prot_C-linearis_contig89.16431.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig89.16431.1
Unique Nameprot_C-linearis_contig89.16431.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length615
Homology
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Match: D7FVA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVA8_ECTSI)

HSP 1 Score: 523 bits (1347), Expect = 6.530e-176
Identity = 345/633 (54.50%), Postives = 423/633 (66.82%), Query Frame = 0
Query:    6 LRPVVPMC--LAPSENTK-GVFKHRMFTLNNFGRKTALSKEEGSGISDVARDEENFRSSLKRNIAQLSNLARVNKEELARLREQMKAKDDEILALKGENARVERADRQEEVREGDLVSSQKNANPKARLRNVVAYGNMTIKASRLAAETRERLKKAAEEPSEQDRLDEGMAVAAMGASHTEQQLLRASREIRGQLERALQEAEALRADNVTSKSRANIAEKGKADLEARVAWLSDEVKLQTAPLMALRLELTQARSDTEMMRQRLKEERRESRIRVGDLEKASVDATQRIERLEFDLNEATKALQRESLKASTFEGMFREASTATKVLHEEVEQRQADAKRIAQELTRMQMEGD---------------------RPMGQFQDEEIASENLVVEKQQQAVISALKASIAKLHLEKAKSNDDAVKQLQKLRGEAEERERAFKEAKERAESYAEENSRLRLAAEKQEEE---QRQRDQERHDREVQHEKETRARNLQFKSLRARLCRTLDRLSEAEEAGELAITCLECAKLFKDPLVMAPCGHTLCADCSRGGALGQPGEGGSGWVLGGGDGGGDSTARAKNTCPVCVKQEGGAGVAEESSCVGSAPSRELATLVTKFVFRRQLLESLKETGALL 611
            LRP VP     AP+E+ +  V KHR F   +FGR  A S E G    ++A+D+ENFR+ LKRNI  LSNL RVN+E+LARLREQ+KAKD EI +LK     V + DRQ++  E     S++    +   R +V YG M + A RLA+E R+R +KA  +PSE++ L+   AVAAMGA HTEQQLLRASR++RGQLERALQEAEALRADN+  K+R N+AEK KA LE RVA LSDEVKLQ APL AL+LELTQ RSDTE MRQRLKEERRESR+RV D +KA  +A QRI+ LEFDLNE  KA QRESLKASTFEGM++EAST   +L  EVEQ + DAK IAQELTRMQ+E +                     R +G    +E+ +  L  E  Q+A I++LK  IA+L  EK+ S D     L+  R E EERERAFKE +++A+S+AEEN  LR   EKQEEE   QR  + ERHDR+++ E     +NL   SLR RLCRT+D L  AEEAGEL +TC  CAKLFKDP  MAPCGHTLCA C  GG  G   E G+G V GG      S   A+  C +C +Q  G G  +  +CVG AP+R LA++V KF FRRQL+++LKE GA L
Sbjct:   16 LRPAVPASRPTAPTESKRTSVLKHRTFAPKSFGRNKAPSGEGGKDDIEIAKDDENFRNGLKRNIIHLSNLTRVNQEQLARLREQLKAKDHEIASLKALKENVRQEDRQQDPPEKGPGPSERTNAGRCGPRKLVTYGKMVVTAGRLASEPRQRPEKAVAQPSEKETLETERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNVAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQRLKEERRESRLRVSDSDKAKSEAQQRIDLLEFDLNETAKACQRESLKASTFEGMYQEASTMATLLQAEVEQCRTDAKMIAQELTRMQIESEKSSALVGLTPSLALSSPVDVGRAVGGVDGKEVTTGKLGEE--QEAEIASLKKIIAQLASEKSDSGDAMKNLLEAHRREGEERERAFKEMQKKADSFAEENIGLRATIEKQEEESERQRVEEDERHDRDIKREIILSQQNLDSASLRDRLCRTVDELCGAEEAGELVLTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMSAEDGTGRVPGGSGESPGSVTHAEPECYLCGQQ--GRGATDRVACVGMAPNRALASVVMKFAFRRQLVQTLKEIGAAL 644          
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Match: A0A6H5L8F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8F2_9PHAE)

HSP 1 Score: 395 bits (1016), Expect = 1.810e-127
Identity = 273/528 (51.70%), Postives = 338/528 (64.02%), Query Frame = 0
Query:  132 RNVVAYGNMTIKASRLAAETRERLKKAAEEPSEQDRLDEGMAVAAMGASHTEQQLLRASREIRGQLERALQEAEALRADNVTSKSRANIAEKGKADLEARVAWLSDEVKLQTAPLMALRLELTQARSDTEMMRQRLKEERRESRIRVGDLEKASVDATQRIERLEFDLNEATKALQRESLKASTFEGMFREASTATKVLHEEVEQRQADAKRIAQELTRMQ----------------MEGDRPMGQFQDEEIASENLVVEKQQQAVISALKASIAKLHLEKAKSNDDAVKQLQKLRGEAEERERAFKEAKE-----------------------------RAESYAEENSRLRLAAEKQEEE---QRQRDQERHDREVQHEKETRARNLQFKSLRARLCRTLDRLSEAEEAGELAITCLECAKLFKDPLVMAPCGHTLCADCSRGGALGQPGEGGSGWVLGGGDGGGDSTARAKNTCPVCVKQEGGAGVAEESSCVGSAPSRELATLVTKFVFRRQLLESLKETGALL 611
            R ++ YG M + A RLA+E R+R +KA  +PSEQ+ L++  AVAAMGA HTEQQLLRASR++RGQLERALQEAEALRADN+  K+R N+AEK KA LE RVA LSDEVKLQ APL AL+LELTQ RSDTE MRQ LKEERRESR+RV D +KA  +A QRIE LEFDLNE  KA Q     ASTFEGM++EAST   +L  EVEQ + DAK IAQE+   +                ++  R +G  + EE+  E L   ++Q+A I++LK +IA+L  EK++S D     L+  R E EERERAFKE ++                             RA+ +AEENS LR   EKQE +   QR  + ER DR+++ E     ++L   SLR RLCRTLD L  AEEAGEL +TC  CAKLFKDP  MAPCGHTLCA C  GG  G   E GSG + GG      S   A+  C +C +Q+ GA   +  +CVG AP+R LA++V KF FRRQL+++LKE GA L
Sbjct:   43 RKLITYGKMVVTAGRLASEPRQRPEKAVAQPSEQETLEKERAVAAMGAKHTEQQLLRASRDVRGQLERALQEAEALRADNIAFKTRVNLAEKEKAHLETRVALLSDEVKLQIAPLKALQLELTQTRSDTETMRQXLKEERRESRLRVSDSDKAKSEAQQRIELLEFDLNETVKACQ-----ASTFEGMYQEASTMATLLQAEVEQCRTDAKIIAQEIESEKSSALVGLTPSVALSSSVDVGRAVGGVEGEEVTKEKL--REEQEAEIASLKKTIAQLESEKSESGDAMKSLLEAHRREGEERERAFKEMQKKCVTSGARILTSSHCLSFSQSHSIRRPARRADFFAEENSGLRAKIEKQEADSKRQRVEEDERRDRDIKREIILSQQHLDSASLRDRLCRTLDALCGAEEAGELVLTCQRCAKLFKDPHTMAPCGHTLCAGCCAGGDGGMSAEDGSGRMPGGSGESPGSVTHAEPECYLCGQQDRGA--VDRVACVGIAPNRALASVVVKFAFRRQLVQALKEIGAAL 561          
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Match: A0A6H5L7S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.250e-11
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 0
Query:    6 LRPVVPMC--LAPSENTKG-VFKHRMFTLNNFGRKTALSKEEGSGISDVARDEENFRSSLKRNIAQLSNLARVNKEELARLREQMKAK 90
            LRP VP     AP+E+ +  + KHR F  N+FGR      E G    ++A+D+E FR+ LKRNI  LSNL RVN+E+LARLREQ++ K
Sbjct:   16 LRPAVPASRPTAPTESKRTRILKHRTFAPNSFGRSKG---EGGKDDIEIAKDDEKFRNGLKRNIIHLSNLTRVNQEQLARLREQVQTK 100          
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Match: A0A225WD04_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WD04_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.250e-6
Identity = 40/122 (32.79%), Postives = 58/122 (47.54%), Query Frame = 0
Query:  484 TLDRLSEAEEAGELAITCLECAKLFKDPLVMAPCGHTLCADC-SRGGALGQPGEGGSGWVLGGGDGGGDSTARAKNTCPVCVKQEGGAGVAEESSCVGSAPSRELATLVTKFVFRRQLLESL 604
            T++ L +AE A E   TCL+C +LFK P+ +APCGHT CA C ++ G +  P                     +   C +C           E+ C+   P+  LA L  +F+FR+Q L SL
Sbjct:  728 TVNSLLDAEHASESTFTCLQCMQLFKQPMTLAPCGHTYCASCLTKCGNVDVP---------------------SSIVCKMCETS-----TKMETECI--FPNLALADLTARFIFRQQSLASL 821          
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Match: A0A2D4BKS0_PYTIN (RING-type domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKS0_PYTIN)

HSP 1 Score: 62.8 bits (151), Expect = 1.560e-6
Identity = 40/122 (32.79%), Postives = 58/122 (47.54%), Query Frame = 0
Query:  483 RTLDRLSEAEEAGELAITCLECAKLFKDPLVMAPCGHTLCADCSRGGALGQPGEGGSGWVLGGGDGGGDSTARAKNTCPVCVKQEGGAGVAEESSCVGSAPSRELATLVTKFVFRRQLLESL 604
            RT+  L EAE A E   TC++C +LF DP+ + PCGHT C+ C                     D  G+++  +   C  C K +      EE+   G   ++ LA L  +F+FR+Q L SL
Sbjct:  641 RTVGSLVEAETASEATFTCMQCMRLFVDPMTLTPCGHTYCSSCL--------------------DKLGNTSIPSTIVCKECPKDQH-----EETE--GIFTNQALADLTARFIFRQQSLSSL 735          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig89.16431.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FVA8_ECTSI6.530e-17654.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8F2_9PHAE1.810e-12751.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7S0_9PHAE4.250e-1150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A225WD04_9STRA1.250e-632.79RING-type domain-containing protein n=1 Tax=Phytop... [more]
A0A2D4BKS0_PYTIN1.560e-632.79RING-type domain-containing protein n=1 Tax=Pythiu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..100
NoneNo IPR availableCOILSCoilCoilcoord: 187..217
NoneNo IPR availableCOILSCoilCoilcoord: 400..451
NoneNo IPR availableCOILSCoilCoilcoord: 253..312
NoneNo IPR availableCOILSCoilCoilcoord: 331..351
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 498..563
e-value: 0.0032
score: 26.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 501..563
score: 9.48
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 504..526
e-value: 9.3E-6
score: 25.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 496..568
e-value: 2.2E-8
score: 35.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig89contigC-linearis_contig89:597131..602989 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig89.16431.1mRNA_C-linearis_contig89.16431.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig89 597131..602989 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig89.16431.1 ID=prot_C-linearis_contig89.16431.1|Name=mRNA_C-linearis_contig89.16431.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=615bp
MCDQELRPVVPMCLAPSENTKGVFKHRMFTLNNFGRKTALSKEEGSGISD
VARDEENFRSSLKRNIAQLSNLARVNKEELARLREQMKAKDDEILALKGE
NARVERADRQEEVREGDLVSSQKNANPKARLRNVVAYGNMTIKASRLAAE
TRERLKKAAEEPSEQDRLDEGMAVAAMGASHTEQQLLRASREIRGQLERA
LQEAEALRADNVTSKSRANIAEKGKADLEARVAWLSDEVKLQTAPLMALR
LELTQARSDTEMMRQRLKEERRESRIRVGDLEKASVDATQRIERLEFDLN
EATKALQRESLKASTFEGMFREASTATKVLHEEVEQRQADAKRIAQELTR
MQMEGDRPMGQFQDEEIASENLVVEKQQQAVISALKASIAKLHLEKAKSN
DDAVKQLQKLRGEAEERERAFKEAKERAESYAEENSRLRLAAEKQEEEQR
QRDQERHDREVQHEKETRARNLQFKSLRARLCRTLDRLSEAEEAGELAIT
CLECAKLFKDPLVMAPCGHTLCADCSRGGALGQPGEGGSGWVLGGGDGGG
DSTARAKNTCPVCVKQEGGAGVAEESSCVGSAPSRELATLVTKFVFRRQL
LESLKETGALLWQE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR027370Znf-RING_LisH
IPR013083Znf_RING/FYVE/PHD