG+    PAPA A  +A+ N++L +  LPPV  +P GF+ +L     D +L            +V +N+P  W+V +P+ +TN E+GTVS GDYG+GDSA L+V+     G  +  +K + +G     L+QKGDNQFQ+F++++V  G+ +       + DF+YELLTGAGFTVER+GVA+V+ V     A++  TT+ R K ++P+L++I  SFRVY+
Sbjct:   13 SLAPTQSRAPAPGPSVARRGALAGGASLVAAGLVSLAPAPALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGGDKAFYAKLIAKG-----LAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYD 238
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A6U3V0C4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V0C4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 4.250e-42
Identity = 89/225 (39.56%), Postives = 132/225 (58.67%), Query Frame = 1 
Query:  214 AAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKS-LMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVY 885
            A  +G+  +    PA A  G +   N +L+ + LPP+ +VP GF+ L+E YG            NR P+LV++ +P  WIV  P+ D N E GT+  G+Y +GD+A  ++ P S  +   S   K+  +  + +A+SQKGD+ +Q FK+  V+    D+N  +Y I DF+Y LLTGAGF V+R+GVASV   GN+V  +  A+T  R K ++  L+ IA SFRVY
Sbjct:   45 AGVVGSTFLQTAEPANAFGGGLKTCNAKLASYGLPPIANVPSGFSPLVEVYGK---------GRNRTPLLVSFVHPLDWIVTLPSQDVNGEDGTIQAGEYAKGDTATFYILPDSGKVDNISEQPKDFFKNAISRAISQKGDSIYQDFKITKVEPVKGDYNNQQYVICDFKYTLLTGAGFEVDRQGVASVTSEGNAVEVLWTASTRQRYKKLEEGLRSIAGSFRVY 260
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7S4MBN6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBN6_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.250e-40
Identity = 92/238 (38.66%), Postives = 137/238 (57.56%), Query Frame = 1 
Query:  190 SEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPK-SLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
            S A    GAA   + + G   PA A  G + + N +L+   LP +  +P GF+ L E +G           +NR P+LV + +P  W+V  P+ D N E GT+  G+YG+GD++  FV  +   +   +   K   E V++KA+SQK  N +Q+FK+K+++    ++    Y I DFQY+L+TGAGF V+RK VASV   GN+V A+  A+TA R K ++P L++IA SFRVY    D
Sbjct:   49 SNAAAVAGAAMTSSFLQGPTEPALALGGGIKKVNAKLASLGLPEMKKLPDGFSPLCELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTIQAGEYGKGDTSTFFVYEEPGNVADIASQPKSFFEDVLQKAISQKSANIYQNFKVKNIQPTKGEYKDQTYVIVDFQYQLVTGAGFEVDRKAVASVTSQGNAVEALWCASTAIRYKKMEPALRDIAGSFRVYSDGLD 277
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7R9WJF7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJF7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.150e-40
Identity = 99/251 (39.44%), Postives = 142/251 (56.57%), Query Frame = 1 
Query:  160 LEGEPAAFSRSEALGRIGAAFLGAVVVGA---GVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFV-APKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
            L  E    SR    G +GAA  GAV   +   G  APA A  +++ N +L    LP +  VP GF+ LLE +G           +NR P+LV + +P  W+V  P+ D N E GTV  G+YG+GD+A  FV   +  +   +   K   E V++KA+SQK  N +Q+FK+ +++     +    Y I DF+Y+L+TGAGF V+RK VASV   G +V A+  A+TA R K ++P L++IA+SFRVY    D
Sbjct:   37 LYNEVPTASRRRFFGTVGAA-AGAVATSSLLQGPVAPAHAAKLSKVNAKLEALGLPAMGKVPDGFSPLLELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTVQAGEYGKGDTATFFVYEDEGNVADIASQPKSFFENVLQKAISQKSANIYQNFKVTNIQPTKGGYQDQTYMIVDFKYQLVTGAGFEVDRKAVASVTSQGKAVEALWCASTAVRYKKLEPALRDIASSFRVYSDGLD 277
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BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7R9ZTM7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTM7_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.470e-39
Identity = 97/247 (39.27%), Postives = 137/247 (55.47%), Query Frame = 1 
Query:  178 AFSRSEALGRIGAAFLGAVVVGAGV--PAPASAGSVAE-ANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFV-APKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSV--KDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
            A SR + L    A +  A +   GV  P PA+A S A+  N +L  F LPP+  V  G   LLE YG            NR P+LV  N+P  W+VQ P+ D N E GT+  G+Y +GD+A  ++   +  +     + K + E  +  A+SQKG N +Q+FK+  V  + G  D+NG  Y + DF+YELLTGAGF V+R+GVAS+   G +V  +  A+T  R K  +PQL++I  SFRV+    D
Sbjct:   42 AESRRKFLSNSFATYSAAALASTGVLAPLPANAASAADKVNAKLRAFGLPPINKVANGMKPLLEVYGK---------GKNRFPLLVLMNHPLTWVVQLPSNDVNGEDGTIQAGEYAKGDTATFYLYQEEGHVNDIGNAPKSLFEKALIGAISQKGANVYQNFKVTKVNPQTGNPDYNGKDYVLCDFKYELLTGAGFEVDRRGVASITSDGAAVEVLWAASTRERFKKTEPQLRDIVESFRVFGDGID 279
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLI1_ECTSI7.390e-15278.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8Y2_9STRA2.600e-6049.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9DCV0_9STRA1.040e-4744.64Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TXP4_9STRA1.790e-4745.09Uncharacterized protein n=3 Tax=Nannochloropsis ga... [more]
A0A7S2V7M0_9STRA1.820e-4541.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YP05_AURAN2.690e-4440.16Expressed protein n=1 Tax=Aureococcus anophageffer... [more]
A0A6U3V0C4_9STRA4.250e-4239.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4MBN6_9STRA2.250e-4038.66Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9WJF7_9STRA3.150e-4039.44Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7R9ZTM7_9STRA1.470e-3939.27Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:354806..360718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score444.1
Seed ortholog evalue5.1e-122
Seed eggNOG ortholog2880.D8LLI1
Hectar predicted targeting categorychloroplast
EggNOG OGs2C1GZ@1,2S4FV@2759
Ec32 ortholog descriptionMog1/PsbP, alpha/beta/alpha sandwich
Ec32 orthologEc-22_001060.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1349
Cds size903
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.3509958-UTR-C-linearis_contig95:354805..3552511622930815.3509958-UTR-C-linearis_contig95:354805..355251Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 354806..355251 -
1690881264.268462-UTR-C-linearis_contig95:354805..3552511690881264.268462-UTR-C-linearis_contig95:354805..355251Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 354806..355251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930815.3670242-CDS-C-linearis_contig95:355251..3553711622930815.3670242-CDS-C-linearis_contig95:355251..355371Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 355252..355371 -
1690881264.282602-CDS-C-linearis_contig95:355251..3553711690881264.282602-CDS-C-linearis_contig95:355251..355371Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 355252..355371 -
1622930815.3802438-CDS-C-linearis_contig95:355626..3557261622930815.3802438-CDS-C-linearis_contig95:355626..355726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 355627..355726 -
1690881264.2921722-CDS-C-linearis_contig95:355626..3557261690881264.2921722-CDS-C-linearis_contig95:355626..355726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 355627..355726 -
1622930815.3961759-CDS-C-linearis_contig95:356197..3562531622930815.3961759-CDS-C-linearis_contig95:356197..356253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 356198..356253 -
1690881264.30129-CDS-C-linearis_contig95:356197..3562531690881264.30129-CDS-C-linearis_contig95:356197..356253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 356198..356253 -
1622930815.4156349-CDS-C-linearis_contig95:356687..3567961622930815.4156349-CDS-C-linearis_contig95:356687..356796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 356688..356796 -
1690881264.3103719-CDS-C-linearis_contig95:356687..3567961690881264.3103719-CDS-C-linearis_contig95:356687..356796Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 356688..356796 -
1622930815.4342933-CDS-C-linearis_contig95:357710..3577971622930815.4342933-CDS-C-linearis_contig95:357710..357797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 357711..357797 -
1690881264.3197982-CDS-C-linearis_contig95:357710..3577971690881264.3197982-CDS-C-linearis_contig95:357710..357797Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 357711..357797 -
1622930815.4533691-CDS-C-linearis_contig95:358347..3584731622930815.4533691-CDS-C-linearis_contig95:358347..358473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 358348..358473 -
1690881264.3307967-CDS-C-linearis_contig95:358347..3584731690881264.3307967-CDS-C-linearis_contig95:358347..358473Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 358348..358473 -
1622930815.4693713-CDS-C-linearis_contig95:359158..3594061622930815.4693713-CDS-C-linearis_contig95:359158..359406Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 359159..359406 -
1690881264.3443487-CDS-C-linearis_contig95:359158..3594061690881264.3443487-CDS-C-linearis_contig95:359158..359406Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 359159..359406 -
1622930815.484374-CDS-C-linearis_contig95:360661..3607181622930815.484374-CDS-C-linearis_contig95:360661..360718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 360662..360718 -
1690881264.3567138-CDS-C-linearis_contig95:360661..3607181690881264.3567138-CDS-C-linearis_contig95:360661..360718Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 360662..360718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16986.1prot_C-linearis_contig95.16986.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 355252..360718 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16986.1

>prot_C-linearis_contig95.16986.1 ID=prot_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=301bp
MKTAVAVAACWVVGVQAFVQGGMAAAAAAAAATTTSAAAAAAAATTTTTR
MSLLEGEPAAFSRSEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRL
SQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGW
IVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEG
VVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFT
VERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD
*
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mRNA from alignment at C-linearis_contig95:354806..360718-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16986.1 ID=mRNA_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5913bp|location=Sequence derived from alignment at C-linearis_contig95:354806..360718- (Chordaria linearis ClinC8C monoicous)
ATGAAGACGGCCGTGGCGGTAGCAGCTTGCTGGGTGGTTGGTGTCCAGGC
GTTCGTCGTCCCTGCTGGGCCGATGACATCGGCGTCACCGCTACAGGTAT
ATGACGCAAAAAAACAGCCGTGGTTTGTCTAGACAAGACGAACGACCCCA
GAAACATGAGCACACACCTATCCGCCGCTTTTGTTGACGCCCCTCCCAAC
GTTGCACCATCTATCTGTAGAAGACGAGCGTTGCAATGCCTGGTAGGAAG
GTATAGGACAAGCCAGCAGGCGCTCCAACCTTATCGAAAGCAGACAGGCA
GGAGGAAAACGCTTGGAGTACTACACGTGCAGCAGCTGCTCGCGGGAAAC
GGATTTCTGCAACGTATGTGTTGCAATGTTCGTGCGTGCAGTCAGAGCCG
GTCGACACCTTGTGATGGTTGACACGCGTGAGAGAAAGAGGCCCTGCTCC
TGGCCAAAACAACTCCATCGATCGAAAGGGTGCCCCAGCAAAGCATAATT
CCGACGATGCCGATATTTAGAAATGCACTGCATTTTGACCCCCGTGGAAC
ACAGCAGCAGTTACGAGTCAGACACATGCGGCGCGACACACACACCCCAC
CTCCCGCGGGATGCGGAGTGGAGTGCCTCCCCTCTACCTATTTCGTGCTG
CAACGTTGCTCGGCATATTCGTTTGAGCATGTAGCTTTCTTCCCGGAGAA
GGAGACAGAGAGATATATCATAGTTCATTGTGTTCGTGGTGTGTAATGGG
TAACCGTCCTCGGCTTTATGACGCTAGATATCACCCCCATGTCTCGAGCC
TTGAACGTTGTGGTGACCCTTGGTTTCGATACATCACTGGAATCTTGGCA
TGTGTGTCGATCTCCAACAGGTTGAGGGCAGCCAGATAGTACGTCAGAAA
AGTTATTGTCAGAGAGGAGTTTTCCCTTCAATATTGTACCCACACAGCAG
TAAGTTTGGGCGAAGACGCTTTGACGGTTTCAAAGACCAACAAAAGCAAT
GAGCAGGAGGAGGGCGCGTGATTTCCCAACCCTTGTACCGCGGACATAAC
GTGAAAATTCCCGTGCGGGTTGCGCGTTCGGGCTGTTTCAGCGTCAACGC
ACAGCTCCGATGAGTGTTGCCTAAAATTGCATTATAGCAAGTACGTGCTC
CAGGTGGGTTAAGCACCAGCGCCCCGTACACGCACCCACCCTCCTCGCTT
CCTGCGGCCCTTCGCATGAACTCTTAGTCCCTGCCCCTCCCCCCCCCGCG
CGCGCGCGCCACCTTGCACGCCCGCGCCCCACCTTCGCTGCTGTTGGCAT
TTCGTTCCAAAGCAGGGAGGAATGGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAACAACATCAGCAGCAGCAGCAGCCGCAGCGGCAACAACAACAACAA
CAAGGATGAGCCTCCTGGAAGGAGAGCCGGCCGCCTTCTCGCGCTCGGAG
GCCCTGGGCAGGATAGGCGCGGCTTTCCTTGGCGCGGTTGTGGTCGGCGC
CGGCGTGCCTGCTCCTGCGTCGGCTGGGTCCGTCGCCGAGGCCAACAAGA
GGCTCAGCCAGTGAGTTTGTTGCATCTTGGATCTTGGATCTTGGATTTAT
GGTTCGGGGTTCGGAGAGTCTGATCGGTCGGGCCGAAACATATCTCGAGC
CGGTCGTGTTAGATGCTGCTAGGCCACTACATGTACGATTGATGGTTGCG
GCGTGTGGTGGTGGCGTCCTTTGTTGATGACGTCGTCTGTTGCACGCTCC
GCGCCCCCGACAACACAGCAGTGTCTCATACGAGCGATTATACTTCTACA
TCAACCCCCCCCCCCCCATTTCCGCGTTAGAACGTGTAACGGTAGCTTTT
GCGACGGCATTCACGGAGCGGGAAAGCTTGGAGTTTTGACCAGCGTATCG
AACCACGTGAGCGCTTTGGTGTGGGGGGCGTGGACCTGCCGATCGTTACT
CAGGCGTGGTGATCTTGTCCGCCTTTGTCTGTAGGTTTTGCCCCACCCCC
GCATAGGCAGGAACATACCGCTCCTCCTGCGCTGCGATCGCACCAACTGT
CAGTCGCATTCCACGTGCCCGGGTGGGAATACTCAACAGTCCCTTTGGTG
CCGTGATCCTGCCCAGCACTGTCTATCCGGGTTTAGCCCCCCTGTCGACA
GTGCTGAACCGCAGTTCTTCTTTGTCGGGATCAAGCTAAACGTTTCGTTC
TTCCGGTGTCGTGATCGTGTCGAACGTTGTTTTAACTTTGTTCAGGTTTA
ACCTTCCCCCCGTCGTAGACGTGCCCGGCGGTTTCAACACGTTGCTGGAG
GGCTACGGCATGGACGGGGCCCTGAAGAACTCTCTCGGTTCCAGCAACCG
GGCCCCCATCCTGGTCACCTGGTGAGAGAAAGGGAGAGAGAGGAATAGGG
GGAGGAAAGGAGGCACAGGGAGAGAGAAGGGTGAGGGGTATAGGGGGAGA
CGCAGAGGATAAAATAGGGAGGGGAGAGGGGAGGGGGGGGGAGAGAGGGC
GATACATGTGTACGATACGGGCGCGCCAATCACCGGGTGTGACCTGATGG
CGTTACACTGGGTGGGAGTAGGGTCGGGGAGGGTCGCCCGTGGTGCGAGA
GACAACGCCCAAGGCCGGGCTTGGAACCAGACAGCTCCTACCAAGCATTC
AAGCCGAAACACGAAACACCCAAGGCCCCACTTGGCGCACCTACAGAACT
CACCCCATCCCGCCGCTAGAATTCCTGAGCTCCTTGCGGAGAGGAGGTCT
CAGGCTACATGTGTACGTAGTTTTTGTGTGGACTTTTGCTGATTTGGGCG
TAGTTCGTGTGATTACCCCCCCGGTGTTTGTAGATGGCCTTGTGCTGGTT
CTATTGCCCGTGCTTAGCTTTTTGCGTCGGTTTTATTTGCCGTTTCGTGA
TGCCCCTTGTGTATGATGCAGGAACTACCCCAAGGGGTGGATCGTGCAGC
GGCCTAACACGGACACCAACAAGGAAGCCGGTACTGTGTCCACCGGAGAT
TATGGAAGGTGTGTATAAAAATACACAGCGGTGGTATTTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTTTAAATTTTGCTGTTGTTACTGCT
GCTGTTGTTCTCGTTGTTTGTTGTTGCTGTTGTCTTCGCATTAAAAACCA
TCCCGTCTCTCTCCACCGAGTACCCCCCTTTCGTCCGTACTGATCCAACA
GACACGGCCAATTCCCGTGGTCACAGGTTAACTCACCATAAAAATGTATA
CTAAAAAATAAAGTGGACCCGAAGGGTCAGAAGAGTGAAAAAAACAAAGA
ACCAAAAAGAAAATAGTCTGGAGCCCTCCGCTCCCCTCTGCACGCTATGG
GAGGCAAACTAAAAATAAATTATGCTGCGTTCTATTCAGAATCCGGTTGA
GCCCTCGTGGCGGACTGGAAGAGGTCGGGGAACACGCAAGATATGACTCG
CTTTCAGCGCTCTCTCTTCCCCGATTCAACCAGCAGGGCCGCACCACCGT
GCTTGCTCTGGACAAGGGAGTCCCATTTTTGTGTAGAATGACTTCGTTTA
TCGAACGGCTGGTGGCCGGAAGATGGTGCCGCCATGTCCTAGACAAGAGT
TGGAGTTTTTTTGTTGCGGTGGTTGAATTTGGTGTTTGGCAAAAAAAAAC
GCTCGTTTGATGCATGTGCCTCGTGCTTGTGCAAGCCGAAGAGATGGTAC
GTAAGACAAAGCCTGCGTACCTCCAAGGGTTGCGTAGAGAGATCAGGGCC
CGCACTCGCCTGCGAAAATCGTCAGGCGATGTTGGCAGCCGTGAGTATCG
CCCTTCAATACGGTGTACATATAACTACATATAACCCACCACGGACAATT
GTCGCCAACTTCGATTCGCGTATCCCCTGTTGTTGTGGTTTTTGTCCGGG
CGGTGGATTGGGGGGCCCGCAGGGGGGATTCCGCGGGGCTCTTCGTGGCG
CCCAAGTCGCTCATGGGGGGATCGAGCCTTTCCAGCAAGGAGGTCATGGA
GGGTGTCGTGAAGAAGGCGTTGTCGCAGAAGGTCAGGGGTGGTTCGTAGC
GGGGGGTTGAGAGTCCCACGTACGGGGGTGGGTACGCCTTTTGAGTAGGA
TGCCACACGGGGGGGGCATGAGACAAAGAAGGTGTACAACACAGTGATTC
CCTTGAAAAACCCAACAAGCAGATAGCACGAGATGCGATACACGGTTTTT
GCGCCGTTGCCAAGATTTGCGCCGTTTCTGTGGCCGTGGTGCCTCTCTGT
TGCGACCGTCACTGTTGGGAGCGTTGCGTCATCGCCTCTATTAAGAAAAG
GGGCGGTGCTGTTCGTGCTCATGGCTCATGGAGTACTGGTGCCATACATA
CATCCGCAGGATCGTTTTGGCGGCTGTTGAAAGACAAAGTCTCTCAACTC
CTCCCTCCTCCGTCCCCTCCCGCCCGCGTGTTATTTCGTCTTTTGCCGAA
ACCCTCAACACACAGGGTGACAACCAGTTCCAGAGCTTCAAGCTCAAGAG
CGTGAAGGACGGAGCCACAGAGTGAGCTAGTGTGCCCCTTCACGAGGCCT
TTTTGGACCCCCGGCTGATTTTTTTATGTAGTTTTATCTCCGCTACTGCC
GTAGTTCAGAGAGACCCTGTTCGATTCTTTTTTCTTCTGCAGTTTTGTCG
AGTTGTTGTTTTCTTCACGTTAAAATGTCGAGCGTGTGTGTATGTGTGTG
TTTTTTGTTTGTTTGGTTTTTGCCCAAAATGCTCGTGTTCCGTGGTTTGT
TCTTTTGTAAAGGGAAATAAATGGCTGTCTTTTATATACTGGTTCTACTA
CGCACGACCAACTCAAAAATCACTTCTGGGGTTCGAATGAGAGGCATTTT
GGAGTTGTTCCGTGTCGGGCGCGAAAACTGGAGTCCTGTGACCTGACCTG
ACCTGCCACCCACCTCCCTCCCTTGCGTTGTCCGCCGTTCCCCGTTGCGG
TGTATTGTCCATATTGTACCGTACCGTACCACCAACCAATAGCTTCAACG
GAAACAAGTACTACATCGCGGACTTCCAATACGAGCTCCTCACCGGGGCG
GGCTTCACCGTGGAGAGGAAGGGAGTAGCGTCCGTCGCTCAGGTTTGTGA
TTCTGTGTTTTCTTTTCGTTCCTTAGGTCCCCCCCCGTCGATTTGGCTGT
CGGTTGGCCTGTCCGATCGCTTGGTCTCGGCGTTGTTTCCTCGCAGAAGA
TGGCGCCAGTTTTGCCCTCGAGATCAAGCACTGGGAATAGACATGCCGAT
GACGATGCTGTGTCATTTGGGCAACAGTACCGCTCTTGTTGACGATACGC
GCATCTATGAAGTAAGTCCTTTTTTTTGCTTTTTTGTCGCGCGACAGGTC
GGCAACAGCGTCACCGCCGTGGTGGGAGCAACAACGGCAAACCGCGCCAA
GACGGTGAAGCCGCAGCTACAGGAGATCGCCACCAGCTTCCGTGTCTACG
AAGGAAAATTCGATTGAGTTGGTTGATTTTGCCTCCTTATTAGACATGCA
AGTTGCGTAGAACGTGTCGTCATCTCGTCACCAACACCTCGAGGGTGTTT
TTCTGCGCGTTGGTTGCGGCACCAACTAACTAGAAAATAGAGTTTGCATT
GGCGGCTCAATGGAAGGGCTTGGATTATGATAGCGCAGGAGAAGCACGGT
TAGCAGCAGCAGTAGCAGCACTCAACAAAGAGGAGGGGAATCATACGAGG
GCTGCTTGTTGGGTGTGTCACGGTCACCTTGCGGTTCTGTGCTCTCGTTG
CACACGAATTTGCAGTCATTTGTTTCTAGTGCGCAGCCAAGCAATGGTGC
CGCGCAGATTCCAGTGGCAGAGCAGAGGTCAATGTTACAGCAGAATCGGT
TTCAATGAACGCACCTTGAGCTCGGCCCCCCGCCCTCCGGGTGCAACGAG
AAAAAAACTACCA
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Coding sequence (CDS) from alignment at C-linearis_contig95:354806..360718-

>mRNA_C-linearis_contig95.16986.1 ID=mRNA_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at C-linearis_contig95:354806..360718- (Chordaria linearis ClinC8C monoicous)
ATGAAGACGGCCGTGGCGGTAGCAGCTTGCTGGGTGGTTGGTGTCCAGGC
GTTCGTCATGAAGACGGCCGTGGCGGTAGCAGCTTGCTGGGTGGTTGGTG
TCCAGGCGTTCGTCCAGGGAGGAATGGCAGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACATCAGCAGCAGCAGCAGCCGCAGCGGCAACAACAACAAC
AACAAGGATGAGCCTCCTGGAAGGAGAGCCGGCCGCCTTCTCGCGCTCGG
AGGCCCTGGGCAGGATAGGCGCGGCTTTCCTTGGCGCGGTTGTGGTCGGC
GCCGGCGTGCCTGCTCCTGCGTCGGCTGGGTCCGTCGCCGAGGCCAACAA
GAGGCTCAGCCACAGGGAGGAATGGCAGCAGCAGCAGCAGCAGCAGCAGC
AACAACAACATCAGCAGCAGCAGCAGCCGCAGCGGCAACAACAACAACAA
CAAGGATGAGCCTCCTGGAAGGAGAGCCGGCCGCCTTCTCGCGCTCGGAG
GCCCTGGGCAGGATAGGCGCGGCTTTCCTTGGCGCGGTTGTGGTCGGCGC
CGGCGTGCCTGCTCCTGCGTCGGCTGGGTCCGTCGCCGAGGCCAACAAGA
GGCTCAGCCAGTTTAACCTTCCCCCCGTCGTAGACGTGCCCGGCGGTTTC
AACACGTTGCTGGAGGGCTACGGCATGGACGGGGCCCTGAAGAACTCTCT
CGGTTCCAGCAACCGGGCCCCCATCCTGGTCACCTGGTTTAACCTTCCCC
CCGTCGTAGACGTGCCCGGCGGTTTCAACACGTTGCTGGAGGGCTACGGC
ATGGACGGGGCCCTGAAGAACTCTCTCGGTTCCAGCAACCGGGCCCCCAT
CCTGGTCACCTGGAACTACCCCAAGGGGTGGATCGTGCAGCGGCCTAACA
CGGACACCAACAAGGAAGCCGGTACTGTGTCCACCGGAGATTATGGAAGG
AACTACCCCAAGGGGTGGATCGTGCAGCGGCCTAACACGGACACCAACAA
GGAAGCCGGTACTGTGTCCACCGGAGATTATGGAAGGGGGGATTCCGCGG
GGCTCTTCGTGGCGCCCAAGTCGCTCATGGGGGGATCGAGCCTTTCCAGC
AAGGAGGTCATGGAGGGTGTCGTGAAGAAGGCGTTGTCGCAGAAGGGGGG
ATTCCGCGGGGCTCTTCGTGGCGCCCAAGTCGCTCATGGGGGGATCGAGC
CTTTCCAGCAAGGAGGTCATGGAGGGTGTCGTGAAGAAGGCGTTGTCGCA
GAAGGGTGACAACCAGTTCCAGAGCTTCAAGCTCAAGAGCGTGAAGGACG
GAGCCACAGAGGTGACAACCAGTTCCAGAGCTTCAAGCTCAAGAGCGTGA
AGGACGGAGCCACAGACTTCAACGGAAACAAGTACTACATCGCGGACTTC
CAATACGAGCTCCTCACCGGGGCGGGCTTCACCGTGGAGAGGAAGGGAGT
AGCGTCCGTCGCTCAGCTTCAACGGAAACAAGTACTACATCGCGGACTTC
CAATACGAGCTCCTCACCGGGGCGGGCTTCACCGTGGAGAGGAAGGGAGT
AGCGTCCGTCGCTCAGGTCGGCAACAGCGTCACCGCCGTGGTGGGAGCAA
CAACGGCAAACCGCGCCAAGACGGTGAAGCCGCAGCTACAGGAGATCGCC
ACCAGCTTCCGTGTCTACGAAGGAAAATTCGATTGAGTCGGCAACAGCGT
CACCGCCGTGGTGGGAGCAACAACGGCAAACCGCGCCAAGACGGTGAAGC
CGCAGCTACAGGAGATCGCCACCAGCTTCCGTGTCTACGAAGGAAAATTC
GATTGA
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