prot_C-linearis_contig9.16659.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16659.1
Unique Nameprot_C-linearis_contig9.16659.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length470
Homology
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BLAST of mRNA_C-linearis_contig9.16659.1 vs. uniprot
Match: D7FVG4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG4_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 1.240e-39
Identity = 262/455 (57.58%), Postives = 289/455 (63.52%), Query Frame = 0 
Query:   14 GLGRAPAFATSLLRINANGAAARQARGPPAEAANRSLAILPRRRTGAAGRGRADAPARRDASAHHRK--RPERRQEDSIRRFQPFGRAGSEGAKVAERLYEDFGMSGRKEYSAEAADERKFLLKWLEEEVRMGARGIADMVEQEPRLAEQDKEAVSARLRWLKERLMLSDEQIRSLVHRRPSVLCRSVEDGMEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDEVDIRKTLFRNPRMFLTPMRPTYASVKKWLCQSMGMQEEEAIRVVTRDARILLRSTEVLASKVAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPRAEALKEAGVEVSFALHWNELAFGPRGHEFDAWVSRQARR 466
            G+GRAP FA+SL+R       A  A   P EA  RSLA +  RR G + RGR D  A R + A  ++  RP+ R  D+ R FQPFGRAG EG+KVAERLYEDFG++  K+YS EA DERK +L WLE +VRM +R IADMVEQEPR+AEQ+  A+SARL                     PSVLCRSV+D MEP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                     +LLRSTEVL +KVAF                              LAPR   LK+AGV+VSF+ HWN+LAFGPRG  FD WV RQA R
Sbjct:    3 GVGRAPGFASSLVRCGG----AHNAWLTPKEANLRSLATVAERRRGGS-RGRGDGHAGRGSVAQAKRAGRPQHRNADAPR-FQPFGRAGGEGSKVAERLYEDFGINNLKKYSPEATDERKRVLTWLEGKVRMSSRAIADMVEQEPRIAEQETGAISARLXXXXXXXXXXXXXXXXXXXXXPSVLCRSVDDSMEPKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLRSTEVLDAKVAFFCQEMGATLEDVRAVLMTSPNFLLISIDLMLAPRVATLKDAGVKVSFSAHWNDLAFGPRGEAFDFWVRRQASR 451
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16659.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVG4_ECTSI1.240e-3957.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 259..291
e-value: 0.022
score: 24.0
coord: 149..180
e-value: 670.0
score: 5.2
coord: 222..254
e-value: 4.2
score: 16.3
coord: 297..328
e-value: 2.1
score: 17.3
coord: 370..401
e-value: 1.2
score: 18.2
coord: 406..437
e-value: 24.0
score: 13.8
coord: 185..217
e-value: 0.0024
score: 27.1
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 298..444
e-value: 1.4E-13
score: 50.5
coord: 143..286
e-value: 9.7E-16
score: 57.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 122..237
e-value: 2.8E-16
score: 61.5
coord: 238..442
e-value: 1.3E-29
score: 105.2
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 251..329
coord: 166..247
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 352..433
NoneNo IPR availablePANTHERPTHR13068:SF131coord: 251..329
coord: 166..247
NoneNo IPR availablePANTHERPTHR13068:SF131coord: 352..433

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2484468..2487080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16659.1mRNA_C-linearis_contig9.16659.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2483603..2487958 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16659.1 ID=prot_C-linearis_contig9.16659.1|Name=mRNA_C-linearis_contig9.16659.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=470bp
MFLAGSSARGLATGLGRAPAFATSLLRINANGAAARQARGPPAEAANRSL
AILPRRRTGAAGRGRADAPARRDASAHHRKRPERRQEDSIRRFQPFGRAG
SEGAKVAERLYEDFGMSGRKEYSAEAADERKFLLKWLEEEVRMGARGIAD
MVEQEPRLAEQDKEAVSARLRWLKERLMLSDEQIRSLVHRRPSVLCRSVE
DGMEPKVRWLQEELDLSDAEVAAMVASAPNVLTISIQDSMAPKLGWLSRR
LMLSNEQLAMVVTSCPQVLTSSIEGALEPRLKWLQTHLQIGGSVLRERVL
TFPWLLNLSEKGKLAPTYDFLKKELLLDEVDIRKTLFRNPRMFLTPMRPT
YASVKKWLCQSMGMQEEEAIRVVTRDARILLRSTEVLASKVAFFCQEMGA
TLEDVRAVLLTSPNLLLVSVELMLAPRAEALKEAGVEVSFALHWNELAFG
PRGHEFDAWVSRQARRSGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf