mRNA_C-linearis_contig83.16080.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16080.1
Unique NamemRNA_C-linearis_contig83.16080.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: D7G5G8_ECTSI (SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G8_ECTSI)

HSP 1 Score: 395 bits (1016), Expect = 2.180e-130
Identity = 197/204 (96.57%), Postives = 202/204 (99.02%), Query Frame = 1 
Query:   94 MAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLFSKEE 705
            MAETK  DASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNR+AYAFLVGTKYD+YT+MPAEEQRD+DKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNL+EISGAGEPLLLFSKEE
Sbjct:    1 MAETKAHDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRSAYAFLVGTKYDLYTSMPAEEQRDIDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLDEISGAGEPLLLFSKEE 204
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A835YI98_9STRA (SPG1, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI98_9STRA)

HSP 1 Score: 360 bits (923), Expect = 1.750e-116
Identity = 176/201 (87.56%), Postives = 189/201 (94.03%), Query Frame = 1 
Query:   94 MAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLFS 696
            M+E K  ++ R+NVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVA FFMFDLSRKSTLNS+KEWYRQVRGLNRNA+AFLVGTKYDI+ T+P EEQ+D+DK ARKFA AMHAPLIFTSASHSINVQKMFKVVLS+VFDLRCNLE+I   GEPLLLF+
Sbjct:    1 MSEAKTGESGRSNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVATFFMFDLSRKSTLNSIKEWYRQVRGLNRNAHAFLVGTKYDIFATLPTEEQQDIDKMARKFAAAMHAPLIFTSASHSINVQKMFKVVLSKVFDLRCNLEQIENVGEPLLLFT 201
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A6V1K250_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K250_HETAK)

HSP 1 Score: 336 bits (861), Expect = 8.490e-108
Identity = 162/197 (82.23%), Postives = 179/197 (90.86%), Query Frame = 1 
Query:  106 KGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLFS 696
            + K   RNNV+VKVGMVGDAQVGKTTLMVKY ENKFDEEYIMTLGVNFMEK ITLRNTE+TFSIWDLGGQREFLSMLPLVCNDA+AIFF+FDLSRKSTL S+KEWYRQ RGLNRNA+AFLVGTKYDI+TT+  EEQ ++DKQARKFAKAM APL+FTS+ HSINVQKMFK+VLSRVF+LRC L+ I   GEPLLLF+
Sbjct:    3 ENKSEERNNVIVKVGMVGDAQVGKTTLMVKYCENKFDEEYIMTLGVNFMEKIITLRNTEVTFSIWDLGGQREFLSMLPLVCNDAMAIFFLFDLSRKSTLTSIKEWYRQARGLNRNAHAFLVGTKYDIFTTLSPEEQAEIDKQARKFAKAMKAPLVFTSSPHSINVQKMFKLVLSRVFELRCTLQPIKNVGEPLLLFT 199
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A7S2UXX0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXX0_9STRA)

HSP 1 Score: 329 bits (843), Expect = 4.520e-105
Identity = 162/199 (81.41%), Postives = 179/199 (89.95%), Query Frame = 1 
Query:   94 MAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLL 690
            MAE+K  D SRNNV+VKVGMVGDAQVGKT+LMVKYVENKFDEEYIMTLGVNFMEK+ITLRNTEITFSIWDLGGQREFLSMLPLVCNDA  I FMFDLSRKSTL S+KEWYRQVR LNRNA+  LVGTKYDI+TT+P EEQ+D+DKQARKFA+AM APLIFTS+ HSIN+QKMFK++L+RVFDLR  +  I G GEPL L
Sbjct:    1 MAESKD-DNSRNNVIVKVGMVGDAQVGKTSLMVKYVENKFDEEYIMTLGVNFMEKSITLRNTEITFSIWDLGGQREFLSMLPLVCNDANTIMFMFDLSRKSTLTSIKEWYRQVRALNRNAHTLLVGTKYDIFTTLPPEEQQDIDKQARKFARAMKAPLIFTSSQHSINIQKMFKLILARVFDLRLTIPAIEGIGEPLFL 198
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A7S2CL26_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CL26_9STRA)

HSP 1 Score: 314 bits (805), Expect = 4.470e-99
Identity = 151/190 (79.47%), Postives = 170/190 (89.47%), Query Frame = 1 
Query:  124 RNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF 693
            R+NVV+K GMVGD QVGKTTLMVKYVEN+ DE+YI TLGVNFMEK+I LRNTE+TFSIWDLGGQREFLSMLPLVCNDA AIFFMFDLSRKSTL SVKEWYRQ RGLNR A AFLVGTKYD++TT+  E Q DV KQARKFAKAM APL+FTSA+HS+NVQK+FKVVL++VFDL+C L++I   GEPLL+F
Sbjct:   36 RDNVVIKCGMVGDMQVGKTTLMVKYVENRLDEDYIQTLGVNFMEKSIMLRNTEVTFSIWDLGGQREFLSMLPLVCNDASAIFFMFDLSRKSTLTSVKEWYRQARGLNRPAVAFLVGTKYDVFTTLSVEHQEDVTKQARKFAKAMKAPLVFTSATHSVNVQKLFKVVLAKVFDLKCTLDKIEEVGEPLLIF 225
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: F0YJU8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJU8_AURAN)

HSP 1 Score: 313 bits (801), Expect = 6.400e-99
Identity = 149/192 (77.60%), Postives = 171/192 (89.06%), Query Frame = 1 
Query:  118 ASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF 693
            A + NV+VKVGMVGD+QVGKTT+MVKYVEN+ D+EYI TLGVNFMEK+ITLRNTEITFSIWDLGG REFLSMLPLVCNDA A+ FMFDLSRKSTL S+KEWYRQVRGLNR+A+A LVGTKYD++ T+P EEQ ++D+ ARKFAKAM AP IFTSA  SINVQKMFKV+LSRVFDL+C LE++   GEPLL+F
Sbjct:    5 AEKPNVMVKVGMVGDSQVGKTTMMVKYVENRLDDEYIQTLGVNFMEKSITLRNTEITFSIWDLGGHREFLSMLPLVCNDAAAVLFMFDLSRKSTLTSIKEWYRQVRGLNRSAFALLVGTKYDVFVTLPPEEQAEIDRNARKFAKAMKAPCIFTSAHESINVQKMFKVILSRVFDLKCTLEKLVEVGEPLLIF 196
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A6U3ZUB0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3ZUB0_9STRA)

HSP 1 Score: 311 bits (797), Expect = 3.430e-98
Identity = 152/195 (77.95%), Postives = 171/195 (87.69%), Query Frame = 1 
Query:  115 DASRNN--VVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF 693
            + SR N  VV+K GMVGD QVGKTTLMVKYVEN+ DE+YI TLGVNFMEK+I LR+TEITFSIWDLGGQREFLSMLPLVCN+A AIFFMFDLSRKSTL S+KEW+RQ RGLNR A +FLVGTKYD++  MP E Q D+DKQARKFAKAM APL+FTSA+HSINVQK+FKVVL+RVFDLRC LE I G G+PLL+F
Sbjct:   11 ERSRENDSVVLKCGMVGDMQVGKTTLMVKYVENRLDEDYIQTLGVNFMEKSIMLRDTEITFSIWDLGGQREFLSMLPLVCNEASAIFFMFDLSRKSTLISIKEWFRQARGLNRQAVSFLVGTKYDVFAAMPQEHQEDIDKQARKFAKAMKAPLVFTSATHSINVQKLFKVVLARVFDLRCTLENIEGVGDPLLIF 205
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: K3W6N8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6N8_GLOUD)

HSP 1 Score: 309 bits (791), Expect = 4.330e-97
Identity = 150/203 (73.89%), Postives = 171/203 (84.24%), Query Frame = 1 
Query:   85 IPTMAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF 693
            +  +  + G    RNNVVVKVGMVGDAQVGKT+LMVKYVE KFDE+YI TLGVNFMEKTI LRNTEITFSIWDLGG REF+SMLPLVCNDAVAI FMFDLSRK+TL SVKEWYRQVR +N+NA+ FL+G KYD +T +  EEQ D+ KQARKFAKAM APLIFTSASHSINVQK+FKVVLS+VFDL+C +  I   G+P+L +
Sbjct:   17 LDALGPSVGSGGGRNNVVVKVGMVGDAQVGKTSLMVKYVEGKFDEDYIHTLGVNFMEKTIALRNTEITFSIWDLGGHREFISMLPLVCNDAVAILFMFDLSRKATLTSVKEWYRQVRSINKNAFPFLIGMKYDHFTNLSMEEQEDITKQARKFAKAMKAPLIFTSASHSINVQKLFKVVLSKVFDLKCTVPMIERIGDPILQY 219
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A5D6XRH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRH4_9STRA)

HSP 1 Score: 308 bits (790), Expect = 6.300e-97
Identity = 151/202 (74.75%), Postives = 170/202 (84.16%), Query Frame = 1 
Query:   88 PTMAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF 693
            P+ A       +RNNVVVKVGMVGDAQVGKT+LMVKYVE KFDE+YI TLGVNFMEKTI LRNTEITFSIWDLGG REF+SMLPLVCNDAVAI FMFDLSRK+TL SVKEWYRQVR +N+NA+ FL+G KYD +T    EEQ D+ KQARKFAKAM APLIFTSASHSINVQK+FKVVLS+VFDL+C +  I   G+P+L +
Sbjct:   19 PSAAGVGSGSGARNNVVVKVGMVGDAQVGKTSLMVKYVEGKFDEDYIHTLGVNFMEKTIALRNTEITFSIWDLGGHREFISMLPLVCNDAVAILFMFDLSRKATLTSVKEWYRQVRSINKNAFPFLIGMKYDHFTNFSPEEQEDITKQARKFAKAMKAPLIFTSASHSINVQKLFKVVLSKVFDLKCTVPMIERVGDPILQY 220
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BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Match: A0A067CAP4_SAPPC (Septum-promoting GTP-binding protein 1 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAP4_SAPPC)

HSP 1 Score: 308 bits (788), Expect = 1.090e-96
Identity = 149/188 (79.26%), Postives = 167/188 (88.83%), Query Frame = 1 
Query:  124 RNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGVNFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRKSTLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKFAKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLL 687
            RNNVVVKVGMVGDAQVGKT+LMVKYVE KFDE+YI TLGVNFMEKTITLRNTEITFSIWDLGG REF+SMLPLVCNDAVA+ FMFDLSRK+TL SVKEWYRQVR +N+NA+ FLVGTKYD  T+   EEQ D+ KQARKFAKAM APLIFTSASHS+NVQK+FK+VLS+VFDL+C +  I   G+P+L
Sbjct:   27 RNNVVVKVGMVGDAQVGKTSLMVKYVEGKFDEDYIHTLGVNFMEKTITLRNTEITFSIWDLGGHREFISMLPLVCNDAVAVLFMFDLSRKATLTSVKEWYRQVRAINKNAFPFLVGTKYDHMTSFSPEEQDDITKQARKFAKAMKAPLIFTSASHSVNVQKVFKIVLSKVFDLKCTIPLIQNVGDPIL 214
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5G8_ECTSI2.180e-13096.57SPG1, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
A0A835YI98_9STRA1.750e-11687.56SPG1, ras superfamily GTPase n=1 Tax=Tribonema min... [more]
A0A6V1K250_HETAK8.490e-10882.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UXX0_9STRA4.520e-10581.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CL26_9STRA4.470e-9979.47Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0YJU8_AURAN6.400e-9977.60Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6U3ZUB0_9STRA3.430e-9877.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3W6N8_GLOUD4.330e-9773.89Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XRH4_9STRA6.300e-9774.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A067CAP4_SAPPC1.090e-9679.26Septum-promoting GTP-binding protein 1 n=2 Tax=Sap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:783620..789848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue2.2e-107
Seed eggNOG ortholog2880.D7G5G8
Preferred nameTEM1
KEGG koko:K06682,ko:K07976
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000910,GO:0001100,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005816,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007088,GO:0007093,GO:0007096,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007346,GO:0008104,GO:0008150,GO:0009987,GO:0010458,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0010973,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022402,GO:0023052,GO:0030071,GO:0031028,GO:0031577,GO:0031578,GO:0031991,GO:0032465,GO:0032467,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032954,GO:0032955,GO:0032956,GO:0032970,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0040001,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044732,GO:0044770,GO:0044772,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051293,GO:0051301,GO:0051302,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070727,GO:0071174,GO:0071840,GO:0090068,GO:0097159,GO:0097367,GO:0110020,GO:0140014,GO:1901265,GO:1901363,GO:1901891,GO:1901893,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902363,GO:1902412,GO:1902542,GO:1902850,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903827,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.septation initiation signaling
EggNOG OGsCOG1100@1,KOG1673@2759
Ec32 ortholog descriptionSPG1, Ras superfamily GTPase
Ec32 orthologEc-22_000550.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031
Exons7
Model size2272
Cds size726
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.3815506-UTR-C-linearis_contig83:783619..7850721622930629.3815506-UTR-C-linearis_contig83:783619..785072Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 783620..785072 -
1690881167.859412-UTR-C-linearis_contig83:783619..7850721690881167.859412-UTR-C-linearis_contig83:783619..785072Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 783620..785072 -
1622930629.5333781-UTR-C-linearis_contig83:789755..7898481622930629.5333781-UTR-C-linearis_contig83:789755..789848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 789756..789848 -
1690881167.9611213-UTR-C-linearis_contig83:789755..7898481690881167.9611213-UTR-C-linearis_contig83:789755..789848Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 789756..789848 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930629.4002826-CDS-C-linearis_contig83:785072..7852851622930629.4002826-CDS-C-linearis_contig83:785072..785285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 785073..785285 -
1690881167.874866-CDS-C-linearis_contig83:785072..7852851690881167.874866-CDS-C-linearis_contig83:785072..785285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 785073..785285 -
1622930629.4167073-CDS-C-linearis_contig83:785982..7860571622930629.4167073-CDS-C-linearis_contig83:785982..786057Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 785983..786057 -
1690881167.8919134-CDS-C-linearis_contig83:785982..7860571690881167.8919134-CDS-C-linearis_contig83:785982..786057Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 785983..786057 -
1622930629.4373553-CDS-C-linearis_contig83:786414..7865161622930629.4373553-CDS-C-linearis_contig83:786414..786516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 786415..786516 -
1690881167.9061682-CDS-C-linearis_contig83:786414..7865161690881167.9061682-CDS-C-linearis_contig83:786414..786516Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 786415..786516 -
1622930629.4656394-CDS-C-linearis_contig83:786929..7870161622930629.4656394-CDS-C-linearis_contig83:786929..787016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 786930..787016 -
1690881167.9217682-CDS-C-linearis_contig83:786929..7870161690881167.9217682-CDS-C-linearis_contig83:786929..787016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 786930..787016 -
1622930629.484796-CDS-C-linearis_contig83:787606..7877101622930629.484796-CDS-C-linearis_contig83:787606..787710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 787607..787710 -
1690881167.9315615-CDS-C-linearis_contig83:787606..7877101690881167.9315615-CDS-C-linearis_contig83:787606..787710Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 787607..787710 -
1622930629.4999123-CDS-C-linearis_contig83:788496..7885901622930629.4999123-CDS-C-linearis_contig83:788496..788590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 788497..788590 -
1690881167.940996-CDS-C-linearis_contig83:788496..7885901690881167.940996-CDS-C-linearis_contig83:788496..788590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 788497..788590 -
1622930629.5194786-CDS-C-linearis_contig83:789704..7897551622930629.5194786-CDS-C-linearis_contig83:789704..789755Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 789705..789755 -
1690881167.950944-CDS-C-linearis_contig83:789704..7897551690881167.950944-CDS-C-linearis_contig83:789704..789755Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 789705..789755 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16080.1prot_C-linearis_contig83.16080.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 785073..789755 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16080.1

>prot_C-linearis_contig83.16080.1 ID=prot_C-linearis_contig83.16080.1|Name=mRNA_C-linearis_contig83.16080.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=242bp
MAETKGKDASRNNVVVKVGMVGDAQVGKTTLMVKYVENKFDEEYIMTLGV
NFMEKTITLRNTEITFSIWDLGGQREFLSMLPLVCNDAVAIFFMFDLSRK
STLNSVKEWYRQVRGLNRNAYAFLVGTKYDIYTTMPAEEQRDVDKQARKF
AKAMHAPLIFTSASHSINVQKMFKVVLSRVFDLRCNLEEISGAGEPLLLF
SKEEEDAAAKAKSGSSSSSAGAASGEGATSEPLKGSKGATK*
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mRNA from alignment at C-linearis_contig83:783620..789848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16080.1 ID=mRNA_C-linearis_contig83.16080.1|Name=mRNA_C-linearis_contig83.16080.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6229bp|location=Sequence derived from alignment at C-linearis_contig83:783620..789848- (Chordaria linearis ClinC8C monoicous)
CTCTGCTCTCGGCTCCTCCCCGGTGTGTTCTGTTGCTCCAGCTGCGACCT
TGCGAGGCAACCCACCACACCAGCAGCAGCAGATATCCCTACTATGGCGG
AGACGAAAGGGAAGGATGCAAGCAGGAACAATGTAGTCGTCAAGGTACGC
CCCGCCCCGCCTCTGCTGTTCCGTTCAGCCTCGTCCGCCCCAGTCGGTGT
GTTTGTGGCATCTATACAGACGCAGAGAGAGAGAGAGAGAGAGAGAGAGG
GAACGAGAGACAGCGAGGGCACGGTTTTGTCTGTTGGCCGTGTGGATTGA
AGACCCTCTCAGTCAGATCGGGTCCATACCCTCTCTACAGCAGTAGTTCG
AGTTGCGCACACAACAACATTTTACATTTTATGTGCATACTTCGTACAAG
TATGTGTACTTGCAAAAAAATGATTTTTCCGCCCGGGTAGCACACAACCC
CGCCGGCGGTGTCTGCATGTATGTACACCAACGTGCTGATGTAGTACAGC
AGTAGCCGATGGCATCTTGCGGCCGTAATTGTGTATAGTTGTGACAGACA
GACCCGGAGTTCACCTTCTGGTTGGGGGCGGGGTTGTAAGTGTACTCTTG
TCTTACTTTCGGTATGTGTTTTTCCGTGTATGGATGAGGTACTCAACAGC
ACAAGCCACAACTGCTGCTCTTGCTGCCCTGTACACTGTGGTCAGAGGTT
GAAGCTTCCCCCCACCCAAGGCGGGTGACCCGCGTCGGGTGCACGTCGGG
GGGTTAGGTGCTGAGGAATTTCGCGGCAAGAGCAACAACAGAAGGAAACA
AGGGCTTTGTTTGCGCCAGCAGTGTTGAAATTAGAGAGACATCTCACTGT
CTACCTTCCTACCAACCTCCTTACCACGAAACCCGAGATAAGACGGCGGT
GTGAGGGAAGAAAAATTTGCGACCATCCCGCCCACCCAATCACTATATGA
CAGCTCGACGCTGTAGATCACTTGCATCGCGTTGTTCCTCGTATCACATC
ATATCATATCATATAACCTTTCCATCCCTTTCTCCGAGACTCACATATTA
TACATATCATACGCTGTCGCGGTCGTACTCAAAGACGGCGCCGGTAGGTG
TGGAAAGTTGGCGCTAAGAAGCGAATGAGCAAATGCTTACAGAACCTTCA
TAGTAGCCACCAGTGTTGACGTCGATTTTGTCCATCCTCGATCCGCGCTT
GCCTTGACGAAGCTGGCACCGTTCTCTCTGCTCGCTCGTTGCTCAAACGT
TGCGATAGGTGGGCATGGTGGGCGACGCTCAGGTGGGGAAAACGACGCTG
ATGGTCAAGTACGTGGAGAATAAATTCGATGAGGAGTACATCATGACCTT
GGGTAAGACGAAGACGGGACGAGCAAACGCAGCTGTTTTACGGAAGCGCT
ATCTCTGTATTCAGTACGTGCCGCCTGGCAATGACGAGCTTGACGCTCCA
AATTTTAATTTTCGTGCGTATGTGTTATTCCTATTTAGACTAAATGAGCA
CGTTCAAATCTGGCAAAAGTAAGGTCCTTAGATGGTGGCGCGTGCGTTAA
GAAGGCTTCGGTTTTTTGGTGCGCATTCAACCGTGCCCACCACGACCAAC
ATGCCAGCGTTTTTTCACCACGACTCCTTTTTCGGAGCGACCATGTCAAA
GTTGTACGCGGCAATTTTCTCACATCATACAATGGGAAGATGTACGTTTC
AGCGAGTTTCGAGATGTTTTATCAGGCATGGTTTTAAGTGCTTGGGGGTT
CAGAAAAGCGCTTGACGTGTACAGAGTACGTTGGACGCTTTGGGCGTAAG
TGACTCCAGGCATCCTTTCCGGGCGATGCAGATCGGGCTACCAGGTTCTT
CTTCGGTAAGCTTTGCGGGGTAAACCGTTACAGATTTTTTCAGTGGTTTC
CGCTTCGAGCCTAGTTGCACTTCAACCGGGGCTGTTTTCGCGCATTTGCG
GTATCAACATTGTTCCTTTGTGCAAGTTGTACCCAAAGAGTTGTGCATCC
TTCCACCTGCCAAATGGTGCCCTTGGAAATATAAATAACCTCCAACACAC
ACCACTAAAAAGTTCCCCCGTGTCGCTGCTGTTTTTTCCATTCATTGTTT
GCTCGCGGTGGTGTGCTTGATTTGTTTGCCGCATACAGGTGTAAACTTCA
TGGAGAAGACAATCACCCTCAGAAACACTGAAATCACCTTCAGCATTTGG
GACTTGGGCGGGCAGCGGGAATTCCTCAGCATGCTGCCTTTGGTGAGAAC
GAATGGGGCGCGGCACAGCCTCTCTCTTGCGGTTTGTACTTTTTGTTCTT
GTTTTTGCAAGACGTTGGGCCGGACCGGTTGCAACCTGAAAAAAAACGTT
CCTTATTGCATTTTTCGCTTGTGTTGCTCGACTGGCAGGCGTTTCAGAGT
CGCGGTGATAGTACCGTTTGGGGGATTATCTTGGTTGTTGTACGGCAGGA
GAAAACGCCAGGGGCATCATAGTTTACGCAAGGTGTTATCACCCCGCACC
TCTTTGAGAAAAGATTAACTGCAATGTCGCGAGATGCACTTGCCGCAACG
GGGACAGAGGTATGGAAGTAGGATAACGAGGACGGCGGGGAAAGAGGATA
CGTAGGCAGACGAGCGCGTGTGACTGGCAAGTCAGAGGAGAGTAGAACCC
GCGTAGTTGGAGAATGTGCGCGAAACAGAAGTACGTTGGAGAGATTGAGA
TGGCTGGCTGTGGCGCTTAGGCGGAAGGAGAAGGAGAAGCCGTGTGTTGC
TGGTCGTTCCAGCTCGCGCTTGCCGTCTCTCCCGTTCTTGAGTTCCTTGT
TTGCGGTCCTTATCCTTTCGGTTGGGGTGCAGGTATGCAACGATGCGGTC
GCCATTTTTTTTATGTTCGACCTTTCCCGGAAGAGTACGCTGAACTCGGT
GAAGGAGTGGTATCGACAGGTAAGGGGGGCCGACGGAGACAACATTCCAG
TTCTATGCTAGGTTCGTGTTGAAATCTTCGTCTCCTGTTGTTCGACACGT
TGCTGTGCTCACCTCTCGGTAGGCGCCGCATTTCTGTTGCGTTTTACCGG
GACGGTTGCTCTTTTTTTTTCGCTTACGTGTCGGTTGCGGGTGTACGTAC
GTGTGTAGGTGCTACCACTCGTTTGTTCGAAATCGAAAATCTGGTGTACG
AGTGGCTGTGATTGGGTCAACCCTCCAGTTGAGGTAGCCCCATTTTTCGA
CGTTCGTTTTTGTGTTGAAGATAGAGTATCGTATTCACGAATTGAAGGCC
CGGGGTGGGTTCCACCTTGCGTGATTCTAGCCAACCTCGCTCGCGTGTGT
GTGTTGGTCGTGGGCGGTCCACTGATATATAGGTGCGAGGGCTGAACCGA
AATGCGTACGCGTTTCTCGTTGGGACAAAGTACGACATATACACGACCAT
GCCCGCCGAGGAGCAGCGAGATGTCGACAAGCAGGTACGGGGCACAAAAG
TTCCGCGAATTCGCCCGGTTCTTGCTATTTCCATTGCTACTGTTGCTGTC
CGGGGATGATGCGTACGGGCAGCTGCGTGCCTTTTGCTCCTTCTCCCGGC
ACAGTCATAAGGATATGCGCCTCTCCTCCCAAGTGTAAGAACTTGTTGCG
GTTTCGCGTGAACGGGAGCCTCATGTCCAATCACCTCCATGGTCCCACCC
CCTACCGCCTTGCCCTTTGCCTGCCAATCAAGTCTGTCTCGCCGCGTCTC
TTCTACAGGTATTTATGTCTATGTTGATGTTTCAGCGACATATGGTTTCC
TCTCGTTTGCCGTACCCCGTGTTTTTCTTTTGACCCTTCAGGCACGGAAG
TTCGCAAAGGCTATGCACGCGCCATTGATCTTCACATCAGCGTCGCACTC
CATCAACGTCCAAAAGGCAAGAGTGTGTCTTGGATCATTGTAGCACCATC
AGCGGCCGCTGTTGTTACGAGAGTGGAGCTGAATTTAGCGCTGATCACTT
TGATGGTGTCGCTCCGCCACCGGTGTTGGGATAGTTTTATTGGCAGACGG
AACGGCTGTCGGTGTTTCTGACGTTGCTATTTTAGCGAGCGTGTTCCTTT
CCCCACGGTGTCGATACAACACGGCTGCTGCCGGTGTCGCTTCGTAGTAC
TGTACGGTGTTTGCGATAAACGATAGCCGCGCACGCATCAGCGTATCTCG
AGTACACTGATTAATATTGTAGGTTGTTTTCCTTCCGCGGACCGCAAAAC
TATCACCCGCAAGCTCGTGCTCGCCACAGAAAGACGGATCTTTTGATATT
TTGACGGCGTTCCTCTGAGTAAGCAGAGCAGTGTCAGCCCCACTGCTGCT
GTCCTTTTCAGGACTTTTTGGCGCGTATACAACCACTAAGGATTTCGGCC
GTCAAATCTCCGCCTCTTCAACTGCAGTAGCCTCGAGCAGGCATGAGTGT
TTGTGTCTGAGTCTGCCCCACCCCTTGCTTGTCGCCTCGCCCGCGCCTTC
CGCGTGGGATTGACTTCGACACTGCCCGGCTCATCTTTTGCGAACACATG
TGATGGGCCTTCTTGACCGGCGCCAACCTGTGGACGACTGGTGCACGCAT
TCACCACCTCCAGATGTTCAAAGTGGTGCTGTCGAGAGTGTTCGACTTGA
GGTGCAACCTGGAGGAGATCTCTGGTGCGGGGGAGCCGCTGCTGCTGTTC
TCAAAGGAGGAGGAGGACGCCGCCGCCAAGGCAAAAAGTGGCTCTTCCTC
TTCGTCGGCGGGGGCGGCATCAGGAGAAGGAGCTACCTCAGAACCGTTGA
AAGGCTCAAAAGGTGCCACAAAGTAGTCGAGAGGTAGTTTTGGGGGGACG
AGGAGGTCTGATGCTCGCAGGCCGGTGGAGGGTTCTAGAACCTGTGTGTA
AGCATGCCGCTTCCCTGAGTGGCAGCGGTGGCACGGCAACGCCTTGATTG
GCCCCGAACACCGCGTTCAATCGAGAGAGATTGGGAGAGCAGGGAAAAGC
GCGCAATAGTTTTGCGGTGAGACTCGTCATTTTTTGGGGGCTGCTGGCGT
GACAAGCACCATTTCGTGTGCCAGTCAGTTCTTGTTGCATGTGTTCGAAG
AAGGATTGAAGCGCACAAAAAATTCTGTGGTGTAGCCTCCGTGTGTGTAT
GTTGGCGCGCGCTGAAGCGTTCGTGGTCTGTAGCGGCCATGACCAGGTGC
ATGTATTGGGCTGTAGAGCAGCATGTCGGCCAAACATCGTGGCTGAACAT
ATTTCCTCGTACAGTAGCGCCACCCCAAAATGTCTTGCTCAGGAGGCTCA
CGCATGTCCATGTTGTTGTCGGTTCTGAATATTGTCGAAGCAACCGGAGA
TGAGATGGGCGTGCTTGACCAGTCCCGGCGGCACGCATGGCAGCACACCG
CCGACAATGCGGTCATGGGTAGGCTGCTTTTTGTCGAGGCGATCGAATCA
GCCCTTGGTCTGCCTGGTTGCCGCGTGCGTGCCTCTGTTTTTTTTATCGT
GGTGAAGGGATCACAATCCCTTAGACCTTAAATGAGCACGCAATAAGAGC
ACATAGATGCACACGCTCGGGCTCTTTTAGCCGGCGCTGAAAGGTCTCCA
CTCCTGTTCGACATGATGTGTCTTGACTCTGCAAGTTTTCGATGGCGTTT
TAGCATTTTACATATTCCTGACGGCGCGTACATACGAGGTATCAAAATCA
ATATTCTGCCGACATGTTTTCGGAGCGACTTTTCCCTCCGCGCCACCTGT
TCAGGCCAGGAGTAGATGACAGGTGTTTGTCGAGACGTGAGTTTGTGTGA
TGGCTTGCCGCATGTACAGCAGTAGTGCAGTGATAGTGGCGTCGGTGAAC
TGTCTTTGTTTCTCAGGGTAGGTGCCATTCTTGGAGCCACGCTCTACCTG
TCCGCCCGGCCGTCTTTCACCGGTGTTCGGTACGCAGCAGCAGTAGTCGA
CAGTAGATAAGCTGTTAAAATTGGAGCAGAAACTACATGTATGGGCGTGA
TCTCCTGGGGGGCGGCGGGATAGGACCAGCCGGCGTTTGTTTGCGTTCTG
ATGGATAGGGGGTAAGTAGGTGTTTTTGTGTTGCCGGGTGCTGTCTGCTT
GTCATTACGGCGTATTTCGGCACCTGGTGCGACCAGAGTGGTCTTGGAGA
GGAGAACCGGTCCTCTTGGGCCTAGCTGGGTTCGGTGCAGCGGGCGGGTT
CTGTACACGCACATTGAAATAGTTCGCGGGCCTTAACTTACAGATAATGT
TACAAATAAAAAAACAATTTTTTCGTTCC
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Coding sequence (CDS) from alignment at C-linearis_contig83:783620..789848-

>mRNA_C-linearis_contig83.16080.1 ID=mRNA_C-linearis_contig83.16080.1|Name=mRNA_C-linearis_contig83.16080.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at C-linearis_contig83:783620..789848- (Chordaria linearis ClinC8C monoicous)
ATGGCGGAGACGAAAGGGAAGGATGCAAGCAGGAACAATGTAGTCGTCAA
GATGGCGGAGACGAAAGGGAAGGATGCAAGCAGGAACAATGTAGTCGTCA
AGGTGGGCATGGTGGGCGACGCTCAGGTGGGGAAAACGACGCTGATGGTC
AAGTACGTGGAGAATAAATTCGATGAGGAGTACATCATGACCTTGGGTGG
GCATGGTGGGCGACGCTCAGGTGGGGAAAACGACGCTGATGGTCAAGTAC
GTGGAGAATAAATTCGATGAGGAGTACATCATGACCTTGGGTGTAAACTT
CATGGAGAAGACAATCACCCTCAGAAACACTGAAATCACCTTCAGCATTT
GGGACTTGGGCGGGCAGCGGGAATTCCTCAGCATGCTGCCTTTGGTGTAA
ACTTCATGGAGAAGACAATCACCCTCAGAAACACTGAAATCACCTTCAGC
ATTTGGGACTTGGGCGGGCAGCGGGAATTCCTCAGCATGCTGCCTTTGGT
ATGCAACGATGCGGTCGCCATTTTTTTTATGTTCGACCTTTCCCGGAAGA
GTACGCTGAACTCGGTGAAGGAGTGGTATCGACAGGTATGCAACGATGCG
GTCGCCATTTTTTTTATGTTCGACCTTTCCCGGAAGAGTACGCTGAACTC
GGTGAAGGAGTGGTATCGACAGGTGCGAGGGCTGAACCGAAATGCGTACG
CGTTTCTCGTTGGGACAAAGTACGACATATACACGACCATGCCCGCCGAG
GAGCAGCGAGATGTCGACAAGCAGGTGCGAGGGCTGAACCGAAATGCGTA
CGCGTTTCTCGTTGGGACAAAGTACGACATATACACGACCATGCCCGCCG
AGGAGCAGCGAGATGTCGACAAGCAGGCACGGAAGTTCGCAAAGGCTATG
CACGCGCCATTGATCTTCACATCAGCGTCGCACTCCATCAACGTCCAAAA
GGCACGGAAGTTCGCAAAGGCTATGCACGCGCCATTGATCTTCACATCAG
CGTCGCACTCCATCAACGTCCAAAAGATGTTCAAAGTGGTGCTGTCGAGA
GTGTTCGACTTGAGGTGCAACCTGGAGGAGATCTCTGGTGCGGGGGAGCC
GCTGCTGCTGTTCTCAAAGGAGGAGGAGGACGCCGCCGCCAAGGCAAAAA
GTGGCTCTTCCTCTTCGTCGGCGGGGGCGGCATCAGGAGAAGGAGCTACC
TCAGAACCGTTGAAAGGCTCAAAAGGTGCCACAAAGTAGATGTTCAAAGT
GGTGCTGTCGAGAGTGTTCGACTTGAGGTGCAACCTGGAGGAGATCTCTG
GTGCGGGGGAGCCGCTGCTGCTGTTCTCAAAGGAGGAGGAGGACGCCGCC
GCCAAGGCAAAAAGTGGCTCTTCCTCTTCGTCGGCGGGGGCGGCATCAGG
AGAAGGAGCTACCTCAGAACCGTTGAAAGGCTCAAAAGGTGCCACAAAGT
AG
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