mRNA_C-linearis_contig9.16728.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16728.1
Unique NamemRNA_C-linearis_contig9.16728.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16728.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.570e-53
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:  151 MYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWASSGDALELAAELERGKETVKWELGAENILRSIMWASPEQILLARTYGGIVIQDNTCLTNRY 438
            MYRCIAESI+PQKLGPRGARKVRNMSRKVTGELWASSGDALEL AELERG ETVKWEL AENILRSIMWASPEQILLARTYGG+VIQDNTCLTNRY
Sbjct:    1 MYRCIAESIKPQKLGPRGARKVRNMSRKVTGELWASSGDALELVAELERGNETVKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNRY 96
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BLAST of mRNA_C-linearis_contig9.16728.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 3.530e-52
Identity = 92/146 (63.01%), Postives = 111/146 (76.03%), Query Frame = 1 
Query:    1 QVELQHVPACTMEACATVEHEQNLIPLDKLEKEWGDGIREMTRGGVKPHLMYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWASSGDALELAAELERGKETVKWELGAENILRSIMWASPEQILLARTYGGIVIQDNTCLTNRY 438
            +V L+H   C M+  A    + +++PL++LEK W D I+ MT GGV+P  MYRCI E+I+P+KLG RG RKVRNMS KV+   WAS  DALEL A+LERG  TVKWE  A ++LRSIMWASPEQI+LARTYGGIVIQDNTCL NRY
Sbjct:  725 KVNLEHHADCEMQHVAKKHKDDSVVPLEELEK-WADDIKSMTLGGVRPFTMYRCIGENIKPRKLGTRGVRKVRNMSDKVSRGRWASKTDALELVADLERGPATVKWESDANHVLRSIMWASPEQIMLARTYGGIVIQDNTCLINRY 869
[Close]
BLAST of mRNA_C-linearis_contig9.16728.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.320e-15
Identity = 46/123 (37.40%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:   70 LIPLDKLEKEWGDGIREMTRGGVKPHLMYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWASSGDALELAAEL-ERGKETVKWELGAENILRSIMWASPEQILLARTYGGIVIQDNTCLTNR 435
            ++P + LE  +   IR  T  G+K   MYR I+E ++P +LG  G +KV+        E W++  DAL+L +EL +     VK++    + L+ + W++ +Q + AR +GGIV+QDNT LTNR
Sbjct:    1 MVPGEDLEARFKGDIRRWTLAGLKQFDMYRLISELVKPLQLGEPGRQKVQR-------ECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNR 116
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLF6_ECTSI1.570e-5394.79Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE3.530e-5263.01SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JEJ0_9PHAE1.320e-1537.40SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3438656..3439335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.7
Seed ortholog evalue1.9e-45
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930762.5358522-CDS-C-linearis_contig9:3438655..34388681622930762.5358522-CDS-C-linearis_contig9:3438655..3438868Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3438656..3438868 +
1690881236.5861497-CDS-C-linearis_contig9:3438655..34388681690881236.5861497-CDS-C-linearis_contig9:3438655..3438868Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3438656..3438868 +
1622930762.556294-CDS-C-linearis_contig9:3439101..34393351622930762.556294-CDS-C-linearis_contig9:3439101..3439335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3439102..3439335 +
1690881236.6006753-CDS-C-linearis_contig9:3439101..34393351690881236.6006753-CDS-C-linearis_contig9:3439101..3439335Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3439102..3439335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16728.1prot_C-linearis_contig9.16728.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3438656..3439335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16728.1

>prot_C-linearis_contig9.16728.1 ID=prot_C-linearis_contig9.16728.1|Name=mRNA_C-linearis_contig9.16728.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=149bp
QVELQHVPACTMEACATVEHEQNLIPLDKLEKEWGDGIREMTRGGVKPHL
MYRCIAESIRPQKLGPRGARKVRNMSRKVTGELWASSGDALELAAELERG
KETVKWELGAENILRSIMWASPEQILLARTYGGIVIQDNTCLTNRYCK*
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mRNA from alignment at C-linearis_contig9:3438656..3439335+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16728.1 ID=mRNA_C-linearis_contig9.16728.1|Name=mRNA_C-linearis_contig9.16728.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at C-linearis_contig9:3438656..3439335+ (Chordaria linearis ClinC8C monoicous)
CAGGTCGAACTTCAACACGTCCCTGCCTGCACTATGGAAGCTTGCGCCAC
GGTTGAGCACGAGCAAAACTTGATTCCGTTGGATAAGCTCGAAAAAGAGT
GGGGTGATGGCATCCGCGAGATGACTCGGGGAGGCGTCAAACCTCACCTG
ATGTACCGTTGCATTGCAGAGTCCATCAGACCCCAAAAACTCGGGCCAAG
GGGTGCTCGCAAGGTGAGTTAGTGTCTGGGTTTAGCTTCATGCACTGAAG
CGGACGCTTCTGTAGAATAAATCGCTGGTTGGCGCCATTTTGAACAGGAA
ACGCCGCCAAACGGGCCAGCGTTCAACTAGAAGCACCCAAGGTATGACGC
TTCACGTTTTATCCTTGGCATGTGTTCCTTGCAGGCCCACTCAGGCAGAC
CTCGCAGCAACCCCAACCTTTTCGTCTTTGTGCGTGTCTGTCCCAGGTGC
GAAACATGTCGCGAAAGGTAACAGGTGAGCTATGGGCATCGTCTGGAGAC
GCCCTGGAACTCGCGGCAGAGCTGGAACGGGGGAAAGAGACGGTGAAGTG
GGAGCTAGGCGCGGAGAATATCTTGAGGTCCATTATGTGGGCCTCACCCG
AACAAATTCTTCTCGCGAGAACCTATGGCGGCATTGTCATCCAGGACAAC
ACATGCCTGACGAACAGGTATTGCAAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig9:3438656..3439335+

>mRNA_C-linearis_contig9.16728.1 ID=mRNA_C-linearis_contig9.16728.1|Name=mRNA_C-linearis_contig9.16728.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at C-linearis_contig9:3438656..3439335+ (Chordaria linearis ClinC8C monoicous)
CAGGTCGAACTTCAACACGTCCCTGCCTGCACTATGGAAGCTTGCGCCAC
GGTTGAGCACGAGCAAAACTTGATTCCGTTGGATAAGCTCGAAAAAGAGT
GGGGTGATGGCATCCGCGAGATGACTCGGGGAGGCGTCAAACCTCACCTG
ATGTACCGTTGCATTGCAGAGTCCATCAGACCCCAAAAACTCGGGCCAAG
GGGTGCTCGCAAGCAGGTCGAACTTCAACACGTCCCTGCCTGCACTATGG
AAGCTTGCGCCACGGTTGAGCACGAGCAAAACTTGATTCCGTTGGATAAG
CTCGAAAAAGAGTGGGGTGATGGCATCCGCGAGATGACTCGGGGAGGCGT
CAAACCTCACCTGATGTACCGTTGCATTGCAGAGTCCATCAGACCCCAAA
AACTCGGGCCAAGGGGTGCTCGCAAGGTGCGAAACATGTCGCGAAAGGTA
ACAGGTGAGCTATGGGCATCGTCTGGAGACGCCCTGGAACTCGCGGCAGA
GCTGGAACGGGGGAAAGAGACGGTGAAGTGGGAGCTAGGCGCGGAGAATA
TCTTGAGGTCCATTATGTGGGCCTCACCCGAACAAATTCTTCTCGCGAGA
ACCTATGGCGGCATTGTCATCCAGGACAACACATGCCTGACGAACAGGTA
TTGCAAGTAGGTGCGAAACATGTCGCGAAAGGTAACAGGTGAGCTATGGG
CATCGTCTGGAGACGCCCTGGAACTCGCGGCAGAGCTGGAACGGGGGAAA
GAGACGGTGAAGTGGGAGCTAGGCGCGGAGAATATCTTGAGGTCCATTAT
GTGGGCCTCACCCGAACAAATTCTTCTCGCGAGAACCTATGGCGGCATTG
TCATCCAGGACAACACATGCCTGACGAACAGGTATTGCAAGTAG
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