prot_C-linearis_contig95.16978.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig95.16978.1
Unique Nameprot_C-linearis_contig95.16978.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length108
Homology
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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5JUA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.490e-9
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 0 
Query:   13 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTG 46
            S WQ+LAGGT GGVIGMTVVYPLDT+K RLQT+G
Sbjct:    3 SLWQELAGGTAGGVIGMTVVYPLDTIKSRLQTSG 36
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BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Match: A0A6H5K323_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K323_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.070e-8
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:   13 SFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLVSRPHVSAGGIRDDV 64
            + WQDL GGTVGGVIG+T V PLDTVK RLQT G  L +   +S+  + + V
Sbjct:    3 TLWQDLTGGTVGGVIGVTAVCPLDTVKSRLQTGGRYLGTVQVLSSMAVHEGV 54
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUA4_9PHAE3.490e-982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K323_9PHAE4.070e-855.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 13..49
e-value: 7.5E-9
score: 35.4
IPR023395Mitochondrial carrier domain superfamilyGENE3D1.50.40.10coord: 2..75
e-value: 2.5E-7
score: 31.6
IPR023395Mitochondrial carrier domain superfamilySUPERFAMILY103506Mitochondrial carriercoord: 13..64
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:274635..277012 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16978.1mRNA_C-linearis_contig95.16978.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig95 274625..277075 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig95.16978.1 ID=prot_C-linearis_contig95.16978.1|Name=mRNA_C-linearis_contig95.16978.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=108bp
MEDGREEEAMGASFWQDLAGGTVGGVIGMTVVYPLDTVKCRLQTTGDVLV
SRPHVSAGGIRDDVCRCLRLLRLRQPFPAKVRSLWPKCFFRFPQGRPGGL
VDKPHTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom_sf