mRNA_C-linearis_contig92.16853.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 297 bits (761), Expect = 8.990e-101 Identity = 165/188 (87.77%), Postives = 172/188 (91.49%), Query Frame = 1
Query: 1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSSLDLLMLAERAREINADRSHAAGSEAQGVEAS--CALGGPVQVQQQARRTVPGVLSG 558
MPSTLSKLY AAA GSVERTVA+LS GSV+IDGGYGDV RTPLMAASTMGY+RVVRVLLR+GARVSVADNDGATALHLSIVNK LAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIHA GGCSS DLL+LAER EINADRSHAAGSEAQG EAS C LGGPVQVQQQ RTVPGVLSG
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHA-GGCSSRDLLVLAERLGEINADRSHAAGSEAQGDEASGGCGLGGPVQVQQQGGRTVPGVLSG 187
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 209 bits (531), Expect = 9.200e-66 Identity = 112/125 (89.60%), Postives = 117/125 (93.60%), Query Frame = 1
Query: 1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIH 375
MPSTLSKLY AAA GSVERTVA+LS GSVDIDGGYGDV RTPLMAASTMGY+RVVRVLLR GARVSVADNDGATALHLSIV K LAVS+AL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIH
Sbjct: 1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH 125
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 213 bits (541), Expect = 4.440e-61 Identity = 114/132 (86.36%), Postives = 119/132 (90.15%), Query Frame = 1
Query: 1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSS 396
MPSTLSKLY A A GSVERTVA+LS GSVDIDGGYGDV RTPLMAA TMGY+RVVRVLLR+GARVSVADNDGATALHLSIVNK LAVSKAL+KAGA VEARGVDGTPLHVAAAKGFHKG+VMLIHA S
Sbjct: 1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.860e-37 Identity = 85/123 (69.11%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 28 AAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARGVDGTPLHVAAAKGFHKGLVMLIHAAGGCSS 396
A ARGSVERTVALLS GSVDIDG YGD RTPLM ASTMGY+RV RVLLR+GA VSVADNDGATALHLS+ N+ LAVSKALIKAGA+VEAR VDG +V+LIHA S
Sbjct: 2 ATTARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHAGANVDS 110
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE) HSP 1 Score: 132 bits (332), Expect = 1.580e-33 Identity = 72/88 (81.82%), Postives = 77/88 (87.50%), Query Frame = 1
Query: 136 ASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEAR-------GVDGTPLHVAAAKGFHKGLVMLIHA 378
ASTMGY+RVVRVLLR+GARVS ADNDGATALHLSIVNK LAVSKAL+KAGAD+EAR GV TPLHVAAAKGFHKG+VMLIHA
Sbjct: 38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHA 125
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 115 bits (288), Expect = 7.290e-29 Identity = 72/125 (57.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 1 MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEAR-GVDGTPLHVAAAKGFHKGLVMLI 372
MPSTLSK A GS++ T+A + ID G GD ++TPLM AS +G RVVR LLR GA VSVAD+DG TALH S+ + LAVSK LI+AGAD+EAR G TPLHVAA KGF +G+ +L+
Sbjct: 1 MPSTLSK-----ASGSIDPTIA-----TTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM 115
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 118 bits (296), Expect = 3.330e-28 Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 1
Query: 1 MPSTLSK-LYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGYMRVVRVLLRVGARVSVADNDGATALHLSIVNKRLAVSKALIKAGADVEARG---------VDG-TPLHVAAAKGFHKGLVMLIHAAGGCSS 396
+PST S LY AA+ GSVERT+ LLSGG +ID + T LM A+ GY+R+VRVLLR GA VSV+ +DG TALH +I + LAV+KALIKAGA+VEA+ V G TPLH+AA +GF +G+V LI+A S
Sbjct: 13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDS 155
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.550e-14 Identity = 42/71 (59.15%), Postives = 49/71 (69.01%), Query Frame = 2
Query: 377 RQVDAVHSIS*CWP---------SVLEKSMPIVRMLPGLKRRASKPRVLLAALSRYNNKQDGPFLGYSPDK 562
RQ +AVHS+S WP + +K I RM+P LKRRA+KPRVLLAALSRYN KQDG FLGY P+K
Sbjct: 411 RQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEK 481
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI) HSP 1 Score: 69.3 bits (168), Expect = 8.700e-13 Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 2
Query: 452 MLPGLKRRASKPRVLLAALSRYNNKQDGPFLGYSPDKN 565
MLP LK RA+KPRVLLAA+SRYNNKQDGPFLGY P+KN
Sbjct: 1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKN 38
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 2.510e-12 Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 2
Query: 377 RQVDAVHSIS*CWP---------SVLEKSMPIVRMLPGLKRRASKPRVLLAALSRYNNKQDGPFLG 547
RQ +AVH++S WP + +KS I RMLP LKRRA+KPRVLLAA+SRYNNK DG FLG
Sbjct: 357 RQEEAVHAVSWTWPIDTGRSVERASRKKSTSIARMLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLG 422 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig92.16853.1 >prot_C-linearis_contig92.16853.1 ID=prot_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=187bp MPSTLSKLYAAAARGSVERTVALLSGGSVDIDGGYGDVSRTPLMAASTMGback to top mRNA from alignment at C-linearis_contig92:49487..50842- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig92.16853.1 ID=mRNA_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1356bp|location=Sequence derived from alignment at C-linearis_contig92:49487..50842- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig92:49487..50842- >mRNA_C-linearis_contig92.16853.1 ID=mRNA_C-linearis_contig92.16853.1|Name=mRNA_C-linearis_contig92.16853.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at C-linearis_contig92:49487..50842- (Chordaria linearis ClinC8C monoicous)back to top |