mRNA_C-linearis_contig92.16859.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16859.1
Unique NamemRNA_C-linearis_contig92.16859.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:141599..142140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16859.1prot_C-linearis_contig92.16859.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 141684..141989 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.6469069-UTR-C-linearis_contig92:141598..1416831622930790.6469069-UTR-C-linearis_contig92:141598..141683Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 141599..141683 +
1690881251.883532-UTR-C-linearis_contig92:141598..1416831690881251.883532-UTR-C-linearis_contig92:141598..141683Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 141599..141683 +
1622930790.6868825-UTR-C-linearis_contig92:141989..1421401622930790.6868825-UTR-C-linearis_contig92:141989..142140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 141990..142140 +
1690881251.909438-UTR-C-linearis_contig92:141989..1421401690881251.909438-UTR-C-linearis_contig92:141989..142140Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 141990..142140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.6687472-CDS-C-linearis_contig92:141683..1419891622930790.6687472-CDS-C-linearis_contig92:141683..141989Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 141684..141989 +
1690881251.89698-CDS-C-linearis_contig92:141683..1419891690881251.89698-CDS-C-linearis_contig92:141683..141989Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 141684..141989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16859.1

>prot_C-linearis_contig92.16859.1 ID=prot_C-linearis_contig92.16859.1|Name=mRNA_C-linearis_contig92.16859.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=102bp
MAPFETAIHMQEVGPRCLSRSEGCSSTLVCSLSRRFPRGVSRALSGENPA
WSIPASWRCEVSGPTIEACTIMNPPSPFWGRASEVCDVHGNSEVWINSPQ
S*
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mRNA from alignment at C-linearis_contig92:141599..142140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16859.1 ID=mRNA_C-linearis_contig92.16859.1|Name=mRNA_C-linearis_contig92.16859.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=542bp|location=Sequence derived from alignment at C-linearis_contig92:141599..142140+ (Chordaria linearis ClinC8C monoicous)
GATAACTTCGACCCCGCGGAAAGCGGATGAGCACGAAGAATATATAACCC
ATGGCTCTCTCTGAAAGTGCGAGACTAGAAAACAAATGGCGCCATTCGAG
ACGGCAATCCACATGCAAGAAGTAGGCCCAAGATGCCTATCACGCTCAGA
AGGATGCAGCTCGACTTTAGTGTGCTCGCTCTCGCGGCGTTTCCCGCGTG
GTGTTTCGCGAGCCTTGTCCGGTGAAAACCCGGCTTGGTCCATCCCGGCT
TCGTGGCGATGCGAGGTCTCTGGTCCAACGATTGAAGCATGCACGATTAT
GAATCCCCCCTCCCCCTTTTGGGGCAGAGCGTCGGAGGTGTGTGATGTGC
ATGGGAATTCTGAAGTTTGGATAAATTCCCCACAAAGCTGAAACACAGGA
AGGAACGTTGGCATGCATCGCGAAGCTACCTAGTATTGATGATGCAGCTA
GGAGTAGGAGCTGTTAGGTGTCCAAATAATTGAGGCAATTTGACGGAGGC
ACCCCCCACCGCCCGCTGTCGTCCCATCCGTGAAGACAGCAC
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Coding sequence (CDS) from alignment at C-linearis_contig92:141599..142140+

>mRNA_C-linearis_contig92.16859.1 ID=mRNA_C-linearis_contig92.16859.1|Name=mRNA_C-linearis_contig92.16859.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at C-linearis_contig92:141599..142140+ (Chordaria linearis ClinC8C monoicous)
ATGGCGCCATTCGAGACGGCAATCCACATGCAAGAAGTAGGCCCAAGATG
CCTATCACGCTCAGAAGGATGCAGCTCGACTTTAGTGTGCTCGCTCTCGC
GGCGTTTCCCGCGTGGTGTTTCGCGAGCCTTGTCCGGTGAAAACCCGGCT
TGGTCCATCCCGGCTTCGTGGCGATGCGAGGTCTCTGGTCCAACGATTGA
AGCATGCACGATTATGAATCCCCCCTCCCCCTTTTGGGGCAGAGCGTCGG
AGGTGTGTGATGTGCATGGGAATTCTGAAGTTTGGATAAATTCCCCACAA
AGCTGAATGGCGCCATTCGAGACGGCAATCCACATGCAAGAAGTAGGCCC
AAGATGCCTATCACGCTCAGAAGGATGCAGCTCGACTTTAGTGTGCTCGC
TCTCGCGGCGTTTCCCGCGTGGTGTTTCGCGAGCCTTGTCCGGTGAAAAC
CCGGCTTGGTCCATCCCGGCTTCGTGGCGATGCGAGGTCTCTGGTCCAAC
GATTGAAGCATGCACGATTATGAATCCCCCCTCCCCCTTTTGGGGCAGAG
CGTCGGAGGTGTGTGATGTGCATGGGAATTCTGAAGTTTGGATAAATTCC
CCACAAAGCTGA
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