mRNA_C-linearis_contig95.16989.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16989.1
Unique NamemRNA_C-linearis_contig95.16989.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:371479..372702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1224
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16989.1prot_C-linearis_contig95.16989.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 371600..372220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.1570334-UTR-C-linearis_contig95:371478..3715991622930809.1570334-UTR-C-linearis_contig95:371478..371599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 371479..371599 +
1690881261.0852506-UTR-C-linearis_contig95:371478..3715991690881261.0852506-UTR-C-linearis_contig95:371478..371599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 371479..371599 +
1622930809.1985788-UTR-C-linearis_contig95:372220..3727021622930809.1985788-UTR-C-linearis_contig95:372220..372702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 372221..372702 +
1690881261.1058025-UTR-C-linearis_contig95:372220..3727021690881261.1058025-UTR-C-linearis_contig95:372220..372702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 372221..372702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930809.1773424-CDS-C-linearis_contig95:371599..3722201622930809.1773424-CDS-C-linearis_contig95:371599..372220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 371600..372220 +
1690881261.0957978-CDS-C-linearis_contig95:371599..3722201690881261.0957978-CDS-C-linearis_contig95:371599..372220Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 371600..372220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16989.1

>prot_C-linearis_contig95.16989.1 ID=prot_C-linearis_contig95.16989.1|Name=mRNA_C-linearis_contig95.16989.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=207bp
MEYFAYDGGVCTAMRSCICWKTSKTKNRCFCTRNVGVFATLRNMVVLLPP
FDVTVSCVRSASNCKRLSALLGPSAEILIFAPFVFSCALRIGRPEPSCHT
VGLKPTCRHKLAESSSLKTAPKIARLCTYTSYVHVLTGLNSPPDFVRGNT
YSCQPWRGSSESCLKQHILDRRQKNIASSADTGTCVFITKRFGPRSLCTP
SNHNPA*
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mRNA from alignment at C-linearis_contig95:371479..372702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16989.1 ID=mRNA_C-linearis_contig95.16989.1|Name=mRNA_C-linearis_contig95.16989.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1224bp|location=Sequence derived from alignment at C-linearis_contig95:371479..372702+ (Chordaria linearis ClinC8C monoicous)
TGTGCTTGCGTGTTTGTGTGTGTGATTAGACTAAAGGAGTTGTCCGGTGC
GTTTTTTTTTGCGCGGAGAGAGTATTTTTGGTCTGCGTTGAGTGGTTTTT
GCTGTCGGATGTTGTGTGCACATGGAGTATTTCGCGTATGATGGAGGTGT
GTGTACGGCAATGAGATCTTGTATTTGCTGGAAGACGAGCAAGACAAAAA
ATAGATGCTTTTGTACACGAAACGTGGGGGTCTTTGCCACACTCCGCAAC
ATGGTAGTTCTGCTGCCTCCTTTCGATGTCACCGTGAGCTGCGTGCGGTC
CGCCTCAAATTGCAAACGCCTCTCTGCATTGCTTGGTCCTTCCGCGGAAA
TATTAATATTTGCACCATTCGTTTTTTCGTGCGCGCTTAGGATCGGGAGA
CCAGAGCCTAGCTGTCACACAGTAGGCCTGAAACCGACTTGCCGACACAA
ACTCGCCGAGAGCTCGTCACTTAAAACGGCTCCCAAGATTGCTAGACTAT
GTACGTATACTTCGTATGTACATGTGCTGACGGGGCTGAATTCCCCCCCC
GATTTTGTCCGGGGCAACACATATTCCTGCCAACCTTGGCGCGGTTCTTC
GGAGAGTTGCTTGAAGCAGCACATCCTGGACAGGAGGCAGAAAAATATTG
CCAGCAGCGCGGATACAGGGACGTGTGTTTTTATAACGAAGAGATTTGGG
CCGAGGTCTTTATGCACGCCATCAAATCACAACCCCGCGTGAGATGCGCA
GATAGCAGTTGAGACTGTTCCACTGAGTACCAGTCTAAGGTATCCACGTG
ATCTGGGAGTGAAAATGTCAAGTGTTTGTGCGCAGAATAGCTTGCCACTG
AGTTGCGTGGGGTATGGAGTATTCCACATGTGACGACGGTATATGTAGCG
TACTACAGCGGTAACTGCAATAAGCAGCGTGATGCTTGAAAGTGCCACAG
ATAGATGAGATGTGGATTGGTTCCAAAACGATCTTTTCAAGGATTCGCAA
TTCACAGTAATCAACGAGCGAGTAGGCCCTGCCACAATAACGCCAACGAA
AGACGGAGTTGAACTCTACATTGCAGCAGAACGAAGCGAAACGTTAGGCG
CCATGGGCTTGTCTATTGCGGGGGCGCCCCTCACGTGACGAACGAAGAGG
AATGGTGCACTGTCTACACCAGACCAGTGCAACGTGAAAAGGTTGGGTTT
GTAGTGTAACATATGAGTTTGTGC
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Coding sequence (CDS) from alignment at C-linearis_contig95:371479..372702+

>mRNA_C-linearis_contig95.16989.1 ID=mRNA_C-linearis_contig95.16989.1|Name=mRNA_C-linearis_contig95.16989.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at C-linearis_contig95:371479..372702+ (Chordaria linearis ClinC8C monoicous)
ATGGAGTATTTCGCGTATGATGGAGGTGTGTGTACGGCAATGAGATCTTG
TATTTGCTGGAAGACGAGCAAGACAAAAAATAGATGCTTTTGTACACGAA
ACGTGGGGGTCTTTGCCACACTCCGCAACATGGTAGTTCTGCTGCCTCCT
TTCGATGTCACCGTGAGCTGCGTGCGGTCCGCCTCAAATTGCAAACGCCT
CTCTGCATTGCTTGGTCCTTCCGCGGAAATATTAATATTTGCACCATTCG
TTTTTTCGTGCGCGCTTAGGATCGGGAGACCAGAGCCTAGCTGTCACACA
GTAGGCCTGAAACCGACTTGCCGACACAAACTCGCCGAGAGCTCGTCACT
TAAAACGGCTCCCAAGATTGCTAGACTATGTACGTATACTTCGTATGTAC
ATGTGCTGACGGGGCTGAATTCCCCCCCCGATTTTGTCCGGGGCAACACA
TATTCCTGCCAACCTTGGCGCGGTTCTTCGGAGAGTTGCTTGAAGCAGCA
CATCCTGGACAGGAGGCAGAAAAATATTGCCAGCAGCGCGGATACAGGGA
CGTGTGTTTTTATAACGAAGAGATTTGGGCCGAGGTCTTTATGCACGCCA
TCAAATCACAACCCCGCGTGAATGGAGTATTTCGCGTATGATGGAGGTGT
GTGTACGGCAATGAGATCTTGTATTTGCTGGAAGACGAGCAAGACAAAAA
ATAGATGCTTTTGTACACGAAACGTGGGGGTCTTTGCCACACTCCGCAAC
ATGGTAGTTCTGCTGCCTCCTTTCGATGTCACCGTGAGCTGCGTGCGGTC
CGCCTCAAATTGCAAACGCCTCTCTGCATTGCTTGGTCCTTCCGCGGAAA
TATTAATATTTGCACCATTCGTTTTTTCGTGCGCGCTTAGGATCGGGAGA
CCAGAGCCTAGCTGTCACACAGTAGGCCTGAAACCGACTTGCCGACACAA
ACTCGCCGAGAGCTCGTCACTTAAAACGGCTCCCAAGATTGCTAGACTAT
GTACGTATACTTCGTATGTACATGTGCTGACGGGGCTGAATTCCCCCCCC
GATTTTGTCCGGGGCAACACATATTCCTGCCAACCTTGGCGCGGTTCTTC
GGAGAGTTGCTTGAAGCAGCACATCCTGGACAGGAGGCAGAAAAATATTG
CCAGCAGCGCGGATACAGGGACGTGTGTTTTTATAACGAAGAGATTTGGG
CCGAGGTCTTTATGCACGCCATCAAATCACAACCCCGCGTGA
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