mRNA_C-linearis_contig93.16896.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16896.1
Unique NamemRNA_C-linearis_contig93.16896.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16896.1 vs. uniprot
Match: A0A6H5KFX7_9PHAE (Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX7_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.210e-46
Identity = 89/193 (46.11%), Postives = 119/193 (61.66%), Query Frame = 1 
Query:    1 MGIVKLSPKLKVLCGLQANLE-TDKNLELVIDGGFLLHKCASRGDAAEKLVLNNDVNGIARQCAREIERFEKRGLAVWLVFDGCPPPAKGCTGDGRRETREGYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIMTAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLL 576
            MGI+ LS   K +  L  NL+  + +  +++DGGFLLH+C +R  AA  L+L++DV  + ++CA E+ RFE RG  V +V DG  PPAK  T + RR  RE    +AR L    G + +++K  + AC F  R VAR+ATLLRP I G +  AP EADPQI + ++     G  V VY NDSDL VLGVR LL
Sbjct:    1 MGILSLSKHAKSVGSLSVNLQHAEHDDRIIVDGGFLLHRCCTRRTAARDLLLHDDVAPLVKECAAEVSRFESRGFKVTVVLDGSTPPAKKSTSEARRTKREAAASEARELQRTGGRLTEINKKASNACVFDSRVVARVATLLRPQIAGEVYIAPREADPQIVIFQDIYLETGCTVYVYANDSDLIVLGVRSLL 193
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFX7_9PHAE1.210e-4646.11Exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:109698..110282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue7.1e-32
Seed eggNOG ortholog2880.D7G0K2
KEGG koko:K10746
KEGG Pathwayko03430,map03430
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size585
Cds size585
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.336933-CDS-C-linearis_contig93:109697..1102821622930797.336933-CDS-C-linearis_contig93:109697..110282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 109698..110282 +
1690881255.1957083-CDS-C-linearis_contig93:109697..1102821690881255.1957083-CDS-C-linearis_contig93:109697..110282Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 109698..110282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16896.1prot_C-linearis_contig93.16896.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 109698..110282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16896.1

>prot_C-linearis_contig93.16896.1 ID=prot_C-linearis_contig93.16896.1|Name=mRNA_C-linearis_contig93.16896.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=195bp
MGIVKLSPKLKVLCGLQANLETDKNLELVIDGGFLLHKCASRGDAAEKLV
LNNDVNGIARQCAREIERFEKRGLAVWLVFDGCPPPAKGCTGDGRRETRE
GYERDARRLLGEAGAMAQVHKLCAQACSFGPRTVARIATLLRPMIKGRIM
TAPGEADPQIAVVEETIRARGADVMVYGNDSDLAVLGVRKLLHKI
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mRNA from alignment at C-linearis_contig93:109698..110282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16896.1 ID=mRNA_C-linearis_contig93.16896.1|Name=mRNA_C-linearis_contig93.16896.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=585bp|location=Sequence derived from alignment at C-linearis_contig93:109698..110282+ (Chordaria linearis ClinC8C monoicous)
ATGGGGATCGTCAAGCTGTCACCCAAACTGAAAGTGCTCTGCGGCTTGCA
AGCGAACCTCGAGACAGACAAGAACCTAGAGCTGGTAATCGATGGTGGAT
TCCTTCTTCATAAGTGTGCCTCGAGAGGCGATGCTGCCGAAAAATTGGTG
CTCAACAACGACGTGAATGGAATTGCACGACAGTGTGCCCGCGAGATCGA
GAGGTTCGAGAAACGAGGCCTCGCTGTCTGGTTGGTGTTTGACGGCTGTC
CACCGCCGGCTAAGGGTTGCACGGGGGACGGACGCAGAGAGACGCGAGAG
GGATACGAGAGGGACGCTCGCCGCCTGCTAGGAGAAGCTGGAGCCATGGC
GCAAGTCCACAAGCTGTGTGCTCAAGCATGCTCTTTCGGCCCGCGTACGG
TAGCTCGGATCGCGACTCTTCTGCGGCCTATGATAAAAGGCCGTATCATG
ACCGCTCCAGGCGAGGCTGATCCACAGATTGCCGTAGTCGAGGAAACGAT
AAGGGCGCGGGGGGCAGACGTCATGGTCTACGGAAATGACAGCGACTTGG
CTGTCTTGGGTGTCCGGAAGCTCCTCCATAAAATT
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Coding sequence (CDS) from alignment at C-linearis_contig93:109698..110282+

>mRNA_C-linearis_contig93.16896.1 ID=mRNA_C-linearis_contig93.16896.1|Name=mRNA_C-linearis_contig93.16896.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at C-linearis_contig93:109698..110282+ (Chordaria linearis ClinC8C monoicous)
ATGGGGATCGTCAAGCTGTCACCCAAACTGAAAGTGCTCTGCGGCTTGCA
AGCGAACCTCGAGACAGACAAGAACCTAGAGCTGGTAATCGATGGTGGAT
TCCTTCTTCATAAGTGTGCCTCGAGAGGCGATGCTGCCGAAAAATTGGTG
CTCAACAACGACGTGAATGGAATTGCACGACAGTGTGCCCGCGAGATCGA
GAGGTTCGAGAAACGAGGCCTCGCTGTCTGGTTGGTGTTTGACGGCTGTC
CACCGCCGGCTAAGGGTTGCACGGGGGACGGACGCAGAGAGACGCGAGAG
GGATACGAGAGGGACGCTCGCCGCCTGCTAGGAGAAGCTGGAGCCATGGC
GCAAGTCCACAAGCTGTGTGCTCAAGCATGCTCTTTCGGCCCGCGTACGG
TAGCTCGGATCGCGACTCTTCTGCGGCCTATGATAAAAGGCCGTATCATG
ACCGCTCCAGGCGAGGCTGATCCACAGATTGCCGTAGTCGAGGAAACGAT
AAGGGCGCGGGGGGCAGACGTCATGGTCTACGGAAATGACAGCGACTTGG
CTGTCTTGGGTGTCCGGAAGCTCCTCCATAAAATTATGGGGATCGTCAAG
CTGTCACCCAAACTGAAAGTGCTCTGCGGCTTGCAAGCGAACCTCGAGAC
AGACAAGAACCTAGAGCTGGTAATCGATGGTGGATTCCTTCTTCATAAGT
GTGCCTCGAGAGGCGATGCTGCCGAAAAATTGGTGCTCAACAACGACGTG
AATGGAATTGCACGACAGTGTGCCCGCGAGATCGAGAGGTTCGAGAAACG
AGGCCTCGCTGTCTGGTTGGTGTTTGACGGCTGTCCACCGCCGGCTAAGG
GTTGCACGGGGGACGGACGCAGAGAGACGCGAGAGGGATACGAGAGGGAC
GCTCGCCGCCTGCTAGGAGAAGCTGGAGCCATGGCGCAAGTCCACAAGCT
GTGTGCTCAAGCATGCTCTTTCGGCCCGCGTACGGTAGCTCGGATCGCGA
CTCTTCTGCGGCCTATGATAAAAGGCCGTATCATGACCGCTCCAGGCGAG
GCTGATCCACAGATTGCCGTAGTCGAGGAAACGATAAGGGCGCGGGGGGC
AGACGTCATGGTCTACGGAAATGACAGCGACTTGGCTGTCTTGGGTGTCC
GGAAGCTCCTCCATAAAATT
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