prot_C-linearis_contig8.15820.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15820.1
Unique Nameprot_C-linearis_contig8.15820.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length596
Homology
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BLAST of mRNA_C-linearis_contig8.15820.1 vs. uniprot
Match: D8LM12_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM12_ECTSI)

HSP 1 Score: 613 bits (1582), Expect = 1.110e-212
Identity = 378/602 (62.79%), Postives = 409/602 (67.94%), Query Frame = 0 
Query:   10 EEVWARGRRHVKISKLYLTGLLKRAPNIFVALAWSQAFWLFLEATAGNADSRGYVRLSTVACYALALHTGGHLVLSRYSSGRHKLGHHALEFLLDLVTDVVGFAWINFAEEMLAQVFEVRAKTTLLYAMLAFVASLGAMEAGSLTRGLLDWPVDLEETANQFDAGSFALPTSWLITQAVHIGLYGFFYRTAGGQDGRGSGTRGDEDDVVDIHPIASFFLLAYALLCSLVATRVVGGTVAASSLAVDGNAAIIDGGV----DDGCGDGRTRNDLVIQAISSYEVTAAGATDAEAGTGPPARXXXXXXXXXXXXXXXXASPRSAG--FSHPGREPPLKP-DGGGEGHESASLAA-------------AALVEEAGRARQESLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAVAYATLSTALGVCIMVRGADKLDASLRGDRTAA-AVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMYRDA-VRASHARRLLVVVGGVSLVVGWAWEEAFDLVLEGLVGEKADAGTVLAKLALAVVSTAVVLGREVRAAGHGHHGXXDGGASXXXXXXXAGTGVRGELLEPLVASND 589
            +EV+A+GRRH+KISKLYL GLLKR PNIFVALAWSQAFWL LEATAGN DSRGYVRLS+VACYALALH GGHL+L RYSSGR KL HHALEFLLDLVTDVVGFAWIN AEEMLAQVFEVRAKTTL+YA LAF ASLGAME GSL R LLDWPV  EETANQFDAGSFALPTSWL+TQ VHIGLYGFFYRTAGGQ GRG    G+EDDVVD+   AS FLLAYALLCS +ATRV+GGTVAA                     +  G   +R+DLVI+AISSY VTAA A+DA                          S R  G   +  G     K  DGGGE   +A LA              AA  E+A   R++SLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGA AYA LSTALGVC+MVRGADKL  S R    A  AVN                                 RDA VR+ HARRLLVVVGGVSLVVGWAWEEAFDL LEGL+G++ADA TV+AKL+LAV +T VVLGREVR AG       D G         AG G  G LLEPLV + D
Sbjct:    2 DEVYAKGRRHLKISKLYLKGLLKRGPNIFVALAWSQAFWLILEATAGNEDSRGYVRLSSVACYALALHAGGHLLLHRYSSGRRKLSHHALEFLLDLVTDVVGFAWINVAEEMLAQVFEVRAKTTLVYAALAFAASLGAMELGSLARSLLDWPVGFEETANQFDAGSFALPTSWLVTQGVHIGLYGFFYRTAGGQGGRGGD--GEEDDVVDVRLAASLFLLAYALLCSALATRVIGGTVAAXXXXXXXXXXXXXXXXXLTRSNSGGSTGSRSDLVIRAISSYGVTAAQASDAAXXXXXXXXGDVEASSTPSCGGGRNTSYREGGGDVADVGPSNSTKVGDGGGE-RGAAPLAXXXXXXXXXXXXXXAAGGEDA---RRDSLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQEELEFRFGPALGAAAYAALSTALGVCVMVRGADKLAGSNRRKNGAGGAVNDSVGGALGSRPGGGYFHVERPEEDGEETRR---RDAAVRSYHARRLLVVVGGVSLVVGWAWEEAFDLALEGLLGDEADAATVVAKLSLAVAATVVVLGREVRRAGR-----RDAGGGDLHDHNGAGEG-GGGLLEPLVPTGD 588
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM12_ECTSI1.110e-21262.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 528..545
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 375..392
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 432..489
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 393..411
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..153
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..196
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 509..527
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 490..508
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 546..595
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 154..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 412..431
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 52..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 63..84
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..133
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 197..374

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:3693089..3696187 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15820.1mRNA_C-linearis_contig8.15820.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 3692924..3696972 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15820.1 ID=prot_C-linearis_contig8.15820.1|Name=mRNA_C-linearis_contig8.15820.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=596bp
MSSSLEGTFEEVWARGRRHVKISKLYLTGLLKRAPNIFVALAWSQAFWLF
LEATAGNADSRGYVRLSTVACYALALHTGGHLVLSRYSSGRHKLGHHALE
FLLDLVTDVVGFAWINFAEEMLAQVFEVRAKTTLLYAMLAFVASLGAMEA
GSLTRGLLDWPVDLEETANQFDAGSFALPTSWLITQAVHIGLYGFFYRTA
GGQDGRGSGTRGDEDDVVDIHPIASFFLLAYALLCSLVATRVVGGTVAAS
SLAVDGNAAIIDGGVDDGCGDGRTRNDLVIQAISSYEVTAAGATDAEAGT
GPPARAGPPPPPAETPEAASSASPRSAGFSHPGREPPLKPDGGGEGHESA
SLAAAALVEEAGRARQESLRRGLKAYMRLTVGMMVGWAYNLWGQVEFRQE
ELEFRFGPALGAVAYATLSTALGVCIMVRGADKLDASLRGDRTAAAVNDD
GGGGFGRPGGAFHGGRTAEEEAAAAAAEEMYRDAVRASHARRLLVVVGGV
SLVVGWAWEEAFDLVLEGLVGEKADAGTVLAKLALAVVSTAVVLGREVRA
AGHGHHGHHDGGASGGHAAGGAGTGVRGELLEPLVASNDRDAAVL*
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