mRNA_C-linearis_contig81.15953.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15953.1
Unique NamemRNA_C-linearis_contig81.15953.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:381937..382113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size178
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.6740303-CDS-C-linearis_contig81:381936..3821131622930603.6740303-CDS-C-linearis_contig81:381936..382113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 381937..382113 -
1690881155.230273-CDS-C-linearis_contig81:381936..3821131690881155.230273-CDS-C-linearis_contig81:381936..382113Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 381937..382113 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15953.1prot_C-linearis_contig81.15953.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 381937..382113 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15953.1

>prot_C-linearis_contig81.15953.1 ID=prot_C-linearis_contig81.15953.1|Name=mRNA_C-linearis_contig81.15953.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=59bp
MPLGVMSGGSDSGAILAAMDAGVRPGPASAGLPGSGPGGNDNGVHVQLHA
ITKIHDQKA
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mRNA from alignment at C-linearis_contig81:381937..382113-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15953.1 ID=mRNA_C-linearis_contig81.15953.1|Name=mRNA_C-linearis_contig81.15953.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at C-linearis_contig81:381937..382113- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTCGGCGTGATGAGCGGCGGCAGCGATAGCGGTGCCATCCTAGC
AGCGATGGATGCAGGAGTTCGACCAGGCCCAGCGTCTGCAGGGCTACCGG
GCTCTGGTCCAGGCGGCAACGACAACGGCGTGCACGTGCAGCTGCATGCG
ATCACCAAGATCCATGACCAGAAGGCA
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Coding sequence (CDS) from alignment at C-linearis_contig81:381937..382113-

>mRNA_C-linearis_contig81.15953.1 ID=mRNA_C-linearis_contig81.15953.1|Name=mRNA_C-linearis_contig81.15953.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at C-linearis_contig81:381937..382113- (Chordaria linearis ClinC8C monoicous)
ATGCCTCTCGGCGTGATGAGCGGCGGCAGCGATAGCGGTGCCATCCTAGC
AGCGATGGATGCAGGAGTTCGACCAGGCCCAGCGTCTGCAGGGCTACCGG
GCTCTGGTCCAGGCGGCAACGACAACGGCGTGCACGTGCAGCTGCATGCG
ATCACCAAGATCCATGACCAGAAGGCAATGCCTCTCGGCGTGATGAGCGG
CGGCAGCGATAGCGGTGCCATCCTAGCAGCGATGGATGCAGGAGTTCGAC
CAGGCCCAGCGTCTGCAGGGCTACCGGGCTCTGGTCCAGGCGGCAACGAC
AACGGCGTGCACGTGCAGCTGCATGCGATCACCAAGATCCATGACCAGAA
GGCA
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