mRNA_C-linearis_contig84.16116.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A6H5JNY5_9PHAE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY5_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.770e-42 Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
MKVKVLFFASCREMAGTKETSLELPGD SS+A+LRE IV KLPGL+PVAATVTLALNQEYLDPEQDAPLK+GDEVAFIPPISGG
Sbjct: 1 MKVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVKKLPGLQPVAATVTLALNQEYLDPEQDAPLKEGDEVAFIPPISGG 84
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: D8LMR2_ECTSI (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR2_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.920e-39 Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 2
Query: 77 KVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
+VKVLFFASCREMAGTKETSLELPGD SS+A+LRE IV KLPGL+PVAATVTLALNQEYLDPEQDA LK+GDEVAFIPPISGG
Sbjct: 24 QVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVEKLPGLQPVAATVTLALNQEYLDPEQDATLKEGDEVAFIPPISGG 106
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A835YXW6_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW6_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.120e-25 Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
MKVKVLFFASCRE+AGTKE ++ L G +S LR+++V LP LEPVA +TLA+N EY DP Q+ LKDGDEVA IPPISGG
Sbjct: 1 MKVKVLFFASCRELAGTKEIAVTLEGAENSTEALRKKLVELLPALEPVAWGITLAVNHEYTDPGQNVQLKDGDEVALIPPISGG 84
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A150H0I6_GONPE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0I6_GONPE) HSP 1 Score: 85.9 bits (211), Expect = 7.270e-17 Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
M++KVL+FA RE+AG E + LP D + A L + I+ P LE V T ALNQEYL PE LKDGDEVA IPP+SGG
Sbjct: 1 MQIKVLYFAKSREVAGIAEQAFNLP-DGADTADLLQHIISSHPALESVMKTCVFALNQEYLRPEDKEALKDGDEVAVIPPLSGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: MOC2A_CHLRE (Molybdopterin synthase sulfur carrier subunit n=3 Tax=Chlamydomonas TaxID=3052 RepID=MOC2A_CHLRE) HSP 1 Score: 84.0 bits (206), Expect = 3.450e-16 Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
M++KVL+FA RE+AG E + EL GD + L QI+ P L+ V T ALNQEY+ P+ LKDGDEVA IPP+SGG
Sbjct: 1 MQIKVLYFAKSREVAGVNEQTFEL-GDGAHTEDLLAQIIAAHPALDSVMKTCVFALNQEYVRPQDKEALKDGDEVAIIPPLSGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A2P6TZ70_CHLSO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TZ70_CHLSO) HSP 1 Score: 84.0 bits (206), Expect = 3.450e-16 Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLEL-PGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
M V+VLFFA RE+AGT E S+ L PG ++V L +Q++ K P L+ + + +LNQEYL P ++ PLK GDEVA IPPISGG
Sbjct: 1 MDVRVLFFARSRELAGTSEASVTLEPGSTTTV--LLQQLLQKYPQLQELQGSFVFSLNQEYLAPGEEQPLKGGDEVAVIPPISGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: I0Z8E1_COCSC (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8E1_COCSC) HSP 1 Score: 83.6 bits (205), Expect = 4.720e-16 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
MK+ LFFA RE+AGT +EL D +S + ++ K PGL + LALNQEY+D + PLKDGDEVA IPPISGG
Sbjct: 1 MKISFLFFARSRELAGTDTYDVEL-ADGASTQDALQAVLKKFPGLSEIEGRCVLALNQEYVDSDSVKPLKDGDEVALIPPISGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A7J7QQ03_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQ03_9CHLO) HSP 1 Score: 83.2 bits (204), Expect = 6.440e-16 Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
MKV VL+FA RE+ G + LE+ D S+ KL EQ++ PGL+ V A+NQEY+ P Q LKDGDE+A IPP+SGG
Sbjct: 1 MKVNVLYFAISREVVGKSQEELEVE-DGSTTHKLLEQLLASYPGLQSVMKACVFAVNQEYVPPSQALTLKDGDEIAIIPPLSGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: L8H968_ACACA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H968_ACACA) HSP 1 Score: 81.6 bits (200), Expect = 2.240e-15 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
M+VK LFFA+ R++ G +E L D + L ++ + PGL P+ + LA+NQEY+DPE LKDGDE+A IPPISGG
Sbjct: 1 MRVKCLFFAASRDVTGVQEKELTY-ADGTKTDALIANLIEQFPGLGPIFQSAVLAVNQEYIDPESPIELKDGDEIAVIPPISGG 83
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Match: A0A8J9WLI6_9CHLO (Probable molybdopterin synthase sulfur carrier subunit n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WLI6_9CHLO) HSP 1 Score: 81.3 bits (199), Expect = 3.060e-15 Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query: 74 MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAATVTLALNQEYLDPEQDAPLKDGDEVAFIPPISGG 325
MKV LFFA RE+AGT+ L++ D +S+ + ++ + PGL+ + LALNQEY+D PL+DGDEVA IPPISGG
Sbjct: 1 MKVAFLFFARSRELAGTQSWELKVH-DGASIQDALQAVLTQFPGLKEIEGRCVLALNQEYVDKGSKQPLRDGDEVALIPPISGG 83 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16116.1 >prot_C-linearis_contig84.16116.1 ID=prot_C-linearis_contig84.16116.1|Name=mRNA_C-linearis_contig84.16116.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=85bp MKVKVLFFASCREMAGTKETSLELPGDRSSVAKLREQIVVKLPGLEPVAAback to top mRNA from alignment at C-linearis_contig84:561541..564328+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16116.1 ID=mRNA_C-linearis_contig84.16116.1|Name=mRNA_C-linearis_contig84.16116.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2788bp|location=Sequence derived from alignment at C-linearis_contig84:561541..564328+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:561541..564328+ >mRNA_C-linearis_contig84.16116.1 ID=mRNA_C-linearis_contig84.16116.1|Name=mRNA_C-linearis_contig84.16116.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at C-linearis_contig84:561541..564328+ (Chordaria linearis ClinC8C monoicous)back to top |