mRNA_C-linearis_contig83.16050.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16050.1
Unique NamemRNA_C-linearis_contig83.16050.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:348752..350303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF2358
Ec32 orthologEc-22_002140.1
Exons3
Model size606
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16050.1prot_C-linearis_contig83.16050.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 348797..350144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.9968786-UTR-C-linearis_contig83:348751..3487961622930619.9968786-UTR-C-linearis_contig83:348751..348796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 348752..348796 +
1690881163.211047-UTR-C-linearis_contig83:348751..3487961690881163.211047-UTR-C-linearis_contig83:348751..348796Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 348752..348796 +
1622930620.0986059-UTR-C-linearis_contig83:350144..3503031622930620.0986059-UTR-C-linearis_contig83:350144..350303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 350145..350303 +
1690881163.2686985-UTR-C-linearis_contig83:350144..3503031690881163.2686985-UTR-C-linearis_contig83:350144..350303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 350145..350303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.041429-CDS-C-linearis_contig83:348796..3488981622930620.041429-CDS-C-linearis_contig83:348796..348898Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 348797..348898 +
1690881163.222171-CDS-C-linearis_contig83:348796..3488981690881163.222171-CDS-C-linearis_contig83:348796..348898Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 348797..348898 +
1622930620.0593605-CDS-C-linearis_contig83:349632..3497051622930620.0593605-CDS-C-linearis_contig83:349632..349705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 349633..349705 +
1690881163.231934-CDS-C-linearis_contig83:349632..3497051690881163.231934-CDS-C-linearis_contig83:349632..349705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 349633..349705 +
1622930620.0803642-CDS-C-linearis_contig83:349917..3501441622930620.0803642-CDS-C-linearis_contig83:349917..350144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 349918..350144 +
1690881163.2512507-CDS-C-linearis_contig83:349917..3501441690881163.2512507-CDS-C-linearis_contig83:349917..350144Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 349918..350144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16050.1

>prot_C-linearis_contig83.16050.1 ID=prot_C-linearis_contig83.16050.1|Name=mRNA_C-linearis_contig83.16050.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=134bp
MRTGWISWTAVATVLFREHGGGAEAFSGYSTTLLATRKARHRFGVPRVSS
GTASPAASGTATAAEHGEDAHALLAKSHDGVDAEGFEDTMKARLLRKLTL
FSSDVFANPVGCCSTHLHQISKTYSDLRSFCHH*
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mRNA from alignment at C-linearis_contig83:348752..350303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16050.1 ID=mRNA_C-linearis_contig83.16050.1|Name=mRNA_C-linearis_contig83.16050.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1552bp|location=Sequence derived from alignment at C-linearis_contig83:348752..350303+ (Chordaria linearis ClinC8C monoicous)
CTCTGCCGGTGCAACTTGGGAGACACACGGCGCAACTGACATTAGATGAG
AACCGGTTGGATTTCTTGGACGGCAGTGGCTACTGTGCTGTTTCGAGAGC
ATGGTGGCGGAGCTGAGGCCTTTTCGGGGTACTCCACAACGCTGCTGGTA
TGCATGACACTCCGGCTCACTACATCGTAGATAGTAGGCTACAGCAGCAG
CAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGTACATGCGTGAACC
GTAGTCTTGACTTCTGTTGGTCATGTAGCCTACGTCAGTATAAGTACGGG
TGTGATGTGCTATTGTCTCCAAAAATATGGCTACCACTGAATCTGCTGTG
ACCATTCATGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCC
CTTTCCGATCAAGGCGAGACATGCACTACACGTTGCGGTGTATTTAGAGT
ACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGGGTC
ACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTCTGTTTCTT
TTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGA
AGGGTGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGAAGTTTGGT
ACTCACGAGCTTTTTTCAGCTATGTTATCGCTTTCACCTGCAAAGTCGCA
AAAGAAACACTTTTGCTTGGAATCGAACTCCAGACTTTGCTGCTAGTGGG
TTCGAGGTTAAACCACTAGTCCACCGGGGCGACGGGCTATTCATAGACTA
TATATATACCATATGATGTACTGGTATGTTTTTTTTATCACGACGTGAAA
AGAAAAAACATTTACGTTTTTCGTGAAACAGGCAACAAGAAAAGCTCGCC
ATCGTTTCGGGGTGCCCCGCGTCTCATCAGGGACTGCCTCTCCGGCGGCA
TCAGGTGAGACGACTTGAAGATGCTTCACGATTGACTTCCAATCGCTGCA
GTGCGCTTCATGGCCCAAAGCTCTGCCGGTGCCTTGATTGTGTCTGTGTG
TAACTACTACTACCTGCTGACGACGCCGCAGAGAGAGGTCGACGTACGCA
TGTACGAAATACATGAGAGCTGCGCCGTCTACGTGTGTATGCTGCTGCTT
GGGGATGGGAATGCAGGAACAGCGACAGCAGCGGAGCACGGGGAAGACGC
CCACGCTCTTCTCGCCAAGAGCCACGACGGTGTTGATGCTGAGGGCTTTG
AAGACACGATGAAGGCAAGACTCCTTCGCAAGCTCACGCTCTTCAGCAGT
GATGTTTTTGCCAATCCCGTAGGATGTTGTTCCACACACTTGCATCAAAT
ATCCAAAACGTATTCCGATCTCCGTAGCTTTTGCCACCATTGAACGTGGA
CGAACGATTGGATTCGGATCGAGTCCGAAAAAACCCTTCTGCCGGCCTGA
CACATCGAGGGCTTCTACATCCACCGCAACCACATGCCGCAGCACACCGA
CTAGGTGTTGATTTTGCTACATCTACACTGCCGACGCCGGAACTACGAAA
AC
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Coding sequence (CDS) from alignment at C-linearis_contig83:348752..350303+

>mRNA_C-linearis_contig83.16050.1 ID=mRNA_C-linearis_contig83.16050.1|Name=mRNA_C-linearis_contig83.16050.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at C-linearis_contig83:348752..350303+ (Chordaria linearis ClinC8C monoicous)
ATGAGAACCGGTTGGATTTCTTGGACGGCAGTGGCTACTGTGCTGTTTCG
AGAGCATGGTGGCGGAGCTGAGGCCTTTTCGGGGTACTCCACAACGCTGC
TGATGAGAACCGGTTGGATTTCTTGGACGGCAGTGGCTACTGTGCTGTTT
CGAGAGCATGGTGGCGGAGCTGAGGCCTTTTCGGGGTACTCCACAACGCT
GCTGGCAACAAGAAAAGCTCGCCATCGTTTCGGGGTGCCCCGCGTCTCAT
CAGGGACTGCCTCTCCGGCGGCATCAGGCAACAAGAAAAGCTCGCCATCG
TTTCGGGGTGCCCCGCGTCTCATCAGGGACTGCCTCTCCGGCGGCATCAG
GAACAGCGACAGCAGCGGAGCACGGGGAAGACGCCCACGCTCTTCTCGCC
AAGAGCCACGACGGTGTTGATGCTGAGGGCTTTGAAGACACGATGAAGGC
AAGACTCCTTCGCAAGCTCACGCTCTTCAGCAGTGATGTTTTTGCCAATC
CCGTAGGATGTTGTTCCACACACTTGCATCAAATATCCAAAACGTATTCC
GATCTCCGTAGCTTTTGCCACCATTGAGAACAGCGACAGCAGCGGAGCAC
GGGGAAGACGCCCACGCTCTTCTCGCCAAGAGCCACGACGGTGTTGATGC
TGAGGGCTTTGAAGACACGATGAAGGCAAGACTCCTTCGCAAGCTCACGC
TCTTCAGCAGTGATGTTTTTGCCAATCCCGTAGGATGTTGTTCCACACAC
TTGCATCAAATATCCAAAACGTATTCCGATCTCCGTAGCTTTTGCCACCA
TTGA
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