mRNA_C-linearis_contig9.16734.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig9.16734.1
Unique NamemRNA_C-linearis_contig9.16734.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig9.16734.1 vs. uniprot
Match: A0A6H5JZM6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM6_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-10
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 3 
Query:   30 LQSTITRMQALVNMKIDEVTAGHGE--PDSFTLDLMEKLFNVTDRQPRETSSFKRKSSSXXXXXXXXXXXXXXXX-------GKRPQR-ERPRCGYPGCKKPLGHTTTTCFQKKRDEA 353
            L ST++++Q++V+  +D VT G  E  PD   + LM+++F    +    T +F+  SS XXXXXXXXXX              +RP R ERPRC +P C KPLGHTT TCFQKKR+EA
Sbjct:   97 LTSTLSKIQSVVDRHLDLVTDGRLEQLPD-HVVQLMDRMFEHHRQNRGRTPAFQSGSSXXXXXXXXXXXAPRHGTHRGXXGNSRRPVRKERPRCTHPTCDKPLGHTTATCFQKKREEA 213
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZM6_9PHAE1.090e-1046.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3552659..3554028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size521
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16734.1prot_C-linearis_contig9.16734.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig9 3552755..3554028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.2185478-UTR-C-linearis_contig9:3552658..35527541622930705.2185478-UTR-C-linearis_contig9:3552658..3552754Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3552659..3552754 +
1690881206.5730722-UTR-C-linearis_contig9:3552658..35527541690881206.5730722-UTR-C-linearis_contig9:3552658..3552754Chordaria linearis ClinC8C monoicousUTRC-linearis_contig9 3552659..3552754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.2343743-CDS-C-linearis_contig9:3552754..35527981622930705.2343743-CDS-C-linearis_contig9:3552754..3552798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3552755..3552798 +
1690881206.583483-CDS-C-linearis_contig9:3552754..35527981690881206.583483-CDS-C-linearis_contig9:3552754..3552798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3552755..3552798 +
1622930705.2507827-CDS-C-linearis_contig9:3553649..35540281622930705.2507827-CDS-C-linearis_contig9:3553649..3554028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3553650..3554028 +
1690881206.5953772-CDS-C-linearis_contig9:3553649..35540281690881206.5953772-CDS-C-linearis_contig9:3553649..3554028Chordaria linearis ClinC8C monoicousCDSC-linearis_contig9 3553650..3554028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig9.16734.1

>prot_C-linearis_contig9.16734.1 ID=prot_C-linearis_contig9.16734.1|Name=mRNA_C-linearis_contig9.16734.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MGNRTASPWTLWRSCLMSPTVNPARLAPSRESRRLAVAPPVVELAPVEPT
PASVRSANVPAAGIPAAKSLWGTPRRRASRRSATRPGRRAVTWTPTPAVA
VAAASAPRKTPTPTNRVPSCSSACCSWVCSWCSQERREEED
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mRNA from alignment at C-linearis_contig9:3552659..3554028+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig9.16734.1 ID=mRNA_C-linearis_contig9.16734.1|Name=mRNA_C-linearis_contig9.16734.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1370bp|location=Sequence derived from alignment at C-linearis_contig9:3552659..3554028+ (Chordaria linearis ClinC8C monoicous)
GCTTCGATGACAGTAGAGGCGGTCACCCTCTCCAGTCGACCATCACCCGC
ATGCAGGCGCTGGTCAACATGAAAATTGACGAAGTAACCGCCGGCCATGG
GGAACCGGACAGCTTCACCCTGGACCTTATGGAGAAGCTGGTGAGCCTCC
AGCGTGTTTCTAGTGTGGGTGGTAGCAGTGTTGTTGGGTCTCCTGTCACC
CCCTCTCCACTCCTCAACCCGTCCGTGCAAGACCTCACTAGGTCGTTTGC
TCAAGCTCTGTCTCAACGCAAGAAACACATCGGGCTCACTTCCACCGACG
TCAAGCAAATTCCCCGCTTGACCGGTCTTGCTGACGTTGATGTCAACAGC
GTCCTCACTCAGTTCCGCCTGATCGCTTCCTTCAAAACCAAAGCCGCTCT
TTCGTCCGACTGCTCTGTAGCAGAACTAGAGCGGTACGGAGATGAAGTAG
CGTTCGAACATTTGTCGCTCATCTGTGACGGGCCTATTCTTATGGTGTAC
CAGCAACTCATGTCGGGGAGTATTGACTGGAAAGCCTCTGTCGTGTCGGC
TGAGTCGGCTCAGGTAGCTGGGTCGTATGTCCCGCCTGCCAATTGGTCCG
AGCTGAAATCCGCGCTGCTCGACCTTCTCATGCCGTCCAACTGTGTCGGA
AGAAAGTGCCCTCCGCTTAGCCACTTTCAAACAATCGTCTAGTGAAACTG
TCAGCGCGTACGCCCTTCGATGCCAACAAGAATGTAACCGGTTCGAAGGT
GCCGTCAAGCGTGTCACCCCCGAGCGTTCGCCGTGGGCGGCGCTCTCTGT
CAATTCTTTTCCAGAACGGTCTAAACCCCGCTGTCAAGTGTCTCTCTCTG
TCTGACAAGCCTTGCCGCACCATGCGTGAAGCAACCGACCGCGCCCGTCG
TCATGACGCCGCAAACCTCACGGGTTCCAACCCCACTGTCAGCGCTGTGT
CATTCACCCAAATCCCCAACCGTGTCGCTATCGCCAAACAGTTTAATGTC
ACCGACCGTCAACCCCGCGAGACTAGCTCCTTCAAGAGAAAGTCGTCGTC
TCGCGGTGGCTCCTCCGGTGGTCGAGCTGGCTCCAGTGGAGCCAACTCCG
GCAAGCGTCCGCAGCGCGAACGTCCCCGCTGCGGGTATCCCGGCTGCAAA
AAGCCTCTGGGGCACACCACGACGACGTGCTTCCAGAAGAAGCGCGACGA
GGCCAGGGAGAAGGGCGGTGACGTGGACACCAACACCAGCAGTGGCCGTG
GCGGCGGCAAGCGCGCCAAGAAAGACTCCAACCCCGACGAATAGGGTGCC
CAGTTGCAGTAGCGCCTGCTGTAGTTGGGTCTGTTCCTGGTGTAGCCAGG
AAAGGCGTGAAGAGGAAGAT
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Coding sequence (CDS) from alignment at C-linearis_contig9:3552659..3554028+

>mRNA_C-linearis_contig9.16734.1 ID=mRNA_C-linearis_contig9.16734.1|Name=mRNA_C-linearis_contig9.16734.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at C-linearis_contig9:3552659..3554028+ (Chordaria linearis ClinC8C monoicous)
ATGGGGAACCGGACAGCTTCACCCTGGACCTTATGGAGAAGCTGATGGGG
AACCGGACAGCTTCACCCTGGACCTTATGGAGAAGCTGTTTAATGTCACC
GACCGTCAACCCCGCGAGACTAGCTCCTTCAAGAGAAAGTCGTCGTCTCG
CGGTGGCTCCTCCGGTGGTCGAGCTGGCTCCAGTGGAGCCAACTCCGGCA
AGCGTCCGCAGCGCGAACGTCCCCGCTGCGGGTATCCCGGCTGCAAAAAG
CCTCTGGGGCACACCACGACGACGTGCTTCCAGAAGAAGCGCGACGAGGC
CAGGGAGAAGGGCGGTGACGTGGACACCAACACCAGCAGTGGCCGTGGCG
GCGGCAAGCGCGCCAAGAAAGACTCCAACCCCGACGAATAGGGTGCCCAG
TTGCAGTAGCGCCTGCTGTAGTTGGGTCTGTTCCTGGTGTAGCCAGGAAA
GGCGTGAAGAGGAAGATTTTAATGTCACCGACCGTCAACCCCGCGAGACT
AGCTCCTTCAAGAGAAAGTCGTCGTCTCGCGGTGGCTCCTCCGGTGGTCG
AGCTGGCTCCAGTGGAGCCAACTCCGGCAAGCGTCCGCAGCGCGAACGTC
CCCGCTGCGGGTATCCCGGCTGCAAAAAGCCTCTGGGGCACACCACGACG
ACGTGCTTCCAGAAGAAGCGCGACGAGGCCAGGGAGAAGGGCGGTGACGT
GGACACCAACACCAGCAGTGGCCGTGGCGGCGGCAAGCGCGCCAAGAAAG
ACTCCAACCCCGACGAATAGGGTGCCCAGTTGCAGTAGCGCCTGCTGTAG
TTGGGTCTGTTCCTGGTGTAGCCAGGAAAGGCGTGAAGAGGAAGAT
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