prot_C-linearis_contig8.15706.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15706.1
Unique Nameprot_C-linearis_contig8.15706.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length503
Homology
BLAST of mRNA_C-linearis_contig8.15706.1 vs. uniprot
Match: A0A6H5JH78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH78_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.410e-49
Identity = 172/415 (41.45%), Postives = 193/415 (46.51%), Query Frame = 0
Query:  122 PKWVRIGEKVCFSTVVAAVLIPSSHDLTPSTKRELWWQPADYAEFRVNYATHMHNPSFELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSRPPNPDEGVSG--GRSHAASAGASGGXXXXXXXXXXXAAAPSQDRLPKSKPSTRYEK---SARARPVAQLQQYNNAPVRHRVGGGAGYKASPQRPHHSAYMAQH----------QFHGMQQXXXXXXXXXQGQH---------AAGFGRRDARHDPYLAPRGGGNMNNGRYQPQHHXHAGHAV--------GNTIGRHGPQQQQQQFFVNGNPAGAAYR--SSNGPFVEAFLPRHGAGGVTGGVAMAAAVPAQAFSSRVGGGVAGVVSRSAVGVGVGHMPVPFQACNSSQFSMWRSQVVFAPIMQMQ 502
            PKWVR+GEKVCFST+VAAVLIPSSHDLT +TKRELWWQP DYAEFRVNYATHMHNPS ELEE                                           L +RP NP E  +G  GR H       GG           AAAPSQ+R+ KS    R ++   SA    + Q Q         RV G AG+   PQ+                      H  QQ          G H         AAG GRRDARHD YLAPRG  NMN+        X              GN  G + P QQQQQ          A+R  ++NGP V+AFLP    GGV GGV +A A     F SR  GG+ G    SAV  GV     P     SSQFSMWRSQ+VFAP MQMQ
Sbjct:  152 PKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMHNPSIELEEQERQETMGPAPVVPTTANADTPASTATVEGVLVVAASPAPAP-LAARPVNPLEATAGASGRRHG---NGGGGNHKVGIDAGGGAAAPSQERVSKSYRQERNQRPWSSAGPNRLHQHQHKTPPAGPRRVSGPAGF---PQQXXXXXXXXXXXXXXXXXXXXNVHPQQQPVVMM-----GGHPGYGNVHAAAAGLGRRDARHDRYLAPRGV-NMNHAHXXXXXXXXXXXXXXXXXXXVNGNPSGVNCPPQQQQQRMSR-----PAFRGVNANGPVVQAFLPHQAPGGVRGGVVLAPATTG--FPSR--GGM-GSPPHSAVAGGVVGNGNP-----SSQFSMWRSQLVFAPAMQMQ 538          
BLAST of mRNA_C-linearis_contig8.15706.1 vs. uniprot
Match: D7G8G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G4_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.680e-46
Identity = 206/385 (53.51%), Postives = 224/385 (58.18%), Query Frame = 0
Query:  122 PKWVRIGEKVCFSTVVAAVLIPSSHDLTPSTKRELWWQPADYAEFRVNYATHMHNPSFELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTSRPPNPDEGVSGGRSHAASAGASGGXXXXXXXXXXXAAAPSQDRLPKSKPSTRYEKSARARPVAQLQQYNNAPVRHRVGGGAGYKASPQRPHHSAYMAQHQFHGMQQXXXXXXXXXQGQHAAGFGRRDARHDPYLAPRGGGNMNNGRYQPQHHXHAGHAVGNTIGRHGPQ----QQQQQFFVNGNPAGAAYRSSNGPFVEAFLPRHGAGGVTGGVAMAAAVPAQAFSSRVGGGVAGVVSRSAVGVGVGHMPVPFQACNSSQFSMWRSQVVFAPIMQMQ 502
            PKWVR+GEKVCFST+VAAVLIPSSHDLT +TKRELWWQP DYAEFRVNYATHMHNPS ELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L +RP NP E  +G             XXXXXXXXXXX AAPSQ+R+  SKP  R E+     PV  ++ +         G G G+ A                                  AAG GRRDARHD YLAPRG  NMNN        X              P               +P      ++NGP V+AFLP    GGV GGVAMA A PA  F SR  GG+      SAV  GV     P     SSQFSMWRSQ+VFAP MQMQ
Sbjct:  155 PKWVRVGEKVCFSTIVAAVLIPSSHDLTVATKRELWWQPTDYAEFRVNYATHMHNPSIELEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LAARPVNPLEATAGASGRRHXXXXXXXXXXXXXXXXXXXAAPSQERV--SKPY-RQERQ----PVMMMRGH--------PGYGNGHAA----------------------------------AAGLGRRDARHDRYLAPRGV-NMNNAHXXXXXXXXXXXXXXXXXXXXNPSGVNCXXXXXXXXRMSPPAFRGVNANGPVVQAFLPHQAPGGVRGGVAMAPATPA--FPSR--GGMMASPPHSAVAAGVVGNGNP-----SSQFSMWRSQLVFAPAMQMQ 479          
BLAST of mRNA_C-linearis_contig8.15706.1 vs. uniprot
Match: D8LTF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTF9_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.610e-8
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 0
Query:  125 VRIGEKVCFSTVVAAVLIPSSHDLTPSTKRELWWQPADYAEFRVNYATHMHNP 177
            VR+G +V F+TVVAA+LIPS+ DL  + ++ELWWQ  DY +FR+N+   M +P
Sbjct:  126 VRVGSRVSFNTVVAAILIPSAKDLHAAARQELWWQETDYRDFRINFIQFMRSP 178          
BLAST of mRNA_C-linearis_contig8.15706.1 vs. uniprot
Match: A0A6H5JK69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK69_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.440e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 0
Query:  125 VRIGEKVCFSTVVAAVLIPSSHDLTPSTKRELWWQPADYAEFRVNYATHMHNP 177
            VR+G +V F+TVVAA+LIPS+ DL  + ++ELWWQ  DY +FR+N+   M  P
Sbjct:  122 VRVGSRVSFNTVVAAILIPSAKDLHAAARQELWWQETDYRDFRINFIQFMRTP 174          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JH78_9PHAE1.410e-4941.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G4_ECTSI1.680e-4653.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTF9_ECTSI2.610e-852.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK69_9PHAE3.440e-852.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2731866..2736224 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15706.1mRNA_C-linearis_contig8.15706.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2731806..2738785 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15706.1 ID=prot_C-linearis_contig8.15706.1|Name=mRNA_C-linearis_contig8.15706.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=503bp
MTADTSQVIVLQAKAAPVAIPFDRERGRGVVEENNACLVDKVAHQDQNPA
TAPQHQHQQQQQQQQQHNQSFDSHNRGKDDEQRRTVISGSTNTNASADVA
AVQRQDPQQQKQKQQQQQQQPPKWVRIGEKVCFSTVVAAVLIPSSHDLTP
STKRELWWQPADYAEFRVNYATHMHNPSFELEEEEREASGADPAPAVPVA
ANADAPAATATVEGVLVVAASPAPAPLTSRPPNPDEGVSGGRSHAASAGA
SGGSHKVGSGAGGGAAAPSQDRLPKSKPSTRYEKSARARPVAQLQQYNNA
PVRHRVGGGAGYKASPQRPHHSAYMAQHQFHGMQQQQQQAVMMMQGQHAA
GFGRRDARHDPYLAPRGGGNMNNGRYQPQHHHHAGHAVGNTIGRHGPQQQ
QQQFFVNGNPAGAAYRSSNGPFVEAFLPRHGAGGVTGGVAMAAAVPAQAF
SSRVGGGVAGVVSRSAVGVGVGHMPVPFQACNSSQFSMWRSQVVFAPIMQ
MQ*
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