mRNA_C-linearis_contig81.15958.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15958.1
Unique NamemRNA_C-linearis_contig81.15958.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 7.220e-88
Identity = 162/352 (46.02%), Postives = 217/352 (61.65%), Query Frame = 3 
Query:  234 ENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPH---ITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAGP--PHELFVGSVPDVEEDAPRFS*RKLKRRP 1274
            ++R H++ + GG+FMKC  C   K+ R G+PG++PS + + L++       H + ++ DR  +      AM AKAD  PL  V +  DAA   +  LP     THG DRGYSERQK+MAV +EGQF++V+ TPQ LGGGCNL CT+ H    R+ + +  +   P    I H   QVDNCVSENKN+  LGY G L+A  V+  VE+HFM VGHTH KIDQVFSRFS G K  N+FTR   A    A+YT++PV  +TLRN GNFKG+LI  V   ++  +T  RAF++ K G  +V V +K+ MH   + G+  DG       PH+LF+GS P ++ DAP +   KLKR P
Sbjct:   48 KDRPHIRVRVGGEFMKCDICVTLKERRHGSPGVKPSLDSSALASIDRDLAAHRQMVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRV--NRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQ-DAPPY---KLKRVP 393
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 4.830e-71
Identity = 145/326 (44.48%), Postives = 189/326 (57.98%), Query Frame = 3 
Query:  276 MKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
            MKC  CT  K+   GAPGIRP  N    +        H   +  DR  L    + A   +A+  PL  V++Q D A QI + L   GT+   T  G+SERQKVMAV  EG F+DV   PQ  GGG NL+CT+L     RL  M    G R +I  L LQ+DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G    ++FTR+Q    F  +Y +LPVH  TL NLGNFKG+ +    + ++K+  +T  RAF++ K    +V+V  K+FMH +A+ GLT  G       PH LF  + P  +   P
Sbjct:    1 MKCSDCTEIKEKLHGAPGIRPIQNTRQRAEIVRHQKEHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQIRYAL---GTVHPQTHAGFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAG-EVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTFDNVPP 322
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.970e-54
Identity = 122/314 (38.85%), Postives = 175/314 (55.73%), Query Frame = 3 
Query:  249 VKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTD-RGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAG 1187
            +K K  GDFM C  CT+ K+   G  G R   + A     +  +  HL+ +E DR    R E +A  AK++  P   V LQ DAA Q  F  P+  +  HG D RGY+ERQK+   LV G  + VF+ PQ LG G N++CT+L   F     M +    +  +  + +Q+DN VSENKN+ ++G+L AL+  GV+ +V + FM VGHTHI+IDQVFS F+   K   +FTR   A  F +AY  LPV   TL NL NFK ++ P    +++  +TK +AF + K+G   +   +K  +H + + G + DG   G
Sbjct:  325 LKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLFTLF-----MELTLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQP--VTRRIPNITKFQAFNISKEGTA-IVAKVKTKLHHDDWLGFSADGKTVG 630
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.030e-50
Identity = 109/231 (47.19%), Postives = 140/231 (60.61%), Query Frame = 3 
Query:  561 GYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCV--KKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
            G SERQKVMAV  EG F+DV   PQ  GGG NL+CT+L     RL EM    G R HI  L LQ+DNCV ENKN+I++ ++G L+A GVIG+ EV F+ VGHTH K DQVFSR S G    ++FTR Q    F  +Y +LPV   T  NLGNFKG+ +  + +  +K+  MT  RAF++ K    +V+V + +FMH +A+ GLT  G       PH LF  + P      P
Sbjct:  208 GLSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSRLSVGTLGRSIFTRIQLGELFRESYRELPVRIGTPTNLGNFKGLYLADIKLNLRKIRNMTTFRAFRVGKIAG-EVSVWVDRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTFNNVPP 437
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.440e-48
Identity = 95/148 (64.19%), Postives = 116/148 (78.38%), Query Frame = 1 
Query: 1609 GWVVCRFSFGLSNPLSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSAPTAPPP 2052
            GW    F   LSNP  LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+ LKEGN+ T DQGTESVKAVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS++E++++  RAG D GG     ++  PTAPPP
Sbjct:  185 GWFAV-FPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVPISSLEESDSDIEEEQRRERAGGDLGGERSAKVQP-PTAPPP 330
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.060e-45
Identity = 96/150 (64.00%), Postives = 115/150 (76.67%), Query Frame = 1 
Query: 1609 GWVVCRFSFGLSNPLSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGG--SGVVGLRSAPTAPPP 2052
            GW    F   LSNP  LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS+VE+++    A  D GG  S +V     PTAPPP
Sbjct:  234 GWFAV-FPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQGGEWAAGDPGGERSAIV---QPPTAPPP 379
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 2.640e-44
Identity = 94/202 (46.53%), Postives = 126/202 (62.38%), Query Frame = 3 
Query:  648 GCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
            G NL+CT+L     RL  M    G R +I  L LQ+DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G    ++FTR+Q    F  +Y +LPVH  TL NLGNFKG+ +    + ++K+  +T  RAF++ K    +V+V  K+FMH +A+  LT  G    A  PH LF  + P  +   P
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRKIRNITTFRAFRVGKVAG-EVSVWAKRFMHSDAWLDLTATGGAQVAANPHRLFRFAAPTFDNVPP 210
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 3.180e-44
Identity = 128/360 (35.56%), Postives = 176/360 (48.89%), Query Frame = 3 
Query:  219 HQGMEENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTR--------------PHITH-LTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTKGRAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDG--VFAGPPHELFVGSVPDVEEDAP 1241
            +Q   E R  +K    GDFMKC  CT   +   GAPGIRP  +    +        H   +  DR  L  + + A   +A+  PL  V++Q D A QI + L      TH      SERQ++     EG        P+  G    +         NR  E     G                P + H  +   DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G    ++FTR+Q    F  +Y +LPVH  TL NLGNFKG+ +    + ++++  +TK  AF++ K    +V+V  K+FMH +A+ GLT  G       PH LF  + P  +   P
Sbjct:   34 NQIWREERPLIKLARFGDFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEIVRHQKEHHHIVSKDRELLTSHMEAAKREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA-----SERQRLFGA-AEGHG-----RPRRRG----VRGRPFRPADNRWREQPGVHGAVVGPQTTVCNVDQAWPEVLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTKFWAFRVGKVAG-EVSVWAKRFMHSDAWLGLTATGGAQVDANPHRLFRFAAPTFDNVPP 377
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.870e-42
Identity = 84/132 (63.64%), Postives = 103/132 (78.03%), Query Frame = 1 
Query: 1663 VGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGG--SGVVGLRSAPTAPPP 2052
            V  + SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS+VE+++    A  D GG  S +V     PTAPPP
Sbjct:    4 VTSLFSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQGGEWAAGDPGGERSAIV---QPPTAPPP 132
[Close]
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.920e-41
Identity = 81/141 (57.45%), Postives = 105/141 (74.47%), Query Frame = 1 
Query: 1639 LSNPLSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGS----GVVGLRSAPTAPP 2049
            ++N   LVVG+I+SV S  E+G +V +NWFAPV+RKKCRRS+YGRG+WSQ FLK+ N+ TPDQ TES+K+VCFTF+SLLQSGKLP+ VWAAVEESVP SS +E++++  D + +G  G    G        GL  +PT PP
Sbjct:  198 MTNTCPLVVGQIVSVESGGENGGEVLINWFAPVSRKKCRRSRYGRGVWSQQFLKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEAETDDSDSDADGVEGGGAAGGCRGEEQSGLAPSPTIPP 338
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU1_9PHAE7.220e-8846.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE4.830e-7144.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE1.970e-5438.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE3.030e-5047.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE1.440e-4864.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIQ0_9PHAE1.060e-4564.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE2.640e-4446.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE3.180e-4435.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U0_9PHAE4.870e-4263.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI4.920e-4157.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:524579..530685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue8.4e-12
Seed eggNOG ortholog10224.XP_006815072.1
KEGG koko:K06623,ko:K06672
KEGG Pathwayko04068,ko04110,ko04111,map04068,map04110,map04111
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cohesin loading
EggNOG OGsCOG0666@1,KOG0504@2759,KOG1020@1,KOG1020@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons7
Model size2164
Cds size1026
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930604.4986248-UTR-C-linearis_contig81:524578..5254051622930604.4986248-UTR-C-linearis_contig81:524578..525405Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 524579..525405 -
1690881155.640094-UTR-C-linearis_contig81:524578..5254051690881155.640094-UTR-C-linearis_contig81:524578..525405Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 524579..525405 -
1622930604.5203352-UTR-C-linearis_contig81:526074..5261581622930604.5203352-UTR-C-linearis_contig81:526074..526158Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 526075..526158 -
1690881155.6648915-UTR-C-linearis_contig81:526074..5261581690881155.6648915-UTR-C-linearis_contig81:526074..526158Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 526075..526158 -
1622930604.6615574-UTR-C-linearis_contig81:529454..5295311622930604.6615574-UTR-C-linearis_contig81:529454..529531Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 529455..529531 -
1690881155.7367816-UTR-C-linearis_contig81:529454..5295311690881155.7367816-UTR-C-linearis_contig81:529454..529531Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 529455..529531 -
1622930604.6761603-UTR-C-linearis_contig81:530535..5306851622930604.6761603-UTR-C-linearis_contig81:530535..530685Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 530536..530685 -
1690881155.7485604-UTR-C-linearis_contig81:530535..5306851690881155.7485604-UTR-C-linearis_contig81:530535..530685Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 530536..530685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930604.5356252-CDS-C-linearis_contig81:526158..5265131622930604.5356252-CDS-C-linearis_contig81:526158..526513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 526159..526513 -
1690881155.6787596-CDS-C-linearis_contig81:526158..5265131690881155.6787596-CDS-C-linearis_contig81:526158..526513Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 526159..526513 -
1622930604.5532184-CDS-C-linearis_contig81:527247..5274971622930604.5532184-CDS-C-linearis_contig81:527247..527497Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 527248..527497 -
1690881155.6891804-CDS-C-linearis_contig81:527247..5274971690881155.6891804-CDS-C-linearis_contig81:527247..527497Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 527248..527497 -
1622930604.5685718-CDS-C-linearis_contig81:527864..5279531622930604.5685718-CDS-C-linearis_contig81:527864..527953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 527865..527953 -
1690881155.7021391-CDS-C-linearis_contig81:527864..5279531690881155.7021391-CDS-C-linearis_contig81:527864..527953Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 527865..527953 -
1622930604.5864787-CDS-C-linearis_contig81:528230..5283941622930604.5864787-CDS-C-linearis_contig81:528230..528394Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 528231..528394 -
1690881155.714303-CDS-C-linearis_contig81:528230..5283941690881155.714303-CDS-C-linearis_contig81:528230..528394Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 528231..528394 -
1622930604.647953-CDS-C-linearis_contig81:529286..5294541622930604.647953-CDS-C-linearis_contig81:529286..529454Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 529287..529454 -
1690881155.726572-CDS-C-linearis_contig81:529286..5294541690881155.726572-CDS-C-linearis_contig81:529286..529454Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 529287..529454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15958.1prot_C-linearis_contig81.15958.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 526159..529454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15958.1

>prot_C-linearis_contig81.15958.1 ID=prot_C-linearis_contig81.15958.1|Name=mRNA_C-linearis_contig81.15958.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=342bp
MEENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEA
HILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLP
MQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLH
HTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGV
IGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTK
LPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGRAFQLLKDGPMQVTVGM
KQFMHDEAYTGLTGDGVFAGPPHELFVGSVPDVEEDAPRFS*
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mRNA from alignment at C-linearis_contig81:524579..530685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15958.1 ID=mRNA_C-linearis_contig81.15958.1|Name=mRNA_C-linearis_contig81.15958.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6107bp|location=Sequence derived from alignment at C-linearis_contig81:524579..530685- (Chordaria linearis ClinC8C monoicous)
CCGATTCATTGCAGGAGCAAGCGGGCGAGGTTTGGGACTTCATCTGAATC
TAAACACGCTTGCCTCGGCTACATCGACCGTTTCTCCGACATGTTCGGTC
AGCTCATGCCGCATCTCAACGCCACGTACCTCTACCTTGGGAGCATGAAG
GTGAGAGCCTCGCTCCTCGAATGCAAGGAGCCTTTCTGTGTAGCGGCGTG
GCGACGATGTTTTTTCGTTTGTTTTTATGCGTGTTTGTTCCTCTTGATAA
AACGCTCCCTTCCTTGTTGGTCTTCTTGAGGAGGTTGCACACACATACAA
GCATGGTGGTATTATTTTCGTAGGCGATGCTTGTTTGTCGTTCCTTGGCG
ACCTCCATCTCATTGCACACAAACGAACGGGGAGGTTGTCCCGAGTAGTT
TGATTTGCTGACGTTCGATACGGCCTGCATGTAAACGCCCGGTTCCGGGC
AAACAGTATATCTTCGACCTCTCGTCGTTAAAGTCATCTAAACTACGCGG
CTGCAGCACAAGACCTTACCTTGCTTTTCCACACAGACAGACATATATGG
CAGGATGCTGACAAAATGCCCTACGTTGGTCTTCCAACAAGAGGTTGTGT
GTTCAACGCGAGGTGGTATTCGTTGATGCTCGTTCGTTTGTGGATGATTT
GTGCGTGTCTGCGTGTTTGTTTCATCTTCAGCAAATGCTCCCTGTTGGTC
TTTCTTCGGAGGTTGTACATACATACAAGCATGGTGGTATTCTAAGGGTG
GGCGATACTTGTTTGCTGTTCCTCGCCGACCTCCTACTCATAGCACACAA
AAAGAGCGGTGAGGTGTGTCTCAGGTAGCTTGCTTCGCTGAGGTTCGATA
CGGCCTGCACGATGGGTGAAGTTATCGTGAACGTGCGCTTCCGGGCGAAC
CAGTACATCTTCGACTGCAGCATAAGATATTACCTTGCTTTCCATACAAA
CACATCCGGCAGGGTGCTGGGCCTATAGACTTATGACCAACAAGGATGGC
TTCAAGCAGGGTGTTAACGCACCTGAGCTACCGGCATGTCCTTCCCCGAT
AGCTCATCGCTTTCGAACTGAACTCAGTTACGTTTCGCTGTTGTTGTCCG
CCCGTTGCCCAACCCCCATTTTCATCCCGCTCGTGTTGTCGCTACCTGAT
TTAGGAGCTCTACGAGGACTTCGCAGAGTCCAGGCGTACGGCAGGGCAGT
CGATTCCCAGCTACACATACTTCACCAGGGTATGGAGGAGAACCGCAGCC
ACGTCAAGCCCAAGACCGGAGGCGACTTCATGAAATGCTATCATTGCACC
GTGTACAAGGACACGCGTTTCGGGGCGCCGGGCATCAGACCGTCGACCAA
CCCCGCAACACTCTCTGCTGCGAAGGAGGCACACATCCTGCACCTCAAGG
TATGATGCTCATAGCGAATATGGTTTGTGTCACCCAGGGCCTTTCCTATC
TCGGAAGATACGCGAGCGGGGGTTGATGTTGCTCCTGTTCGCCGTAGGGC
GTGTTTGTTCGGGAGGCGGGGTGGGGTGTGTGGGGGGGGGGCTTATTCTT
GACGACACCGAAACAAGTCCAACCTAGACGCTACCTCGACCAGCGACTTG
TTCTTCGTGCTCTTGTACACGTCATCCGTTTGCCGGGGTTGGGCTGCAAT
CCAAGCCCTCAGAACCACGTTCAACTGCTGTGGGTGATCGTTGAAAATTG
TTTGCAGTCGCTGGATTTGTGCGGTAGCTTAATAATGCTGGAGAAGGACG
ACATGTCGGGATTGTTGCCTAACTGCTCGGGTGAAAAAGAGTGTTCGGCT
GGCAGTGAAAGCCTACCCAGTAAGAGGGTCGTTTGTTTGCACTCTCTCCC
AACGACTGTATTGTCCTGCCGGATGAAGAGCATGCTTCTCTCATCGTATG
CATGCATGAACACAACTCGGGGCATGCGTTTTCAACCTTTTGTTTACACA
TACACGAACACACCGCTCCCACACCCAGGCATCAGTTAACGACTGGACGC
ACGGAAAAGTGGCTGGTCTTGGCCCGTTGCTTTTTCCCTGCACTCCCGGC
ATCATGATAGTGCCGTACGCCCTCAAAAGGACACGAACATGCCACACCGT
GCGCCCCTGCAACAATACATATCCTGCTCGACGTCTGCTTTTCGAACGAT
CTTCCACCACCCTGGAATTTGATCGAAGTGCACTACACACTTTCAATATC
CGATACAAACACCCCCACCCGCTACGTTCGAGAGTTTGAACCCTGCTTTC
TGTGTTACCCTTCCACGCCTCCTTGCCTTGTCTGGACTCAGGGTATCGAG
CTCGATCGCGCGTGCCTGTTGAGAAACGAGCAGCGGGCGATGGAGGCGAA
GGCCGATCGCGATCCTCTCAGGAACGTCAGTTTACAAGCTGATGCGGCGG
GGCAGATTGCGTTCGGTCTCCCCATGCAGGGAACCCTAACTCACGGCACA
GACAGGTGTGGTGTGACGGAGTTGTATTCTTTCCTTTCCTCCAGATCTAT
GTCGTTGTTGTTGGGCGGCGAGAAGAAACGATGGTGTGGCTGCAAGGACC
ATTATCGGCTCGGGAGGGTAGTGTCTCTTGTGTTTGCACTAACCTTGACC
TCTTCAAGGGCCATCCCAATTGACGGATCGCGGCATCTACACGCCCGAAG
GACACAATATTATGCGTCAACACATGTGGATGTCGGTGTCAACACGGTCG
TACACCTCGCCGTGTCTAACGTGTTGTGGCAGGGGCTACAGTGAACGCCA
AAAAGTGATGGCTGTGCTCGTCGAGGGCCAATTCATCGACGTCTTTCTCA
CGCCGCAGAATCTTGGAGGAGGTAAGCTAAGATTTACTTGTGAGAGGTTG
ATGTCGGGTTTCTGTCGTCATTTCTTCGGTGATGCGTGCATGCAACATAG
CTGTGTCTTTCGAATAGCTTAACGCACTGCTGCATTGATCACCGGTCTGA
TGATGTTAGGTTCAAGCAAATGAGTCCCCGGTCGTCCCATGTAGGAAAGG
CATTCAAGAAAAATCAGCTCCTGCTTTGTCGTGGTTCCAATTGATATTTA
GTATTCTTCACTGACAGAAAAAATAGTGGCCGTTGGGGAATTCGAATAAG
GCCGTCTTCCCCGTGCACGCATGCGCAGAAGCCAATATCGAGCTCCGCCT
CATATTCCCCTCGTGTACGCGTCGACCGGAAATCCCAGGTTGCAACCTCA
TCTGCACTTCCCTGCACCACACCTTCAACCGGCTGTTCGAGATGCACGTT
CCCGCCGGGACTCGACCACACATCACCCACCTCACGCTCCAAGTGGACAA
CTGCGTTAGTGAGAACAAGAACCACATTCTGCTGGGCTACCTGGGAGCCC
TCATTGCTCACGGCGTCATTGGCGCCGTGGAGGTGCACTTCATGCCCGTA
GGGCATACACACATCAAGATCGATCAAGTCTTCTCAAGGTGTGTTGTCAA
GGCTAGGCTGTCCTGTTGGTTGATACATGAAATTCGGTGGGTTGGCAGCA
GCCCCAAGTTTCGCATGATGTCGCCTCCCCACCGTTTTAAGATTATTTTT
CCCGTTATTCGATGTCGCCGACGCCTATGCCCTTCATTTCGTTCTCGTAG
CGTTGTCTGGCCTGACAGTACGTAACCCTAACCCTAAAGTTTCACGACGT
AGCCGCAACAACTCTGTCTACGTTGTTCCTAGACCCCACCGTCTTCGATT
GATTGCGTACTTGTTTCGCCGTGTTCTCTCTTTGTTCGGTTCATTTGACA
TCGCTTGCCTAGTCTGTAGGTGCGAAGGTGTGCACCCGACAGGTCTTCAT
TTACCGAAGGCCCTGTGCGTTTGGTTTTTGCCTTTCCTGTGCCGATGCTT
GTGGCACCTTTGATTCCGGCACATCGTAGTGTTGCACACATAGGTATATA
GCCCGTGCCCACACGATCGACCGCATAATGCTTCCATCGAGCACGGCCCG
ATGTGTGTACTGCATGTGCGAACGACCGCAAAGAGGAAAGCAAGTCAGTG
CCCTCTTTTGTTTTGAACACCAAGCAGGTGGTGACGCCCTATTATCGTCT
TAACCCATTCAATCACCGCTTTGTCTTGCAAGCTAGCTGTGTACCATATC
TTCGCGTAAATGGTTGTATGGCTCACCTCTTGTTTCGCTTTCGTATTCTG
CCCCCTCCAATATGTGTGATAGGTTTTCCACGGGCTGCAAGCACCTGAAC
CTCTTTACGCGGGCGCAGCAGGCGGCGGCCTTTTCAGCGGCGTATACGAA
GCTGCCGGTTCACACGACCACCCTCAGAAACCTGGGAAACTTCAAAGGGA
TCCTGATCCCTGGCGTTTGCGTCAAGAAACTTCACGGCATGACCAAGGGG
CGCGCTTTCCAGTTGCTCAAAGACGGTCCGATGCAGGTCACGGTGGGCAT
GAAGCAGTTTATGCATGACGAGGCGTACACGGGCTTGACAGGGGATGGGG
TTTTCGCGGGGCCGCCGCATGAGCTGTTCGTCGGTAGCGTCCCGGATGTA
GAGGAGGACGCTCCCCGTTTCAGTTGAAGGAAGTTGAAGAGGCGACCCTC
AACAAGATACAGCAACGCTACGATAGCGTCCACCCGAGATTGGAGTCCCT
GTTCCCCGACGGTGAGATACAGTCTTTTTATTATCGAAGGTAGTTGCGTG
CGGAGTTGCGCCTTTGTCACCTAGGTTTGCCGTGCCTTGCGCCAAACTTT
TTTTTTGTCTTCGACTCCCGCGCCATGTGTGATCTCATCCAACTTTGCCT
GGTGTTTGGGCACGTTAATGAAAGACAACCTGTTGGCATGCTTGTGTTGT
GGGCTGTATGCTAAAGTGTTCATATCATATTTTTGGTCGACCACCAGCGC
GGGGGAAAACAAAGGACTCGCGTTTTTTTTTCTTTTTTTTGGGAAGATTG
TGTGTGACCCACCTCCTGCGGTATGTCTCCCTTTCCATCGCCGTTCGGGT
GCCGGTGTCCTCTCTCCCACGCAAAGTTGACCTTGTTTTTGGGCCCGCGT
TGTTGTCGCTCTCCGCTCATCGTATGTTTCGCGTGCGTGGAAACTAGATG
TTAGTATTGTACTTTTGCCGGGCATGGAAGTCACGACCTAGCCTGTCGGA
AGCTGTCGGAGCTGACTCACTGGCCGTAGGTTATGAAGTGCTGCAGGGGT
GCGACATTTGACGAGAAAAACTTCCCTCCAGCGCGTTCGTCCTTTCCCTC
GTCCGTGTATCTTCCGCGCGAAATCTCACCCGCGTTAATCCCTCCCTGTT
CTTTTCTCAACCGCTTCCGCTCCCGTGCAGATGCCACCACGCGAGCGGAG
TGCATCCGCGAGATGAATGCCTCTGTTAAACTGCTGCGTGAGACGGGAAC
CAAAGCTTGGGATCTTCCGAGCTTGACCAGGAGAGCTGGACAGGATGACA
GCTCCGATGGTGAAAGTTCGGATAGTGACAACTCGGATGACGAGAGGCTT
AATGACAGCGGCGCCTTGGGCAACGTGTTGCCGGACGCATTGCCCGATGG
GCCGGTGGCGAGGGGTGGGAGTGGTGGTGCTGCAAGAGGTTTGCGCTTGG
AGGTTGGGTGGTTTGCCGTTTTTCCTTTGGGTTGTCGAACCCCCTCTCGC
TGGTGGTTGGCAAAATTCTTAGCGTGAACTCGAGCGCAGAACACGGGGAT
CAGGTGACCGTGAACTGGTTTGCGCCTGTTGCACGCAAGAAATGTCGTCG
ATCTAAGTATGGCAGGGGCATATGGTCGCAGGATTTTTTGAAGGAGGGCA
ATAGATTCACACCGGATCAGGGTACGGAGTCGGTGAAAGCTGTATGCTTC
ACGTTTCGTTCCTTGCTGCAGAGCGGGAAACTGCCGAATTCGGTCTGGGC
TGCGGTTGAGGAGAGTGTTCCGTATTCCTCTGCGGATGAAAGTGATTCAG
AGGTAGAAGATGACGAGCAGGAGGGGCGGGCGGGGTCTGACACGGGGGGG
TCAGGTGTGGTTGGGTTGAGGTCAGCCCCCACTGCACCACCCCCTTGCGA
CTGTGACCGCGCCAGTCCCTCGGCCTCCCACCGCTGTGCCTGCGCCTCGC
CCTCCGCCAGCCCCAGGCGTGCCGTTGACGGCGGCTCACTATAGACCACG
TAGGTCT
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Coding sequence (CDS) from alignment at C-linearis_contig81:524579..530685-

>mRNA_C-linearis_contig81.15958.1 ID=mRNA_C-linearis_contig81.15958.1|Name=mRNA_C-linearis_contig81.15958.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2052bp|location=Sequence derived from alignment at C-linearis_contig81:524579..530685- (Chordaria linearis ClinC8C monoicous)
ATGGAGGAGAACCGCAGCCACGTCAAGCCCAAGACCGGAGGCGACTTCAT
GAAATGCTATCATTGCACCGTGTACAAGGACACGCGTTTCGGGGCGCCGG
GCATCAGACCGTCGACCAACCCCGCAACACTCTCTGCTGCGAAGGAGGCA
CACATCCTGCACCTCAAGATGGAGGAGAACCGCAGCCACGTCAAGCCCAA
GACCGGAGGCGACTTCATGAAATGCTATCATTGCACCGTGTACAAGGACA
CGCGTTTCGGGGCGCCGGGCATCAGACCGTCGACCAACCCCGCAACACTC
TCTGCTGCGAAGGAGGCACACATCCTGCACCTCAAGGGTATCGAGCTCGA
TCGCGCGTGCCTGTTGAGAAACGAGCAGCGGGCGATGGAGGCGAAGGCCG
ATCGCGATCCTCTCAGGAACGTCAGTTTACAAGCTGATGCGGCGGGGCAG
ATTGCGTTCGGTCTCCCCATGCAGGGAACCCTAACTCACGGCACAGACAG
GGTATCGAGCTCGATCGCGCGTGCCTGTTGAGAAACGAGCAGCGGGCGAT
GGAGGCGAAGGCCGATCGCGATCCTCTCAGGAACGTCAGTTTACAAGCTG
ATGCGGCGGGGCAGATTGCGTTCGGTCTCCCCATGCAGGGAACCCTAACT
CACGGCACAGACAGGGGCTACAGTGAACGCCAAAAAGTGATGGCTGTGCT
CGTCGAGGGCCAATTCATCGACGTCTTTCTCACGCCGCAGAATCTTGGAG
GAGGGGCTACAGTGAACGCCAAAAAGTGATGGCTGTGCTCGTCGAGGGCC
AATTCATCGACGTCTTTCTCACGCCGCAGAATCTTGGAGGAGGTTGCAAC
CTCATCTGCACTTCCCTGCACCACACCTTCAACCGGCTGTTCGAGATGCA
CGTTCCCGCCGGGACTCGACCACACATCACCCACCTCACGCTCCAAGTGG
ACAACTGCGTTAGTGAGAACAAGAACCACATTCTGCTGGGCTACCTGGGA
GCCCTCATTGCTCACGGCGTCATTGGCGCCGTGGAGGTGCACTTCATGCC
CGTAGGGCATACACACATCAAGATCGATCAAGTCTTCTCAAGGTTGCAAC
CTCATCTGCACTTCCCTGCACCACACCTTCAACCGGCTGTTCGAGATGCA
CGTTCCCGCCGGGACTCGACCACACATCACCCACCTCACGCTCCAAGTGG
ACAACTGCGTTAGTGAGAACAAGAACCACATTCTGCTGGGCTACCTGGGA
GCCCTCATTGCTCACGGCGTCATTGGCGCCGTGGAGGTGCACTTCATGCC
CGTAGGGCATACACACATCAAGATCGATCAAGTCTTCTCAAGGTTTTCCA
CGGGCTGCAAGCACCTGAACCTCTTTACGCGGGCGCAGCAGGCGGCGGCC
TTTTCAGCGGCGTATACGAAGCTGCCGGTTCACACGACCACCCTCAGAAA
CCTGGGAAACTTCAAAGGGATCCTGATCCCTGGCGTTTGCGTCAAGAAAC
TTCACGGCATGACCAAGGGGCGCGCTTTCCAGTTGCTCAAAGACGGTCCG
ATGCAGGTCACGGTGGGCATGAAGCAGTTTATGCATGACGAGGCGTACAC
GGGCTTGACAGGGGATGGGGTTTTCGCGGGGCCGCCGCATGAGCTGTTCG
TCGGTAGCGTCCCGGATGTAGAGGAGGACGCTCCCCGTTTCAGTTGAGTT
TTCCACGGGCTGCAAGCACCTGAACCTCTTTACGCGGGCGCAGCAGGCGG
CGGCCTTTTCAGCGGCGTATACGAAGCTGCCGGTTCACACGACCACCCTC
AGAAACCTGGGAAACTTCAAAGGGATCCTGATCCCTGGCGTTTGCGTCAA
GAAACTTCACGGCATGACCAAGGGGCGCGCTTTCCAGTTGCTCAAAGACG
GTCCGATGCAGGTCACGGTGGGCATGAAGCAGTTTATGCATGACGAGGCG
TACACGGGCTTGACAGGGGATGGGGTTTTCGCGGGGCCGCCGCATGAGCT
GTTCGTCGGTAGCGTCCCGGATGTAGAGGAGGACGCTCCCCGTTTCAGTT
GA
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