mRNA_C-linearis_contig9.16682.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16682.1
Unique NamemRNA_C-linearis_contig9.16682.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 2.470e-119
Identity = 169/240 (70.42%), Postives = 200/240 (83.33%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            R+AVALR+LAGASY+DV +++G+A +TV+ +LWEV+DAIN TP VG F FPQT  DC   A++W+A ST GVF+  VAA DGL +K  APS  DT NV S++SG+KSGYG+N+QATCD+NYRFC +SAIS GATNDW AWNRSS+S +VARLP  Y +LGDAAYPLSD LLTPYPGK L    DSFNFHLSQLRVKIEQ++GILVG WGILWRPLRVQFAGR+ LITALF LHN+LRDE+
Sbjct:  128 RLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPYPGKLLPRDEDSFNFHLSQLRVKIEQAYGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLRDEQ 367          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JUE6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE6_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 2.710e-117
Identity = 166/240 (69.17%), Postives = 200/240 (83.33%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            R+AVALR+LAGASYMDV +++G+A +TV+ +LWEV+DAIN TP VGPF FPQT  +C   A++W+A ST G  +  VAA DGL +K  APS  DT NV S++SG+KSGYG+N+QATCD+NYRFC +SAIS GATNDW AWNRS +S+AVARLP  Y +LGDAAYPLSD+LLTPYPGK L    D++NF+LSQLRVKIEQ+FGILVG WGILWRPLRVQFAGR+ LITALF LHN+LRDE+
Sbjct:  130 RLAVALRILAGASYMDVAVLFGIAKETVFHVLWEVVDAINNTPEVGPFFFPQTVEECARQAKEWEAKSTGGAISGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSELSRAVARLPPGYYMLGDAAYPLSDQLLTPYPGKLLPRDQDAYNFYLSQLRVKIEQAFGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLRDEQ 369          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JWD7_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWD7_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 1.100e-116
Identity = 163/232 (70.26%), Postives = 192/232 (82.76%), Query Frame = 1
Query:   25 LAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            LAGASY+DV +++G+A +TV+ +LWEV+DAIN TP VG F FPQT  DC   A++W+A ST GVF+  VAA DGL +K  APS  DT NV S++SG+KSGYG+N+QATCD+NYRFC +SAIS GATNDW AWNRSS+S +VARLP  Y +LGDAAYPLSD LLTPYPGK L    DSFNFHLSQLRVKIEQ++GILVG WGILWRPLRVQFAGR+ LITALF LHN+LRDE+
Sbjct:    2 LAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGYYVLGDAAYPLSDHLLTPYPGKLLPRDEDSFNFHLSQLRVKIEQAYGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLRDEQ 233          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JY47_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY47_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 3.770e-113
Identity = 160/232 (68.97%), Postives = 192/232 (82.76%), Query Frame = 1
Query:   25 LAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            LAGASY+DV +++G+A +TV+ +LWEV+DAI  TP VG F FPQT+ DC   A++W+A ST GVF+  VAA DGL +K  APS  DT NV S++SG+KSGYG+N+QATCD+NYRFC +SAIS GATNDW AWNRSS+S +VARLP  + +LG+AAYPLSD LLTPYPGK L    DSFNFHLSQLRVKIEQ++GILVG WGILWRPLRVQFAGR+ LITALF LHN+LRDE+
Sbjct:    2 LAGASYLDVAVLFGIAKETVFHVLWEVVDAIKNTPEVGAFFFPQTKDDCARQAKEWEAKSTGGVFSGCVAAGDGLFVKTIAPSPVDTPNVLSYFSGNKSGYGLNIQATCDANYRFCSMSAISAGATNDWTAWNRSSLSDSVARLPPGFYVLGEAAYPLSDHLLTPYPGKLLPRDEDSFNFHLSQLRVKIEQAYGILVGQWGILWRPLRVQFAGRSALITALFRLHNYLRDEQ 233          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5K9T7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T7_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 1.050e-112
Identity = 164/240 (68.33%), Postives = 195/240 (81.25%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            RVAVALR+LAGASY DV +++G++  T Y ILW VIDAINKTP+VG F FP TE  C  +A  ++  ST+G+F+ VVAA DGL IK +AP A DTANV ++YSG KS YGINVQA C ++YRFC +SAISPG+TNDW AWNRSS++KAVARLP  + I+GDAAYP+ +KLLTP PG+ L PG DSFNFHLSQLRVKIEQSFGILV  WGI WRPLRVQF GR  LITALF+LH+FL+DE+
Sbjct:   16 RVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCVRNANIFKEKSTDGIFSWVVAAVDGLFIKAKAPCAKDTANVIAYYSGRKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPSPGRLLPPGEDSFNFHLSQLRVKIEQSFGILVSTWGIQWRPLRVQFGGRADLITALFYLHHFLQDEK 255          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 4.600e-112
Identity = 158/240 (65.83%), Postives = 197/240 (82.08%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            R+AVALR+ AGASY+DV +++G+A ++V+ ++W+V+DAIN TP+VGPF FPQT  +C   A +W+  ST G FA  VAA DGL +K  AP+  +T NV SF+SG K+GYG+N+QATCD+NYRFC +SAI+ G+TNDW AWNRS +S +VARLP  + +LGDAAYPLSD+LLTPYPGK L    D+FNF+LSQLRVKIEQ+FGILVG WGILWRPLRVQFAGR+GLITALF LHNFL DE+
Sbjct:  127 RLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAREWEVKSTGGAFAGCVAAGDGLFVKTFAPTVVNTPNVLSFFSGHKNGYGLNIQATCDANYRFCSMSAIAAGSTNDWTAWNRSELSDSVARLPPGFYMLGDAAYPLSDQLLTPYPGKLLPRDQDAFNFYLSQLRVKIEQAFGILVGQWGILWRPLRVQFAGRSGLITALFRLHNFLCDEK 366          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5JD50_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD50_9PHAE)

HSP 1 Score: 337 bits (865), Expect = 5.370e-112
Identity = 163/240 (67.92%), Postives = 197/240 (82.08%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            RVA ALR+LAG SY DV +++G++    + ILW+VIDAIN+TP++G F FP TE  C  +A +++  ST+G+F+ VVAA DGL IK +AP A DTANV ++YSGSKS YGINVQA C ++YRFC +SAISPG+TNDW AWNRSS++KAVARLP  + I+GDAAYP+ +KLLTPYPG+ L  G DSFNFHLSQLRVKIEQSFGILV  WGILWRPLRVQFAGR  LITALFHLHNFL+DE+
Sbjct:  136 RVAAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINETPAIGAFDFPLTEEGCMRNANRFKEKSTDGIFSWVVAAVDGLFIKAKAPYAKDTANVLAYYSGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQFAGRADLITALFHLHNFLQDEK 375          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5L3C4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3C4_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 6.470e-112
Identity = 164/240 (68.33%), Postives = 196/240 (81.67%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            RVAVALR+LAGASY DV +++G++  T Y ILW VIDAINKT +VG F FP TE  C  +A +++  ST+G+F+ VVAA DGL IK +AP A DTANV ++YSGSKS YGINVQA C ++YRFC +SAISPG+TNDW AWNRSS++KAVARLP  + I+GDAAYP+ +KLLTPYPG+ L PG DSFNFHLSQ+RV IEQSFGILV  WGILWRPL VQ+ GR  LITALFHLHNFL+DE+
Sbjct:  176 RVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTRAVGAFDFPLTEEGCMRNANRFKEKSTDGIFSWVVAAVDGLFIKAKAPCAKDTANVIAYYSGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEKLLTPYPGRLLPPGEDSFNFHLSQVRVMIEQSFGILVATWGILWRPLHVQYGGRADLITALFHLHNFLQDEK 415          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.490e-111
Identity = 164/240 (68.33%), Postives = 192/240 (80.00%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            R+AVALR+LAGASY+DV +++G+   TVY  LW VIDAIN TP VG F FPQTE DC+  A +++  STNG+F+  VA  DGL +K  APS  DTANV ++YSG K  YGINVQA C ++YRFC +SAI+PGATNDW AW RS +S+AV RLP  + +LGDAAYPLS++LLTPYPGK L  G DSFNFHLSQLRVKIEQSFGILVG WGILWRPL+V FAGRT LITALF LHNFLRDE+
Sbjct:  126 RLAVALRILAGASYLDVAVMFGLGLPTVYATLWMVIDAINSTPEVGAFFFPQTEFDCRGHAARFKRKSTNGIFSFCVACVDGLFVKTLAPSPKDTANVIAYYSGQKCAYGINVQAMCTADYRFCSMSAITPGATNDWAAWLRSKLSRAVNRLPKGFYVLGDAAYPLSEQLLTPYPGKNLPLGEDSFNFHLSQLRVKIEQSFGILVGTWGILWRPLKVDFAGRTDLITALFRLHNFLRDEQ 365          
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Match: A0A6H5KNZ9_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNZ9_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.060e-109
Identity = 162/240 (67.50%), Postives = 193/240 (80.42%), Query Frame = 1
Query:    1 RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRFPQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTSFYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVARLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQSFGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER 720
            RVAVAL +LA ASY DV +++G++    Y +LWEVIDAIN TP+VGPF FP TE  C  +A +++  ST+G+F+ VVAA DGL IK  AP A +T NV ++YSGSKS YGINVQA C ++YRFC +SAISPG+TNDW AWNRSS++KAVARLP  + I+GDAAYP+ +KLLTPYPG+ L  G DSFNFHLSQLRVKIEQSFGILV  WGILWRPLRVQ  GR  LITALFHLHNFL+DE+
Sbjct:  139 RVAVALTILADASYWDVLLMFGLSVAVTYLVLWEVIDAINNTPAVGPFAFPLTEKGCMRNANRFKDKSTDGIFSWVVAAVDGLFIKAEAPRAKETKNVIAYYSGSKSAYGINVQAMCTADYRFCAMSAISPGSTNDWVAWNRSSLAKAVARLPTGFHIIGDAAYPIGEKLLTPYPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQLGGRADLITALFHLHNFLQDEK 378          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHK3_9PHAE2.470e-11970.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUE6_9PHAE2.710e-11769.17DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JWD7_9PHAE1.100e-11670.26DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JY47_9PHAE3.770e-11368.97DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K9T7_9PHAE1.050e-11268.33DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JDE6_9PHAE4.600e-11265.83DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JD50_9PHAE5.370e-11267.92DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5L3C4_9PHAE6.470e-11268.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L386_9PHAE1.490e-11168.33DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KNZ9_9PHAE1.060e-10967.50DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2809606..2810953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue2.6e-36
Seed eggNOG ortholog4792.ETI53258
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nuclease activity
EggNOG OGs3QI3U@4776,KOG4585@1,KOG4585@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size720
Cds size720
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930755.0921595-CDS-C-linearis_contig9:2809605..28101301622930755.0921595-CDS-C-linearis_contig9:2809605..2810130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2809606..2810130 -
1690881232.6078746-CDS-C-linearis_contig9:2809605..28101301690881232.6078746-CDS-C-linearis_contig9:2809605..2810130Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2809606..2810130 -
1622930755.1139245-CDS-C-linearis_contig9:2810758..28109531622930755.1139245-CDS-C-linearis_contig9:2810758..2810953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2810759..2810953 -
1690881232.6181626-CDS-C-linearis_contig9:2810758..28109531690881232.6181626-CDS-C-linearis_contig9:2810758..2810953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 2810759..2810953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16682.1prot_C-linearis_contig9.16682.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 2809606..2810953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16682.1

>prot_C-linearis_contig9.16682.1 ID=prot_C-linearis_contig9.16682.1|Name=mRNA_C-linearis_contig9.16682.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
RVAVALRVLAGASYMDVGIIYGVAFQTVYPILWEVIDAINKTPSVGPFRF
PQTEADCKVSAEKWQALSTNGVFANVVAAADGLLIKIRAPSATDTANVTS
FYSGSKSGYGINVQATCDSNYRFCQVSAISPGATNDWNAWNRSSISKAVA
RLPGNYCILGDAAYPLSDKLLTPYPGKALEPGYDSFNFHLSQLRVKIEQS
FGILVGVWGILWRPLRVQFAGRTGLITALFHLHNFLRDER
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mRNA from alignment at C-linearis_contig9:2809606..2810953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16682.1 ID=mRNA_C-linearis_contig9.16682.1|Name=mRNA_C-linearis_contig9.16682.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1348bp|location=Sequence derived from alignment at C-linearis_contig9:2809606..2810953- (Chordaria linearis ClinC8C monoicous)
CGGGTAGCGGTGGCGCTGCGGGTGCTGGCGGGAGCTTCGTACATGGATGT TGGTATCATCTACGGGGTTGCGTTTCAAACGGTGTATCCAATCCTGTGGG AGGTTATCGACGCCATCAACAAAACACCTTCAGTAGGACCGTTCAGGTTC CCCCAAACGGAGGCAGACTGCAAAGTCTCGGCGGAAAAGTGGCAGGTGTG TCGCGTTCGCTCTTGCATGCACCTACCTCGGGATCGTCGTACTATTAAAA ATCAAGCACTATCCGTGCCACCCACATAAGTTCACCGGGTATGTCTCAAG TTGGGCTGTGAAGACGGTGTTTTAACGCCATCTCGGTAAACCAGCGTATC GTGTTGCTTCCTCCAATACCTACCGCTAGGAATTTTGCAGAGCCATGTTG GGCTTTAGCCCCCGCCTGATGTCATACGAAGTATAGGTTGAAGGCCTCCT TCGTAGTTTGTTCCCGGGCTGTTCCGGGCTTGTTTTCGGCGCTGGGCACG TGGCGTGTGAACTCCATGAGTAAAAAAAACTGTGTGTGATGCGACAAGAT GAACCAACCGTTGTTAGACGCTGATAGATGGAGTCATGACATATAATCCA GGTGGAATTATCGTCTCCCAGTTTTTCCCAGACCCACGTGTTTCAACCCA GCACAATCATTAGTGATAAAATGTGTATATTTTACTAGTCCATCCCGCTG GCGGTGGCCGTCGCAGTCATTTTGAAATGCTCTAGATAAAGGGCTCGTAG GCAAGAGAAACAATAATACTTCTACCTAATCATGGGCGCCGTCTCCCTCT CTTCCCGTCTCGACGCGTGCCAGGCGTTGAGCACGAATGGCGTCTTCGCT AATGTGGTAGCGGCCGCAGACGGCTTGTTGATCAAGATTCGGGCACCGTC CGCGACGGATACTGCGAACGTCACGTCGTTCTACTCTGGCAGCAAATCGG GGTACGGCATCAACGTTCAAGCTACGTGCGACTCCAACTACCGTTTCTGC CAGGTGTCCGCTATATCGCCAGGGGCGACCAACGACTGGAATGCTTGGAA CCGCTCTAGCATTAGTAAGGCGGTGGCCCGTTTGCCTGGCAACTACTGCA TCCTCGGGGACGCCGCCTATCCCTTGAGCGACAAGCTCCTCACGCCGTAT CCAGGAAAGGCGCTTGAACCAGGGTACGACTCTTTCAACTTCCACCTGAG CCAGTTAAGAGTGAAGATCGAACAGAGCTTCGGCATCCTCGTAGGTGTAT GGGGTATCCTGTGGCGGCCGCTCAGAGTCCAGTTCGCCGGACGCACGGGT CTCATCACTGCCCTGTTTCACCTCCACAACTTTCTGAGGGACGAGAGG
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Coding sequence (CDS) from alignment at C-linearis_contig9:2809606..2810953-

>mRNA_C-linearis_contig9.16682.1 ID=mRNA_C-linearis_contig9.16682.1|Name=mRNA_C-linearis_contig9.16682.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at C-linearis_contig9:2809606..2810953- (Chordaria linearis ClinC8C monoicous)
CGGGTAGCGGTGGCGCTGCGGGTGCTGGCGGGAGCTTCGTACATGGATGT
TGGTATCATCTACGGGGTTGCGTTTCAAACGGTGTATCCAATCCTGTGGG
AGGTTATCGACGCCATCAACAAAACACCTTCAGTAGGACCGTTCAGGTTC
CCCCAAACGGAGGCAGACTGCAAAGTCTCGGCGGAAAAGTGGCAGCGGGT
AGCGGTGGCGCTGCGGGTGCTGGCGGGAGCTTCGTACATGGATGTTGGTA
TCATCTACGGGGTTGCGTTTCAAACGGTGTATCCAATCCTGTGGGAGGTT
ATCGACGCCATCAACAAAACACCTTCAGTAGGACCGTTCAGGTTCCCCCA
AACGGAGGCAGACTGCAAAGTCTCGGCGGAAAAGTGGCAGGCGTTGAGCA
CGAATGGCGTCTTCGCTAATGTGGTAGCGGCCGCAGACGGCTTGTTGATC
AAGATTCGGGCACCGTCCGCGACGGATACTGCGAACGTCACGTCGTTCTA
CTCTGGCAGCAAATCGGGGTACGGCATCAACGTTCAAGCTACGTGCGACT
CCAACTACCGTTTCTGCCAGGTGTCCGCTATATCGCCAGGGGCGACCAAC
GACTGGAATGCTTGGAACCGCTCTAGCATTAGTAAGGCGGTGGCCCGTTT
GCCTGGCAACTACTGCATCCTCGGGGACGCCGCCTATCCCTTGAGCGACA
AGCTCCTCACGCCGTATCCAGGAAAGGCGCTTGAACCAGGGTACGACTCT
TTCAACTTCCACCTGAGCCAGTTAAGAGTGAAGATCGAACAGAGCTTCGG
CATCCTCGTAGGTGTATGGGGTATCCTGTGGCGGCCGCTCAGAGTCCAGT
TCGCCGGACGCACGGGTCTCATCACTGCCCTGTTTCACCTCCACAACTTT
CTGAGGGACGAGAGGGCGTTGAGCACGAATGGCGTCTTCGCTAATGTGGT
AGCGGCCGCAGACGGCTTGTTGATCAAGATTCGGGCACCGTCCGCGACGG
ATACTGCGAACGTCACGTCGTTCTACTCTGGCAGCAAATCGGGGTACGGC
ATCAACGTTCAAGCTACGTGCGACTCCAACTACCGTTTCTGCCAGGTGTC
CGCTATATCGCCAGGGGCGACCAACGACTGGAATGCTTGGAACCGCTCTA
GCATTAGTAAGGCGGTGGCCCGTTTGCCTGGCAACTACTGCATCCTCGGG
GACGCCGCCTATCCCTTGAGCGACAAGCTCCTCACGCCGTATCCAGGAAA
GGCGCTTGAACCAGGGTACGACTCTTTCAACTTCCACCTGAGCCAGTTAA
GAGTGAAGATCGAACAGAGCTTCGGCATCCTCGTAGGTGTATGGGGTATC
CTGTGGCGGCCGCTCAGAGTCCAGTTCGCCGGACGCACGGGTCTCATCAC
TGCCCTGTTTCACCTCCACAACTTTCTGAGGGACGAGAGG
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