mRNA_C-linearis_contig86.16213.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig86.16213.1
Unique NamemRNA_C-linearis_contig86.16213.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: D8LSD3_ECTSI (Cytochrome b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSD3_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 4.460e-140
Identity = 203/252 (80.56%), Postives = 220/252 (87.30%), Query Frame = 3 
Query:   30 MEKLQVRSLWAAHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGLGIVIIVTCLCATYAVMDVHKIRRGPEAD---LSAPLI 776
            MEK+QVRSLWAAHVMSWTA I+VLVWALA QD+DYFLGGL  +GT LFNWHPVLMV+G++VAYTQGILAYRTL L R  NK+ HNACMFTA +LVSLGL AVFQYHN ELYANLYTMHSW+GIVVVTLF+ANYVGGFFNFF G TPQWMKAQYLPNHVFIG+FTYFAAAFT ++GIQ+KNSA  CGYDITLTEPDYNPASHY NLYAGCRLSNGLGIV+IVTCLCATYAVM      R PE     L APL+
Sbjct:    1 MEKIQVRSLWAAHVMSWTALIMVLVWALANQDDDYFLGGLAFSGTGLFNWHPVLMVAGLVVAYTQGILAYRTLSLEREVNKMIHNACMFTAVILVSLGLIAVFQYHNKELYANLYTMHSWAGIVVVTLFYANYVGGFFNFFTGSTPQWMKAQYLPNHVFIGIFTYFAAAFTTLLGIQDKNSALGCGYDITLTEPDYNPASHYSNLYAGCRLSNGLGIVVIVTCLCATYAVMP-----RKPEQTATVLDAPLL 247
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A6V1N3X2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3X2_HETAK)

HSP 1 Score: 201 bits (510), Expect = 5.470e-56
Identity = 99/222 (44.59%), Postives = 135/222 (60.81%), Query Frame = 3 
Query:   63 AHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGLGIVIIVTCLCATYAVMDV 728
            +H +    F+LV+ WA    DN+   G  GLT + +F WHPV M  GM+  + Q  LAYR  P  +  NK+ H      A +L+SLGL++VF+YHND L ANLY+ HSW G+  V LFF N+  GF  F+    PQW +A YLP HV++GV T+F+A  T   GI EKN+   C YDI     D NPASHYW++ +GCR+S+ L I  ++  +    AVM++
Sbjct:   22 SHGLCLLIFVLVITWANMSSDNN---GLGGLTASNIFAWHPVFMTVGMVCVFAQAALAYRAYPFGKKTNKLIHMVLQAIAVILISLGLWSVFKYHNDNLIANLYSTHSWLGVATVCLFFQNFGLGFGAFWLPYAPQWARAAYLPAHVYLGVLTFFSAVLTVCTGITEKNAWLGCSYDIDSV--DTNPASHYWDIPSGCRVSSWLAICTLLLLISTGVAVMNL 238
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A7S2V225_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V225_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.280e-50
Identity = 96/235 (40.85%), Postives = 136/235 (57.87%), Query Frame = 3 
Query:   33 EKLQVRSLWAAHVMSWTAFILVLVWALAYQDNDYFLGGLG-LTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQW-MKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGLGIVIIVTCLCATYAVMDVH 731
             K Q  SL  +H++      LV+ WA    D+    GGLG L G A F+WHPV MV G+I+ +T+ +L+YR+ PL +A NKI H      A V +  GL+AVF+ HN+ LYANLY+ HSW G+  + LF   +VGG   F +   P    K  YLP H+ +G+ TY  A      G+ E ++ +SCGY ++   PD NPASH+  +  GC+ +N L I ++   LCA   V+D+H
Sbjct:   20 NKWQSYSLVLSHILVIVVACLVVGWASMSSDS----GGLGGLQGGAPFSWHPVCMVFGLIICFTEAMLSYRSFPLGKAANKIIHLTLQTVAIVFLGTGLWAVFKAHNENLYANLYSSHSWLGLTTIVLFVPQWVGGLVAFVSKSAPSAEAKKAYLPLHILVGLLTYLCAVLAVETGLSENSAFSSCGYSVST--PDKNPASHWHLVSPGCKAANALAITVVALALCALATVIDIH 248
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A7S2UVL7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVL7_9STRA)

HSP 1 Score: 179 bits (454), Expect = 6.360e-48
Identity = 97/205 (47.32%), Postives = 123/205 (60.00%), Query Frame = 3 
Query:   60 AAHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGL 674
            A H +   A I V  WA   +D    LGGL     + F WHPVLMV GM++ Y + +L+YR  PL +A NKI H      A   + +GLYAVF+ HND L ANLY++HSW GI  V LFF  +V GF  F+ G      K  YLP HV++GV T+F+A  T   GI EK +   CGY +T  EPDYNPASHY  + AGC+++N L
Sbjct:   70 AVHFLCICAAIGVYTWANMSKDLKG-LGGLYNGSASSFAWHPVLMVWGMVICYAEAMLSYRAFPLGKATNKIIHLVLQTLATFFICMGLYAVFKNHNDGLVANLYSLHSWLGIATVVLFFHQWVLGFAAFWLGAASPETKKAYLPVHVYLGVLTFFSAIITVESGITEKLAWLGCGYKVT--EPDYNPASHYDLIPAGCKVANWL 271
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A7S3MBE7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBE7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.070e-35
Identity = 80/229 (34.93%), Postives = 124/229 (54.15%), Query Frame = 3 
Query:   93 LVLVWALAYQDNDYFLGGLGLTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHN-------DELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGLGIVIIVTCLCATYAVMDVHKIRRGPEAD 758
            +V+ WA  +  +  +LGG+  +   +FN+HPV+MV GM +     +L+YR + L +   K+FH      A V   +GL AV   HN       ++  ANLY+MHS  GI  + L+F+NY+  FF+F   +     +A + PNHVF+G+FT  AA      GI E  +   C Y +T    D+NPA +Y  L  GC+L+NGLG++I++      YA++    +     +D
Sbjct:   36 MVITWADKHDTSKNYLGGINWS-KRVFNYHPVMMVIGMNLCLITSLLSYRIIELPKKITKVFHAVTHAGAIVCALVGLSAVVTSHNYKDHNGNNKYTANLYSMHSLLGISALVLYFSNYILAFFHFLMPVVSNDARASFKPNHVFLGLFTLIAATIALETGITELTTKLGCIYPVTSA--DWNPAENYHELSDGCKLANGLGVMILLGVFLCAYALLGPGTVALASRSD 261
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A5C7ING6_9ROSI (Cytochrome b561 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7ING6_9ROSI)

HSP 1 Score: 130 bits (327), Expect = 1.040e-30
Identity = 72/172 (41.86%), Postives = 101/172 (58.72%), Query Frame = 3 
Query:   60 AAHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGT---ALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEK 566
            AAHV++    I+VLVW L      YF GGL    T    +FN HPVLM+ G+I+   + I++Y++LPLT+   KI H      A +L  +G+ A F+YHN+    NLY++HSW GIV++ L+   ++ GF  FF    P  ++++ LP HVF GVF Y  A   A IG  EK
Sbjct:   13 AAHVLAIAGAIMVLVWCL------YFRGGLAWKATNKSLIFNLHPVLMLIGLIIIGGEAIISYKSLPLTKQVKKIIHMILHAIALILGIVGICAAFKYHNESSIVNLYSLHSWLGIVIICLYGIQWIYGFVIFFYPGGPTEIRSESLPWHVFFGVFVYVLAVANAAIGFLEK 178
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A059BF36_EUCGR (Cytochrome b561 domain-containing protein n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=A0A059BF36_EUCGR)

HSP 1 Score: 127 bits (319), Expect = 1.000e-29
Identity = 69/171 (40.35%), Postives = 101/171 (59.06%), Query Frame = 3 
Query:   63 AHVMSWTAFILVLVWALAYQDNDYFLGGLGLTG---TALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEK 566
            AH++      L+LVW L +QD      G+ L+    + +FN HP+LMV G+I+A  + I+ Y+T+P TR   K  H      A VL S+G+YAVF++HN+   ANLYT+HSW GI  ++LF   +V GFF+F       + +A ++P HVF+G   +  A  TA  G+ EK
Sbjct:   18 AHLLLVAVAALILVWLLKFQD------GVALSSANKSKIFNLHPLLMVFGLILAGGEAIMVYKTIPATREAQKTIHLILHLIALVLGSVGVYAVFKFHNELHIANLYTLHSWLGITTISLFGLQWVLGFFSFVFPKARSYARASFIPWHVFLGSVVFLLAICTAESGLVEK 182
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: UPI001E86C7B3 (lysosomal membrane ascorbate-dependent ferrireductase CYB561A3 isoform X1 n=3 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI001E86C7B3)

HSP 1 Score: 125 bits (315), Expect = 1.310e-28
Identity = 80/225 (35.56%), Postives = 115/225 (51.11%), Query Frame = 3 
Query:  126 NDYFLGGLGLTGTA-LFNWHPVLMVSGMIVAYTQGILAYRTLPLT----RAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPASHYWNLYAGCRLSNGLGIVIIVTCLCATYAV-MDVHKIRRGPEADLSAPLIQE 782
            + ++LGG    G++ +FNWHPV MV+GM+V Y    L YR  PL+    +   K+ H     TA +LV LGL AVF++HN +   N+Y++HSW G+  V LF   ++ GF +F     P W++A Y P HVF G           + GI EK           LT    N  + Y NL A    +N LG++I++  L   +A+ M   K       D+  PL+QE
Sbjct:   62 SQHWLGGFAWDGSSEMFNWHPVFMVTGMLVLYGSAALVYRV-PLSWEGPKLPWKLLHAGLTLTAFLLVILGLVAVFEFHNKKKIPNMYSLHSWLGLTAVVLFSCQWLMGFASFLLPWAPIWLRALYKPIHVFFGSAILSVVMAACISGINEK-------LFFRLT----NSTTPYSNLPAEAWFANILGLLILIYGLLVLWALAMSAWKRPDANSQDIQEPLLQE 274
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A2G9HLG4_9LAMI (Cytochrome b n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HLG4_9LAMI)

HSP 1 Score: 123 bits (308), Expect = 3.720e-28
Identity = 66/171 (38.60%), Postives = 100/171 (58.48%), Query Frame = 3 
Query:   63 AHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGT---ALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEK 566
            AH ++    ILVL+W + ++      GGL    T    +FN HPVLM+ G+I+   + I++Y++LPL + E K+ H      A VL  +G+Y  F+YHN+   ANLY++HSW GI V++L+   ++ GF  FF    P  ++++ LP HV  G+F Y  A  TA +G  EK
Sbjct:   14 AHFLAVVGAILVLIWCIVFR------GGLAWEDTNKNLIFNIHPVLMLIGLIIIGGEAIMSYKSLPLKKPEKKLIHLVLHAIALVLGIIGIYTAFKYHNESNIANLYSLHSWLGIGVISLYGLQWIYGFLVFFFPGGPTTLRSESLPWHVLFGMFVYILALGTASLGYLEK 178
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BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Match: A0A068UAA6_COFCA (Cytochrome b561 domain-containing protein n=4 Tax=Coffea TaxID=13442 RepID=A0A068UAA6_COFCA)

HSP 1 Score: 122 bits (306), Expect = 5.640e-28
Identity = 67/168 (39.88%), Postives = 93/168 (55.36%), Query Frame = 3 
Query:   63 AHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGTALFNWHPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLYAVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMKAQYLPNHVFIGVFTYFAAAFTAVIGIQEK 566
            AH++    FILVLVW L +++   F     L    LFN HP+ MV G ++   Q I+ Y+T P TR   K+ H    F A V   +GLYAVFQYH+D    ++YT+HSW GI   +LFF  ++ GFF F+        +A   P HV +G+  +  A  +AV G+ EK
Sbjct:   19 AHLVFIAIFILVLVWLLKFREGLSFQSDNKLK---LFNLHPLFMVIGFVLISGQAIMTYKTFPATRKRQKLVHMTLNFIALVAAIVGLYAVFQYHHDLGIPHVYTLHSWFGISTASLFFLQWLFGFFAFWVRARDSTTRANLAPWHVLLGMVIFSMAILSAVTGLIEK 183
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD3_ECTSI4.460e-14080.56Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A6V1N3X2_HETAK5.470e-5644.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V225_9STRA5.280e-5040.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2UVL7_9STRA6.360e-4847.32Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3MBE7_9STRA1.070e-3534.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A5C7ING6_9ROSI1.040e-3041.86Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A059BF36_EUCGR1.000e-2940.35Cytochrome b561 domain-containing protein n=2 Tax=... [more]
UPI001E86C7B31.310e-2835.56lysosomal membrane ascorbate-dependent ferrireduct... [more]
A0A2G9HLG4_9LAMI3.720e-2838.60Cytochrome b n=1 Tax=Handroanthus impetiginosus Ta... [more]
A0A068UAA6_COFCA5.640e-2839.88Cytochrome b561 domain-containing protein n=4 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:227769..232702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.9
Seed ortholog evalue8.7e-115
Seed eggNOG ortholog2880.D8LSD3
Preferred nameCYBRD1
KEGG rclassRC00467
KEGG koko:K01183,ko:K08360,ko:K08370,ko:K10706,ko:K16295,ko:K18749
KEGG TC5.B.2.1
KEGG ReactionR01206,R02334
KEGG Pathwayko00520,ko01100,ko04978,map00520,map01100,map04978
Hectar predicted targeting categorysignal peptide
GOsGO:0000293,GO:0000323,GO:0001505,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005903,GO:0006091,GO:0006873,GO:0006875,GO:0006879,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010008,GO:0010035,GO:0010038,GO:0010039,GO:0010646,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016491,GO:0016722,GO:0016723,GO:0019725,GO:0019904,GO:0022900,GO:0023051,GO:0030003,GO:0030133,GO:0030658,GO:0030659,GO:0031090,GO:0031224,GO:0031253,GO:0031410,GO:0031526,GO:0031902,GO:0031982,GO:0032501,GO:0032879,GO:0042221,GO:0042592,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0046916,GO:0046928,GO:0048167,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050877,GO:0050890,GO:0050896,GO:0051046,GO:0051049,GO:0051588,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060341,GO:0065007,GO:0065008,GO:0071944,GO:0097708,GO:0098588,GO:0098590,GO:0098771,GO:0098805,GO:0098852,GO:0098862,GO:0099177,GO:0120025,GO:0120038,GO:1903530
EggNOG free text desc.oxidation-reduction process
EggNOG OGsKOG1619@1,KOG1619@2759
Ec32 ortholog descriptionCytochrome b561/ferric reductase transmembrane
Ec32 orthologEc-21_003260.1
EC1.16.5.1,3.2.1.14
COG Functional cat.U
CAZyGH18
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03019,ko03021
Exons6
Model size2009
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16213.1prot_C-linearis_contig86.16213.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig86 227798..231481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930656.5771058-UTR-C-linearis_contig86:227768..2277971622930656.5771058-UTR-C-linearis_contig86:227768..227797Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 227769..227797 +
1690881181.0416791-UTR-C-linearis_contig86:227768..2277971690881181.0416791-UTR-C-linearis_contig86:227768..227797Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 227769..227797 +
1622930656.709903-UTR-C-linearis_contig86:231481..2327021622930656.709903-UTR-C-linearis_contig86:231481..232702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 231482..232702 +
1690881181.111352-UTR-C-linearis_contig86:231481..2327021690881181.111352-UTR-C-linearis_contig86:231481..232702Chordaria linearis ClinC8C monoicousUTRC-linearis_contig86 231482..232702 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930656.5939825-CDS-C-linearis_contig86:227797..2278901622930656.5939825-CDS-C-linearis_contig86:227797..227890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 227798..227890 +
1690881181.0587926-CDS-C-linearis_contig86:227797..2278901690881181.0587926-CDS-C-linearis_contig86:227797..227890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 227798..227890 +
1622930656.6145034-CDS-C-linearis_contig86:228478..2285811622930656.6145034-CDS-C-linearis_contig86:228478..228581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 228479..228581 +
1690881181.0683885-CDS-C-linearis_contig86:228478..2285811690881181.0683885-CDS-C-linearis_contig86:228478..228581Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 228479..228581 +
1622930656.6334085-CDS-C-linearis_contig86:228978..2290941622930656.6334085-CDS-C-linearis_contig86:228978..229094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 228979..229094 +
1690881181.0790644-CDS-C-linearis_contig86:228978..2290941690881181.0790644-CDS-C-linearis_contig86:228978..229094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 228979..229094 +
1622930656.6506894-CDS-C-linearis_contig86:229483..2296151622930656.6506894-CDS-C-linearis_contig86:229483..229615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 229484..229615 +
1690881181.0872486-CDS-C-linearis_contig86:229483..2296151690881181.0872486-CDS-C-linearis_contig86:229483..229615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 229484..229615 +
1622930656.6710036-CDS-C-linearis_contig86:230027..2302291622930656.6710036-CDS-C-linearis_contig86:230027..230229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 230028..230229 +
1690881181.095497-CDS-C-linearis_contig86:230027..2302291690881181.095497-CDS-C-linearis_contig86:230027..230229Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 230028..230229 +
1622930656.688091-CDS-C-linearis_contig86:231368..2314811622930656.688091-CDS-C-linearis_contig86:231368..231481Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 231369..231481 +
1690881181.1035738-CDS-C-linearis_contig86:231368..2314811690881181.1035738-CDS-C-linearis_contig86:231368..231481Chordaria linearis ClinC8C monoicousCDSC-linearis_contig86 231369..231481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig86.16213.1

>prot_C-linearis_contig86.16213.1 ID=prot_C-linearis_contig86.16213.1|Name=mRNA_C-linearis_contig86.16213.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=253bp
MEKLQVRSLWAAHVMSWTAFILVLVWALAYQDNDYFLGGLGLTGTALFNW
HPVLMVSGMIVAYTQGILAYRTLPLTRAENKIFHNACMFTAAVLVSLGLY
AVFQYHNDELYANLYTMHSWSGIVVVTLFFANYVGGFFNFFAGLTPQWMK
AQYLPNHVFIGVFTYFAAAFTAVIGIQEKNSANSCGYDITLTEPDYNPAS
HYWNLYAGCRLSNGLGIVIIVTCLCATYAVMDVHKIRRGPEADLSAPLIQ
ES*
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mRNA from alignment at C-linearis_contig86:227769..232702+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig86.16213.1 ID=mRNA_C-linearis_contig86.16213.1|Name=mRNA_C-linearis_contig86.16213.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4934bp|location=Sequence derived from alignment at C-linearis_contig86:227769..232702+ (Chordaria linearis ClinC8C monoicous)
CTCTTGCTTTGCTCTTCCCTAGGGTGGACATGGAAAAGCTTCAAGTTCGC
AGCCTATGGGCTGCTCATGTGATGTCCTGGACGGCTTTCATTTTAGTTTT
GGTGTGGGCTCTGGCTTATCAGGTATGCATAAATTACCTACTTGCGTCTG
ACATTGCGTGACAGAGAAAATCTCGCCGCACCTAAAACGTAAAGTATAAT
GTTGTACGCTGTCCTTGGCACTTGGGGGTTGAGTTGCGGCATAGATGCCA
GCGCATGGATGTACGAATAACTTCAATGTTTTCTCTCTCTCGCTCTCTCG
CTCCTTCTTCCCTTAGCTCGGTGTAGATTTCTCCCACTGCTGTTGTTCAA
TGCGAAGGATCGGGACATGTGTGTGTTTCTGAAAACATGATGCGTGCCTT
GGTGTCATCACGAACTAACCTCCGACAAATCAGTGACGTGTGACAGCTTG
CTGATTTTGTGGTGCCAGCAGCCAGGGGCGATGTGAGCGAGGGTTATAGT
GTCTACAGCAGCAGCAGTCCCCCTGGAATGACTTTTTCACAGGTTGAAAG
TAGAAGGCTAACGATTTGTATGCACAACATTTTTTAACCTTTTTTAAACA
GCAGCAGCCGCGGTACACGGATCGCACCAGTAAGGATGATGCATGCATGT
GTGCCAAGCCCCGCCCCCTCTCCCTCTCCCAATGTTGCGGCGTTCGAACG
CACCCGTCAGGATAACGACTACTTCCTGGGGGGACTGGGCTTAACTGGAA
CGGCACTATTCAATTGGCACCCGGTTCTGATGGTGTCGGGGATGATCGTC
GCGTACACCCAGGGTGAGAGAAACACCTCCGTTTTATTTGCACGGATAAG
ACACATACGAGGACATTGGGGGGGCGAGGTTTAAATCGTCCGTCAACAAA
AGCAATTTGAATGATATCTTGCTTGCTGGGTAGTTGCTAAGTCGCGTACG
AACTGGGATATTTATTGCAATGCGTTCAACAGATTGGAGCGGCACATGAC
AAGCAATAAATGTTCAAGTAGGATACAGGAAGAACGGAAGAACAAATATC
TTTGTTCGTGTGTGGCGCCTGAGGCGAGGCAAACCTCTGTCGTGTAGGAT
TTAGCAAGGCACCAACGGCTGCCCGCGTGCGCTCACCCTGTTTAAATATC
TCTGTCCAATCCCTCCCTCTCTCCGTCGCTCTCTACCCCCCGCCTCCCTC
CTGGTGAAAGGTATCTTGGCGTATCGAACGCTACCGCTTACAAGAGCGGA
GAACAAGATTTTCCACAACGCGTGCATGTTCACCGCGGCGGTCCTCGTGT
CGCTTGGTCTGTACGCCGTCTTTCAGGTCTGAACTCGTCGGACGAGATGG
CAGTGCGTGCATGCGCAGAACGCGCAGTGCGCAGACCCTTGTGTCTGTTT
CTGAGTGAGAGCTTGGAAACGCGCATGCTTTACAGTAGTAGTGCTGAAGC
CATGACAGTCTACCTCTGTCGTAATTTGTTGGGTACTGCTGTTGTCAACA
ACTTTCGACTTGGGAACGAAAAGGCCGGTGTTGTTGTCGCGATTTATACC
ACCCCGCCGCTGCCCCCCCCCTGCCCTCCGCCATGCGTGTAAACAGAGCG
TTTCATGCATGCCCCCTCCCGCCCCCCCCCCGCTCGTAACCGCTGCATCC
CACGTAAAACCGTTCTGAACCCCCGTATCTCCCTCCCCCCCCACTTCCCA
CCCTCCTTTGTTCAGTACCACAACGACGAGCTGTACGCCAATCTTTACAC
GATGCACAGCTGGTCGGGGATCGTGGTGGTGACGTTGTTTTTCGCCAACT
ACGTTGGTGGCTTTTTCAACTTCTTCGCGGGGTTGACGCCGCAGTGGGTG
AGAGGGGGAAGTCGTTGTTCTGGTTGTTTTGCCGTCTCGGAGCCTTTGTG
CTGTGAATTGTCCCTCATCATCCCTTGTGTGTGGCAGACCCAGATTTCAA
GCGTTTCGTTTTCTTTTTTGTGCCTTTTGGAATTCCTCCTAAACGATCTA
CGTTGAAATATGAAATGTGTTCTCTGTGCGCCCTCCTGTAGTTGGCTCTT
AAGAACCACCCGTCGCACGGCGTATCTAGGCGCCTCCACCCGCCCAGCCC
AGCCACCCATTCTCGTGAGCACGCGCGCTGCCTCATCCGCTGTTCCCCTA
CCCACCCTGCACGTCAGATACACAGCAGTACCGCGTTATCGCGATTGCCT
ACCTATTTCCTGGGCGCCCTTTCTAACACACGGTTGTATGCTGTGCCTAT
AACCTGCAGATGAAGGCGCAGTACCTGCCCAACCACGTGTTCATCGGGGT
ATTCACCTACTTCGCCGCGGCCTTCACGGCCGTGATCGGCATCCAAGAGA
AAAACTCGGCCAACTCTTGCGGCTACGACATTACGCTCACGGAGCCGGAC
TATAACCCGGCCTCCCACTATTGGAACTTGTACGCGGGCTGCCGCCTCAG
CAACGGGCTGGGTGAGTTGTTTGTTTCCCGCCGCAACCGCACCCACGCAC
GCACGGCGGTGTGTGTGTGTGTGTGTGTGTGTTTTCTTATTTAGCATCGC
CCACGCTAACCGGTTGACGATGGAAAAGACTGTCAGCCTTAGCGTGGGAA
AAAACGTGAAGGCTTTCCATCGTGTTGGAACCCTCAAGAGGGCTCGTGGA
TTGCAGTACCCGCACCTATGCCCCCCCCCCCCTCGTCCACATTTTTTTGC
GGGCTTAATCCTGGAAACATGAACAACACATATACTGGAAACAGTTTACA
AAATGCTTTGTCGGGCTCTCTGCAAGCTGTTTGCTAGCATTTTCTGCTCG
CCCTGCCCACATATCATATGCATAGGCGTGTGCGTCGCAAGTCTGCCAGG
GTCGCCCAGAGTTGCTGCACATAGAATATATAGGGGGGTATGGAATCTGC
GGGACTCCCCAAGAGAACGCTATGGTGGGTTTTAGTATAGGGACATCGCC
CCCCCCTCCTCCGATTTCGGCTCAAACCAGTTTGACGGCATAGGTGTGGG
GTATTGCAATCCACGTGCCCTCTTGGAACCCTTCGATAGGGGTTCCGCGA
AAGATACCCGATCAAAGGGCAGAGGTGTGGGTTCTCACAAGGCAACCTGT
ACGCATTCCCAAAGAGTTTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
GTGTCTTTTATGCAGCCTTGGTCGTCGTGTGCCCACCCAGCATAACCAGC
CTTTTGCGGTGCCTTGTAGGTGTGCACTGCTGTCTCCAGAGGCTGCAAGA
GCAAGAGCTACTGGTACCTTTTTGGCGGCAAAGAAAGAAGAACGAAGTGT
TTTAAAAGGGTCGCCATTCGCCATGCCGCCGTGTGTTACGGTTCTGCCCA
TTACTGGTAGACATCCGACCCGGTCACTTGCGTATGTAGTGCCCCTGCGT
GAGCAATCGGCGGCGGCTTGAGTGGTCGACTCGACACCGACGCGCCAACG
AGAAACGGCTTCCTCGCCTGTCTCCTCGACTCGCCGAACCCTAGCCTTCC
TTGCGCCAACTCCTTTTTTCTGTGGGAAATGGTACTGCGGCTGTTGTGCC
ACGCCTGATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCAG
GCATTGTGATCATCGTGACATGCCTCTGCGCCACGTACGCCGTCATGGAC
GTGCACAAGATCAGGCGGGGGCCGGAAGCGGATCTCAGCGCCCCGCTCAT
CCAAGAGAGTTGATTTTGGCGATTTAAAGCAGCGCCTGCTATACTATGTC
CGCGCGCGCTGCTGCGTTGCTGAAACGTGTAGCGCCGTCATCGAGTTTCA
GCTCGCGAAGAAAGCGCCCGGGTCGTTATGTTTTATGTGTGTTAGATTAT
CCCGCCGACCCATGAGTCTGCGTGTACTCTCCCTGTGGTAAAGCGTGGAA
CTTGTTCAGAGGAGGGCGATACCGGCGTGCCCCGCTGCGGTGGTGTGAGG
TCAAACAGCGGGCAGCCGGGGCAAAGTCTAAACCTACTTGCTATATATAT
ACTTCGTGTACTTTTTTTTCGGGGTGTTGGATGGAAGAGGAGAACCTTGC
AAACCGGCCCGACACCGCATGGACTGACTCGTCGTGTCCCGCGCTGTTAG
GTTCACGTCATACGGCGTGGCGTACAGGTACCGCCCTTCCCTGTTTTGTG
CTGCAGCGCCACTCTCGCTGGCGGCCTTTCTTCAATCGTTGCCGGATCCG
TAAGCTCTTGCGCAGTTCGTTTTCGGTTGTCGGGTGAACGCGCTGGCTGC
TCGCTGAAGCGCTTTCTGCGATAAAAAGAACGTGCGTGGTGTGTGTAACT
TTTATGTAGTTTTGATTTTCGGTATTGTGTGCCGTTCGTTCTTTCACACC
TTCAAGAATAGTTCACGTTTGTTATACGAAGTATGTATGTACTGGTATGT
GTGTACATCGATGTTGCTCTCTTCCGATACCTTTGTTTTTTGTTTGTTCG
GAGTGATGTGAAAACTTTAATGCTTGCTTTCAGCACGGTATCTGGGGGAA
AAGGGGCAGACGGGCATGACCGTCAAAGTCGGCGAATCGCTTTTGTGTTT
GTTTTACTCAGCGGAGTGGCATGACGCGCGACGGGAGCGACGAGAGGCGA
AAGCGGTTTGACGTTTTGACCATACAGTAGTACCTTGTTCGAGCGGCCGA
GATGAGCATGACCCAGCAATCAGCGCAATCTGTGGCATTTTTGTCGAGGT
TAGCTTTGGGATTCCATGAGGGGGGCGGGGGCGCGCTCACGAGGTCTAGT
TTCGGCTCTCCTTGCTGTTTTCGTATGTATGCCATTTCTTTTTTGCAGAT
GGCGGCTACAGCTGTAGCCACACAGAGGGGCACCGGCTAGAATATCAGAT
GCACAACACCGAATCTTGTGCGGGGCGGGACGGCCGCCGAAGGGCCCGTC
GGCAAAAATTGATCAAAAGCCAAAGGAGGACCGG
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Coding sequence (CDS) from alignment at C-linearis_contig86:227769..232702+

>mRNA_C-linearis_contig86.16213.1 ID=mRNA_C-linearis_contig86.16213.1|Name=mRNA_C-linearis_contig86.16213.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at C-linearis_contig86:227769..232702+ (Chordaria linearis ClinC8C monoicous)
ATGGAAAAGCTTCAAGTTCGCAGCCTATGGGCTGCTCATGTGATGTCCTG
GACGGCTTTCATTTTAGTTTTGGTGTGGGCTCTGGCTTATCAGATGGAAA
AGCTTCAAGTTCGCAGCCTATGGGCTGCTCATGTGATGTCCTGGACGGCT
TTCATTTTAGTTTTGGTGTGGGCTCTGGCTTATCAGGATAACGACTACTT
CCTGGGGGGACTGGGCTTAACTGGAACGGCACTATTCAATTGGCACCCGG
TTCTGATGGTGTCGGGGATGATCGTCGCGTACACCCAGGGATAACGACTA
CTTCCTGGGGGGACTGGGCTTAACTGGAACGGCACTATTCAATTGGCACC
CGGTTCTGATGGTGTCGGGGATGATCGTCGCGTACACCCAGGGTATCTTG
GCGTATCGAACGCTACCGCTTACAAGAGCGGAGAACAAGATTTTCCACAA
CGCGTGCATGTTCACCGCGGCGGTCCTCGTGTCGCTTGGTCTGTACGCCG
TCTTTCAGGTATCTTGGCGTATCGAACGCTACCGCTTACAAGAGCGGAGA
ACAAGATTTTCCACAACGCGTGCATGTTCACCGCGGCGGTCCTCGTGTCG
CTTGGTCTGTACGCCGTCTTTCAGTACCACAACGACGAGCTGTACGCCAA
TCTTTACACGATGCACAGCTGGTCGGGGATCGTGGTGGTGACGTTGTTTT
TCGCCAACTACGTTGGTGGCTTTTTCAACTTCTTCGCGGGGTTGACGCCG
CAGTGGTACCACAACGACGAGCTGTACGCCAATCTTTACACGATGCACAG
CTGGTCGGGGATCGTGGTGGTGACGTTGTTTTTCGCCAACTACGTTGGTG
GCTTTTTCAACTTCTTCGCGGGGTTGACGCCGCAGTGGATGAAGGCGCAG
TACCTGCCCAACCACGTGTTCATCGGGGTATTCACCTACTTCGCCGCGGC
CTTCACGGCCGTGATCGGCATCCAAGAGAAAAACTCGGCCAACTCTTGCG
GCTACGACATTACGCTCACGGAGCCGGACTATAACCCGGCCTCCCACTAT
TGGAACTTGTACGCGGGCTGCCGCCTCAGCAACGGGCTGGATGAAGGCGC
AGTACCTGCCCAACCACGTGTTCATCGGGGTATTCACCTACTTCGCCGCG
GCCTTCACGGCCGTGATCGGCATCCAAGAGAAAAACTCGGCCAACTCTTG
CGGCTACGACATTACGCTCACGGAGCCGGACTATAACCCGGCCTCCCACT
ATTGGAACTTGTACGCGGGCTGCCGCCTCAGCAACGGGCTGGGCATTGTG
ATCATCGTGACATGCCTCTGCGCCACGTACGCCGTCATGGACGTGCACAA
GATCAGGCGGGGGCCGGAAGCGGATCTCAGCGCCCCGCTCATCCAAGAGA
GTTGAGCATTGTGATCATCGTGACATGCCTCTGCGCCACGTACGCCGTCA
TGGACGTGCACAAGATCAGGCGGGGGCCGGAAGCGGATCTCAGCGCCCCG
CTCATCCAAGAGAGTTGA
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