mRNA_C-linearis_contig91.16822.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16822.1
Unique NamemRNA_C-linearis_contig91.16822.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig91.16822.1 vs. uniprot
Match: A0A6H5K6L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.410e-23
Identity = 61/129 (47.29%), Postives = 79/129 (61.24%), Query Frame = 1 
Query:    1 LQQAIMAFLRLRETVQDQKRKLQCFDDVPVHRDGLPGAAPRGTGGVVQATAIPAGARKGAGT--VLDKLLSKVDEELRSHLQFLRGNPYAALQLPPPRGACSTASNPGWEVTDTLVKNNYRRLALSFHP 381
            L  A + FLRLR  + ++K KLQ F+       G  G     T G+ +A A+    R  A    V+DKLLSKV+ ELR+HL+FL+ N +AALQLP PR A S  ++    ++D LVKNNYRRLAL FHP
Sbjct:   28 LHAATLGFLRLRIILHNEKSKLQTFEP------GGKGQTQNATQGMEEAQAMSPSNRASAKATCVVDKLLSKVERELRTHLRFLKSNHFAALQLPLPRRASSDRTSRIARISDALVKNNYRRLALQFHP 150
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6L8_9PHAE5.410e-2347.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:364363..366296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010620.1
Exons4
Model size460
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16822.1prot_C-linearis_contig91.16822.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 364363..366281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.2864082-CDS-C-linearis_contig91:364362..3644391622930784.2864082-CDS-C-linearis_contig91:364362..364439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 364363..364439 -
1690881248.4610698-CDS-C-linearis_contig91:364362..3644391690881248.4610698-CDS-C-linearis_contig91:364362..364439Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 364363..364439 -
1622930784.3046956-CDS-C-linearis_contig91:364887..3650591622930784.3046956-CDS-C-linearis_contig91:364887..365059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 364888..365059 -
1690881248.471032-CDS-C-linearis_contig91:364887..3650591690881248.471032-CDS-C-linearis_contig91:364887..365059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 364888..365059 -
1622930784.318554-CDS-C-linearis_contig91:365265..3654401622930784.318554-CDS-C-linearis_contig91:365265..365440Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 365266..365440 -
1690881248.4819477-CDS-C-linearis_contig91:365265..3654401690881248.4819477-CDS-C-linearis_contig91:365265..365440Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 365266..365440 -
1622930784.3345652-CDS-C-linearis_contig91:366261..3662811622930784.3345652-CDS-C-linearis_contig91:366261..366281Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 366262..366281 -
1690881248.4960246-CDS-C-linearis_contig91:366261..3662811690881248.4960246-CDS-C-linearis_contig91:366261..366281Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 366262..366281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930784.3496633-UTR-C-linearis_contig91:366281..3662961622930784.3496633-UTR-C-linearis_contig91:366281..366296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 366282..366296 -
1690881248.5077977-UTR-C-linearis_contig91:366281..3662961690881248.5077977-UTR-C-linearis_contig91:366281..366296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig91 366282..366296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16822.1

>prot_C-linearis_contig91.16822.1 ID=prot_C-linearis_contig91.16822.1|Name=mRNA_C-linearis_contig91.16822.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=148bp
MAFLRLRETVQDQKRKLQCFDDVPVHRDGLPGAAPRGTGGVVQATAIPAG
ARKGAGTVLDKLLSKVDEELRSHLQFLRGNPYAALQLPPPRGACSTASNP
GWEVTDTLVKNNYRRLALSFHPDKTGGTDSSPLFAAIRAAYETLAASR
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mRNA from alignment at C-linearis_contig91:364363..366296-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16822.1 ID=mRNA_C-linearis_contig91.16822.1|Name=mRNA_C-linearis_contig91.16822.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1934bp|location=Sequence derived from alignment at C-linearis_contig91:364363..366296- (Chordaria linearis ClinC8C monoicous)
CTGCAACAGGCCATCATGGCGTTTCTGAGGTTAAGGTGTGGCCTAATACA
CTAGGCCGGCCGGAGACAGATGGTTGGGATTGGCCACACAGCGTAGAACG
GTTACTCCGATGCGAGAATGTAGGAGCAACACAACGCTCTCTTTCAGGGC
GGAGTCGCTGCTTGTGTGTGGTCGGTCGTCCACATTTATTTATCTAGCGC
AAAACGTAAGAAGAGCCCGCCGTTGTTGCGGAAGGCCGATCGAAACGTCA
AATAGTCTCACGCCGTTGCGCATCTCGAGGACAACGTGTTGAGCACGAGG
AAGCACGGCGCGGCGGTACTACTTCACGGCACGGTTGTCTGCACATGCAG
CGGTTGGGCACACTTGGTGCGCCACCTGGTTTGGCCGACAAGCCACCTGG
TTTGGCCGACAAGTTTTTGTCTTGTTCTCTATCTCATTTTCCCGGCAAAA
CATCAGTCGCCACTCTCACTCGCGGACTCGACTTATTGTGATAGACAGGA
GGGCTAATCCCCTGCACTAAAGTAGTCAGCGCTGACTACTTTAGTGCAGG
GGATTAGCCCTCCTGTCTATCATATTGGGTCCCGGTTGCAGGACGCCTCG
CTGACTACTTTAGTGCAGGGGATTAGCCCTCCTGTCTATCATATTGGGTC
CCGGTTGCAGGACGCCTCGGAGCATTCAATTTAGTTCTCATCGTTCCGCC
GAGGACTCGGTGACGCCTGCACCCCGTCAGGTTCGGGACGCCCGAAACGC
AAGCTTGGGTCGGTCCTTCACGCCCTCCTTCGTTATTTCACTGGTCCCCG
TCTTACTGTCAATCCTCTCGCCCCCCCTCCCCTGCCTCCCCCCGTGTATC
CCGCAGAGAAACCGTGCAAGATCAGAAGAGGAAGCTGCAGTGTTTCGATG
ACGTACCTGTCCACCGCGACGGGCTACCGGGGGCCGCACCCAGAGGGACG
GGGGGAGTGGTTCAGGCTACGGCAATCCCGGCAGGAGCTAGGAAGGGGGC
TGGAACCGTCCTTGATAAGCTGTTGTCGAAGGCGAGAGCACTCTACCGGG
CAAAAAGCGGCGAAACCAGTTTTTAGCGACTGTTGTTGGTTGCGGCTCTT
TTGGAGTAGGAACGGTATTTCTTCGAAGAGTTGCGCGATGGAAGGCCAAC
AACCAAGGCAAGCAACACACCCTGTACCCGCCTCCGCCCTAACTCGTGGG
CCGCACACCGTTGGGGGGGTAACGGTTTGTTCCGCAGGTGGACGAAGAAC
TTCGATCACATCTCCAGTTCCTCCGAGGTAACCCTTACGCGGCGCTGCAG
CTACCTCCTCCACGTGGTGCCTGCAGTACGGCCTCCAACCCTGGGTGGGA
GGTAACCGACACGCTAGTGAAGAACAACTACCGGAGGCTGGCCTTGAGTT
TCCACCCCGGTGAGTAACGCCTCCTTCCCAAACAGGCTGTTTCGCAGAGG
CCATGTGGAATGTGTCGGCTTTCGCGTCGCCCGAGGAGGGAGACAGTCCG
TCACTGAGTACAATAGGCCCACAAAGAACGCTCAGCTGGTTGCCACCATC
GCGTCCAACTGACTGCGTCGTCCCAGTACACGGCAACAACCAGTTCCATG
GTGTGGGTGGCGTTCGTACGGCCTGCTTGGACCTGTAGTTGGTGGCGGCA
CGAGCTAACGCTTCAGTGCAGCGGCGCATCTACGGTGTCTCTACAGCAGT
GGCTCGTCACGGAACAGACACGGCAGCTCCGCTCTTCTGATGCTTCGACG
CTGATCCGTTTCCGCAAATCTACTACAGTACATCCCCCTTGCCCAATACC
GACCAACGTGCAACGCACACCTCTCACCCGCCGCCAACCCCCCCCCCCCC
TGCGCAGACAAGACGGGGGGGACGGACTCAAGCCCCCTGTTCGCGGCCAT
TCGCGCCGCCTACGAAACCCTCGCTGCTTCGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig91:364363..366296-

>mRNA_C-linearis_contig91.16822.1 ID=mRNA_C-linearis_contig91.16822.1|Name=mRNA_C-linearis_contig91.16822.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at C-linearis_contig91:364363..366296- (Chordaria linearis ClinC8C monoicous)
ATGGCGTTTCTGAGGTTAAGATGGCGTTTCTGAGGTTAAGAGAAACCGTG
CAAGATCAGAAGAGGAAGCTGCAGTGTTTCGATGACGTACCTGTCCACCG
CGACGGGCTACCGGGGGCCGCACCCAGAGGGACGGGGGGAGTGGTTCAGG
CTACGGCAATCCCGGCAGGAGCTAGGAAGGGGGCTGGAACCGTCCTTGAT
AAGCTGTTGTCGAAGAGAAACCGTGCAAGATCAGAAGAGGAAGCTGCAGT
GTTTCGATGACGTACCTGTCCACCGCGACGGGCTACCGGGGGCCGCACCC
AGAGGGACGGGGGGAGTGGTTCAGGCTACGGCAATCCCGGCAGGAGCTAG
GAAGGGGGCTGGAACCGTCCTTGATAAGCTGTTGTCGAAGGTGGACGAAG
AACTTCGATCACATCTCCAGTTCCTCCGAGGTAACCCTTACGCGGCGCTG
CAGCTACCTCCTCCACGTGGTGCCTGCAGTACGGCCTCCAACCCTGGGTG
GGAGGTAACCGACACGCTAGTGAAGAACAACTACCGGAGGCTGGCCTTGA
GTTTCCACCCCGGTGGACGAAGAACTTCGATCACATCTCCAGTTCCTCCG
AGGTAACCCTTACGCGGCGCTGCAGCTACCTCCTCCACGTGGTGCCTGCA
GTACGGCCTCCAACCCTGGGTGGGAGGTAACCGACACGCTAGTGAAGAAC
AACTACCGGAGGCTGGCCTTGAGTTTCCACCCCGACAAGACGGGGGGGAC
GGACTCAAGCCCCCTGTTCGCGGCCATTCGCGCCGCCTACGAAACCCTCG
CTGCTTCGCGGACAAGACGGGGGGGACGGACTCAAGCCCCCTGTTCGCGG
CCATTCGCGCCGCCTACGAAACCCTCGCTGCTTCGCGG
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