mRNA_C-linearis_contig95.16972.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16972.1
Unique NamemRNA_C-linearis_contig95.16972.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.570e-21
Identity = 92/227 (40.53%), Postives = 110/227 (48.46%), Query Frame = 1 
Query:  196 WEIFGEGISGAFLQAQQGLEGLSLPGVGDAFWLTFGQMDVPELPALPELRLFGLSWPPPPSTTXXXXXXXXXXXXXXXXXXITPSATPPATPTPVGGAPAAAXXXXXXXXXXXXXXXXAEDASTATLVERRAGGKKQGLSGRISSMWRRKRPXXXXXXXXXXXXXXXSVPTTNLPGAEAAXXXXXXXXXXXXXXXXXXXXXXXAGRWRKVGALAGLRRRLPLLGRSG 876
            WE  GEG+SGAFL AQQGLE L+L GVGDAFWL FGQMDVPELP L +LR+FGLSWPP        XXXXXXXXXX     + P++  PAT                             ++ T T+       K +GL+ R+   WRR RP               +V + +  G +                         AGRWRKVGALAGLR+RL L G  G
Sbjct:   75 WEGIGEGLSGAFLHAQQGLEELNLLGVGDAFWLNFGQMDVPELPTLSDLRIFGLSWPP--------XXXXXXXXXXAREPKLQPASAAPATTA----------------NGETEGLSGGGESVTGTITGEI---KTRGLTRRLPP-WRRGRPKTDGGVGRTPAAAAAAVDSASEEGQDRPITK--------------------AGRWRKVGALAGLRKRLSLYGTHG 253
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNE8_ECTSI4.570e-2140.53Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:210279..213301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FNE8
KEGG koko:K16815
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size1024
Cds size1023
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16972.1prot_C-linearis_contig95.16972.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 210279..213301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.8125641-CDS-C-linearis_contig95:210278..2103591622930807.8125641-CDS-C-linearis_contig95:210278..210359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 210279..210359 +
1690881260.399508-CDS-C-linearis_contig95:210278..2103591690881260.399508-CDS-C-linearis_contig95:210278..210359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 210279..210359 +
1622930807.8368125-CDS-C-linearis_contig95:211479..2116231622930807.8368125-CDS-C-linearis_contig95:211479..211623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 211480..211623 +
1690881260.4253554-CDS-C-linearis_contig95:211479..2116231690881260.4253554-CDS-C-linearis_contig95:211479..211623Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 211480..211623 +
1622930807.8563366-CDS-C-linearis_contig95:212113..2122091622930807.8563366-CDS-C-linearis_contig95:212113..212209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 212114..212209 +
1690881260.4403102-CDS-C-linearis_contig95:212113..2122091690881260.4403102-CDS-C-linearis_contig95:212113..212209Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 212114..212209 +
1622930807.8734758-CDS-C-linearis_contig95:212599..2133011622930807.8734758-CDS-C-linearis_contig95:212599..213301Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 212600..213301 +
1690881260.4558818-CDS-C-linearis_contig95:212599..2133011690881260.4558818-CDS-C-linearis_contig95:212599..213301Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 212600..213301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16972.1

>prot_C-linearis_contig95.16972.1 ID=prot_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=341bp
MSAAGAAAARRRVLDSSGMARHNIGQQGDPTLDQQSPLDIDGSKGSVAEG
GGGAPDGPPREGLGSWEIFGEGISGAFLQAQQGLEGLSLPGVGDAFWLTF
GQMDVPELPALPELRLFGLSWPPPPSTTPKPATKPKKTTKRTKITKITPS
ATPPATPTPVGGAPAAATVAAAGRATVTTAAGNAEDASTATLVERRAGGK
KQGLSGRISSMWRRKRPAVAAAAMAGGGEGSGSVPTTNLPGAEAAVDGGG
GGGRTTRTTSRGGEQKAAAGRWRKVGALAGLRRRLPLLGRSGGGGAASTS
SGGGGNVEGVGGPDPLGDASSAVLPSIERQEKKKEEFEEEE
back to top

mRNA from alignment at C-linearis_contig95:210279..213301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16972.1 ID=mRNA_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3023bp|location=Sequence derived from alignment at C-linearis_contig95:210279..213301+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGCGGCGGGGGCGGCGGCGGCGAGGAGGCGGGTGTTGGATTCGTC
GGGCATGGCACGCCACAACATCGGGCAGCAGGTACTGTCTTGCCTGTGGA
GTTTTTGTATTCATGCGACCAGATTTTGTTTTACGGCATGCTCATGCTTG
CGTCTCGTGCATGACGTGTACGTACGTGGTCAATTAGCGAGGTGCTTGGT
CGTATCTACTGCTGCTGCTGCTGCTGCTGCTGCTGTGGTACGCGTTGTTG
TGGTCGCTGCGTTCCTGTCCCGCCGCTGTTGTCGCGTGTTTCCGTTTTGA
CGACATCGGCATCGGCATCGGCATCGGCATCGACATCGACATCGACATCG
ACATCGGCATCGGATGCCTTGTTCTCTGGGATTTGGGTGTCGTCTTAAAG
TCTTAACGTCTTAACGTCTTAACGTCTTAAAGTTTAACGTCTTAAAGTCT
TAAAGTCTTAAAGTCTTAACGTCTTAAAGTCTTAACGTCTTAACGTCTTA
AAGTCTTAACGTCTTAAATTCTTAAAGTCTTAACGTCTTAAAGTCTTAAC
GTCTTAACGTCTTAAAGTCTTAAAGTCTTAAAGTCTTAACGTCTTAAAGT
CTTAACGTCTTAACGTCTTAACGTCTTAAAGTCTTAAAGTCTTAAAGTCT
TAACGTCTTAAAGTCTTAACGTCTTAACGTCTTAAAGTCTTAAAGTCTTA
AAGTCTTAACGTCTTAAAGTCTTAACGTCTTAAAGTCTTAAAGTCTTAAA
GTCTTAACGTCTTAAAGTCTTAACAGGGGCGGGGCGCAGAGGGGGTGCGG
CACCGCGTGCTCGGGGTTACCAGAGACACCTGCACGTGGACCCTTACTTC
TGCTGCTTACTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGC
TTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTTGCTGCTTGCTT
GCTGCTTGCTTGCTGCTGACTTCTGCTCGTGCTGGTGCTGGTGCTGGTGC
TGCTGGCTTCTTCTGCTGCACTATTCGTGTTTTTCGTCCCCCGTAAATCC
ACGCGGCGCAAAAACCCGCTTAAAAATCCTCGACATGACATGTCGCAGCA
ACGCACGCACGGATATGAGAACCGGACCCCCCCCCCCTACACACACACGC
TCACACATTGTTTCTCGGCACCCTCTTCCCCCCTTTTTGCTCCTTGTCAA
GGGCGACCCGACTCTCGACCAGCAGTCGCCCCTAGACATCGACGGCAGCA
AAGGTTCGGTTGCGGAAGGGGGGGGGGGTGCGCCGGACGGGCCTCCTCGG
GAAGGGTTGGGCTCGTGGGAGATCTTCGGAGAAGGCATCTCGGGGGTGAG
GTTGTTGCTTGGCGTCGCGGGATTGGCATCAGTCGGCGCTAAGGGCTGAA
GTTGAAGGTTAAGGTTATGGGTTGTCCAGTGGGGTGAGGGCTCCTGAGAG
GAATCCCGGAAAAGGGATCTAGAATATCAAGGGCGTGAGGTACACAACAT
GTTTCAGCGACTTAAAGCAGCAGCGCGAAGGAGTGTGGTGGAAAGGGGCG
CATTGCATGTGCGCCCCCCTCGACCCCAAAAGCCTGAAAGCTGAAAGCCA
AGTCCTTGCATCTTTCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGC
CGGCTGCCAGTCTTCTCGCAGCCATTGGTTGCCGTGTACTTGGAAGTATG
TACCCCTAATACCAAATACCTTCCGGTTGTGGCCTTTCCTGGCCTTTTTT
TTTCTTCTTTTTTTTGCGCTTCCAAGACCCTCGAACTCTGCCTTGTCTGT
CCAAAACATCGACGAATTGAATGGAATGGAATCAGGCTTTCCTGCAGGCG
CAGCAGGGTCTGGAAGGGCTCAGTCTCCCGGGGGTCGGGGACGCGTTTTG
GCTCACGTTCGGCCAGATGGATGTCCCGGAGGTGAGAGCGCGCGGGGTGC
GTTGGTTGTTGTTTTTCTTCATCCTATGTCATGTCGTGTCATGTCATGTC
ATGGCGTGCTTGGCTTGGCTTGTCGTCGTCCGTTGTTGTCTGTAACAAGT
TGTTGGATGCTATTTCCTGGGTATATACCACCAATGACATAAGTGTTACG
TCTGTTTCCTGGGTATGCTTCGAAGTATACCACCAAATCACGGAATTGTT
CCGTCTATTTTCTGGGTATTTACCACCCATCACTACCACCAATCAATCCG
TCCGATTCCTAACGATGGCAAACCCGGACGTTTTGTTCTTCTTTTGTTTC
CCCTCGTCGTGCCAACACGGTGCGGTTCTGGTCACCCCAAACTTGGGGAT
GGACAACGAATCCAACAAAAGCTGCCTGCCCTGCCCGAACTACGACTCTT
CGGCCTCTCCTGGCCACCTCCCCCGTCGACAACACCAAAACCCGCAACTA
AACCAAAAAAGACGACGAAAAGAACAAAAATAACGAAAATAACCCCGTCA
GCGACACCGCCGGCGACACCAACACCCGTAGGAGGGGCACCTGCAGCAGC
AACAGTAGCAGCCGCAGGGAGGGCAACAGTCACAACCGCGGCGGGCAACG
CCGAAGACGCTTCAACGGCTACGCTAGTCGAAAGAAGGGCGGGCGGCAAG
AAACAGGGGCTGTCGGGGAGGATTTCTTCCATGTGGCGCAGAAAACGGCC
CGCCGTGGCAGCGGCAGCGATGGCCGGCGGGGGCGAGGGTAGCGGATCAG
TGCCCACCACTAACCTGCCAGGAGCAGAAGCTGCAGTAGATGGTGGAGGT
GGAGGGGGACGCACGACAAGAACAACAAGCAGGGGGGGCGAGCAGAAAGC
GGCGGCGGGGCGATGGAGGAAGGTCGGGGCCTTGGCCGGGCTTAGGAGGC
GGCTCCCGCTGCTCGGTCGGAGCGGCGGCGGTGGTGCTGCCAGCACCAGC
AGTGGCGGTGGCGGCAATGTGGAGGGAGTGGGTGGTCCTGATCCTCTTGG
GGACGCGTCTTCCGCGGTATTGCCAAGCATAGAGCGACAAGAAAAGAAGA
AGGAAGAGTTCGAGGAGGAGGAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig95:210279..213301+

>mRNA_C-linearis_contig95.16972.1 ID=mRNA_C-linearis_contig95.16972.1|Name=mRNA_C-linearis_contig95.16972.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2046bp|location=Sequence derived from alignment at C-linearis_contig95:210279..213301+ (Chordaria linearis ClinC8C monoicous)
ATGTCGGCGGCGGGGGCGGCGGCGGCGAGGAGGCGGGTGTTGGATTCGTC
GGGCATGGCACGCCACAACATCGGGCAGCAGATGTCGGCGGCGGGGGCGG
CGGCGGCGAGGAGGCGGGTGTTGGATTCGTCGGGCATGGCACGCCACAAC
ATCGGGCAGCAGGGCGACCCGACTCTCGACCAGCAGTCGCCCCTAGACAT
CGACGGCAGCAAAGGTTCGGTTGCGGAAGGGGGGGGGGGTGCGCCGGACG
GGCCTCCTCGGGAAGGGTTGGGCTCGTGGGAGATCTTCGGAGAAGGCATC
TCGGGGGGCGACCCGACTCTCGACCAGCAGTCGCCCCTAGACATCGACGG
CAGCAAAGGTTCGGTTGCGGAAGGGGGGGGGGGTGCGCCGGACGGGCCTC
CTCGGGAAGGGTTGGGCTCGTGGGAGATCTTCGGAGAAGGCATCTCGGGG
GCTTTCCTGCAGGCGCAGCAGGGTCTGGAAGGGCTCAGTCTCCCGGGGGT
CGGGGACGCGTTTTGGCTCACGTTCGGCCAGATGGATGTCCCGGAGGCTT
TCCTGCAGGCGCAGCAGGGTCTGGAAGGGCTCAGTCTCCCGGGGGTCGGG
GACGCGTTTTGGCTCACGTTCGGCCAGATGGATGTCCCGGAGCTGCCTGC
CCTGCCCGAACTACGACTCTTCGGCCTCTCCTGGCCACCTCCCCCGTCGA
CAACACCAAAACCCGCAACTAAACCAAAAAAGACGACGAAAAGAACAAAA
ATAACGAAAATAACCCCGTCAGCGACACCGCCGGCGACACCAACACCCGT
AGGAGGGGCACCTGCAGCAGCAACAGTAGCAGCCGCAGGGAGGGCAACAG
TCACAACCGCGGCGGGCAACGCCGAAGACGCTTCAACGGCTACGCTAGTC
GAAAGAAGGGCGGGCGGCAAGAAACAGGGGCTGTCGGGGAGGATTTCTTC
CATGTGGCGCAGAAAACGGCCCGCCGTGGCAGCGGCAGCGATGGCCGGCG
GGGGCGAGGGTAGCGGATCAGTGCCCACCACTAACCTGCCAGGAGCAGAA
GCTGCAGTAGATGGTGGAGGTGGAGGGGGACGCACGACAAGAACAACAAG
CAGGGGGGGCGAGCAGAAAGCGGCGGCGGGGCGATGGAGGAAGGTCGGGG
CCTTGGCCGGGCTTAGGAGGCGGCTCCCGCTGCTCGGTCGGAGCGGCGGC
GGTGGTGCTGCCAGCACCAGCAGTGGCGGTGGCGGCAATGTGGAGGGAGT
GGGTGGTCCTGATCCTCTTGGGGACGCGTCTTCCGCGGTATTGCCAAGCA
TAGAGCGACAAGAAAAGAAGAAGGAAGAGTTCGAGGAGGAGGAGCTGCCT
GCCCTGCCCGAACTACGACTCTTCGGCCTCTCCTGGCCACCTCCCCCGTC
GACAACACCAAAACCCGCAACTAAACCAAAAAAGACGACGAAAAGAACAA
AAATAACGAAAATAACCCCGTCAGCGACACCGCCGGCGACACCAACACCC
GTAGGAGGGGCACCTGCAGCAGCAACAGTAGCAGCCGCAGGGAGGGCAAC
AGTCACAACCGCGGCGGGCAACGCCGAAGACGCTTCAACGGCTACGCTAG
TCGAAAGAAGGGCGGGCGGCAAGAAACAGGGGCTGTCGGGGAGGATTTCT
TCCATGTGGCGCAGAAAACGGCCCGCCGTGGCAGCGGCAGCGATGGCCGG
CGGGGGCGAGGGTAGCGGATCAGTGCCCACCACTAACCTGCCAGGAGCAG
AAGCTGCAGTAGATGGTGGAGGTGGAGGGGGACGCACGACAAGAACAACA
AGCAGGGGGGGCGAGCAGAAAGCGGCGGCGGGGCGATGGAGGAAGGTCGG
GGCCTTGGCCGGGCTTAGGAGGCGGCTCCCGCTGCTCGGTCGGAGCGGCG
GCGGTGGTGCTGCCAGCACCAGCAGTGGCGGTGGCGGCAATGTGGAGGGA
GTGGGTGGTCCTGATCCTCTTGGGGACGCGTCTTCCGCGGTATTGCCAAG
CATAGAGCGACAAGAAAAGAAGAAGGAAGAGTTCGAGGAGGAGGAG
back to top