mRNA_C-linearis_contig82.16025.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16025.1
Unique NamemRNA_C-linearis_contig82.16025.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:721050..721763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size691
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16025.1prot_C-linearis_contig82.16025.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 721292..721680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.5023916-UTR-C-linearis_contig82:721049..7212911622930607.5023916-UTR-C-linearis_contig82:721049..721291Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 721050..721291 +
1690881157.0827017-UTR-C-linearis_contig82:721049..7212911690881157.0827017-UTR-C-linearis_contig82:721049..721291Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 721050..721291 +
1622930607.546429-UTR-C-linearis_contig82:721680..7217631622930607.546429-UTR-C-linearis_contig82:721680..721763Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 721681..721763 +
1690881157.1216588-UTR-C-linearis_contig82:721680..7217631690881157.1216588-UTR-C-linearis_contig82:721680..721763Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 721681..721763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.5188124-CDS-C-linearis_contig82:721291..7215581622930607.5188124-CDS-C-linearis_contig82:721291..721558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 721292..721558 +
1690881157.0945797-CDS-C-linearis_contig82:721291..7215581690881157.0945797-CDS-C-linearis_contig82:721291..721558Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 721292..721558 +
1622930607.5307796-CDS-C-linearis_contig82:721581..7216801622930607.5307796-CDS-C-linearis_contig82:721581..721680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 721582..721680 +
1690881157.1060483-CDS-C-linearis_contig82:721581..7216801690881157.1060483-CDS-C-linearis_contig82:721581..721680Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 721582..721680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16025.1

>prot_C-linearis_contig82.16025.1 ID=prot_C-linearis_contig82.16025.1|Name=mRNA_C-linearis_contig82.16025.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
MELDDTLCPDARKPEALPAPQPTVHAEVPARAADAIAPPADMVTADPAPA
KAAIERLATMRAAPQGARAPAAIIKKRPRGAIQRPVSAPTCLRRGGGVSP
FSVQSFLLHLRRQAAPISRTS*
back to top

mRNA from alignment at C-linearis_contig82:721050..721763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16025.1 ID=mRNA_C-linearis_contig82.16025.1|Name=mRNA_C-linearis_contig82.16025.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=714bp|location=Sequence derived from alignment at C-linearis_contig82:721050..721763+ (Chordaria linearis ClinC8C monoicous)
CGGCAGGTGACTACGGAAGGGTCGTTGCTGCTGAAGGACGGTAGATCAAC
CGAAAGGATTCAGCTCACGGTCGAGCTTATGCGGCTAGTGAGAAAGGAAG
GGCCGTTGCTTCTGAAGGACGTTCATTCACTATACTCTTCTGTGTTCCAA
AGAAGTTCAAGAACTTAGGTGGGCGGAAACTCATCGCCAACCTCAGGCGC
GGCAAGCTGAAAGGATTACGGTACAACGAAGTGAGCAAGAAGATGGAGCT
CGATGACACCCTTTGCCCGGACGCAAGGAAACCCGAAGCACTTCCAGCGC
CACAGCCAACGGTTCACGCGGAAGTGCCAGCAAGAGCAGCGGACGCCATC
GCCCCTCCGGCAGACATGGTCACCGCCGACCCAGCCCCGGCAAAGGCGGC
GATAGAGAGGCTCGCCACGATGCGAGCAGCCCCGCAAGGTGCCCGCGCGC
CGGCTGCCATTATCAAGAAGCGTCCACGGGGGGCCATTCAAAGACCCGTC
TCAGCGCCAAGTCGACCCGTCCCGACGGGTCGACGTGTCTCAGGCGTGGC
GGCGGCGTCTCGCCCTTCTCCGTCCAATCCTTTCTTCTCCATCTTCGTCG
CCAAGCGGCACCGATCTCCCGTACTTCCTAGTAGACAGCTCGGCGAGCTG
TAAAAAAGCCCTCGCAACGATCTCCTGGACCACTTACAGGGCAGATATGG
CGCACACCCTCCAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:721050..721763+

>mRNA_C-linearis_contig82.16025.1 ID=mRNA_C-linearis_contig82.16025.1|Name=mRNA_C-linearis_contig82.16025.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig82:721050..721763+ (Chordaria linearis ClinC8C monoicous)
ATGGAGCTCGATGACACCCTTTGCCCGGACGCAAGGAAACCCGAAGCACT
TCCAGCGCCACAGCCAACGGTTCACGCGGAAGTGCCAGCAAGAGCAGCGG
ACGCCATCGCCCCTCCGGCAGACATGGTCACCGCCGACCCAGCCCCGGCA
AAGGCGGCGATAGAGAGGCTCGCCACGATGCGAGCAGCCCCGCAAGGTGC
CCGCGCGCCGGCTGCCATTATCAAGAAGCGTCCACGGGGGGCCATTCAAA
GACCCGTCTCAGCGCCAATGGAGCTCGATGACACCCTTTGCCCGGACGCA
AGGAAACCCGAAGCACTTCCAGCGCCACAGCCAACGGTTCACGCGGAAGT
GCCAGCAAGAGCAGCGGACGCCATCGCCCCTCCGGCAGACATGGTCACCG
CCGACCCAGCCCCGGCAAAGGCGGCGATAGAGAGGCTCGCCACGATGCGA
GCAGCCCCGCAAGGTGCCCGCGCGCCGGCTGCCATTATCAAGAAGCGTCC
ACGGGGGGCCATTCAAAGACCCGTCTCAGCGCCAACGTGTCTCAGGCGTG
GCGGCGGCGTCTCGCCCTTCTCCGTCCAATCCTTTCTTCTCCATCTTCGT
CGCCAAGCGGCACCGATCTCCCGTACTTCCTAGACGTGTCTCAGGCGTGG
CGGCGGCGTCTCGCCCTTCTCCGTCCAATCCTTTCTTCTCCATCTTCGTC
GCCAAGCGGCACCGATCTCCCGTACTTCCTAG
back to top